SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2429

Length: 2745 nt

UniGene Fasta

>sp_v3.0_unigene2429
CCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTCCCGCGTACTCTGCGGGGAGATATACAAGGCTGTTACGCTTCATCGCTTGGCTGAATAAAACATTAGAAGTACGCCTTCGCAAAGTTTTGTGTGAAAGATTGATATCGGCGGAGTTTCTGTTATATCTTATAAGAGATTTCTCCATTTGCTCTAGGTTTTCAGGCATCTGAAAGTCTTGAATATTTGTTTGGTTCCCTGTTATATTCTATTTTGGTTTGTTGCAATTTCAATTTCAATGGCAGACGTGAACATGGGGAGCGGCGAGGTGGAGACTTTTGCTTTCCAGGCTGAAATTAATCAGTTGCTCAGCCTCATCATCAACACTTTCTACAGCAATAAGGAGATTTTCCTCCGTGAGCTCATCAGCAATTCGTCCGATGCGTTGGACAAAATTCGGTTCGAAGGACTGACGGATAAGAGCAAGCTCGATGCTCAGCCGGAGCTCTTCATTCGGCTTGTGCCCGACAAGGCTAACAAGTGCCTCACCATTATTGACAGCGGAATAGGCATGACCAAAGCCGATTTGGTGAACAATTTGGGAACCATTGCGAGATCGGGGACCAAGGAGTTCATGGAGGCTTTACAAGCCGGGGCGGATGTGAGCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCAGCCTACCTTGTGGCTGAGAAAGTGATTGTTACCACTAAGCACAACGACGATGATCAATACATTTGGGAATCCCAGGCCGGGGGGTCGTTTACTGTTACTAGAGACGTTAACGGAGAGCCCCTAGGCAGGGGAACTAAAATTACTCTGTTTCTCAAGGAAGACCAGCTGGAGTACCTGGAGGAGCGGCGGCTGAAGGATCTGGTCAAGAAGCATTCCGAGTTCATCAGCTATCCCATCTATTTGTGGACCGAGAAGACAACAGAAAAGGAAGTGAGCGACGACGAAGAGGAGGCAGAGGAGGAGAAGAAGGAAGATGAAGGGGATATCGAGGAAGTGGAGGAGGACAAGGATAAAGGGAAGAAGAAGAAGAAGGTGAAGGAAGTGTCACATGAATGGAGTCTGGTAAACAAGCAAAAGCCCATTTGGATGAGGAAGCCAGAGGAGATTACTAAGGAAGAATATGCGTCTTTTTACAAGAGTCTCACCAATGATTGGGAGGACCACTTGGCTGTGAAGCATTTCTCTGTGGAGGGTCAGTTGGAGTTCAAGGCTATTCTCTTTGTTCCCAAGAGGGCACCGTTCGATCTGTTTGACACAAGGAAGAAGCTCAACAACATTAAGCTGTATGTAAGAAGGGTTTTCATAATGGACAACTGTGAAGAACTTATTCCCGAATACCTGGGTTTTGTGAAAGGTGTGGTGGACTCTGATGATCTGCCCCTCAATATCTCCAGGGAAATGCTGCAGCAGAACAAGATTCTGAAGGTAATTAGGAAGAATTTGGTAAAGAAGTGTATTGAAATGTTTAACGAGATCGCCGAGAACAAAGAGGACTATGCCAAGTTCTATGAGTCATTTTCGAAGAACTTGAAATTGGGAATACACGAAGACAGCCAGAACAGGGCTAAGCTCGCGGATTTGCTGAGATATCACTCGACGAAGAGTGGAGACGAGATGACGAGCCTCAAGGACTATGTGACCAGGATGAAAGAGGGGCAGAAGGACATTTATTATATCACCGGCGAGAGCAAGAAGGCGGTGGAGAATTCTCCCTTCCTGGAGAGGCTGAAGCGGAAGGGTTATGAGGTCCTGTTCATGGTGGATGCCATCGATGAGTACGCCGTAGGTCAGCTCAAGGAGTATGACGGGAAGAAGCTTGTTTCTGCTACGAAAGAAGGGCTGAAGCTGGAGGAGACAGAGGAGGAGAAGAAAAAGAGGGAAGAGAAGAAAGCCGCATTTGACAGCCTCTGCAAAGTGATGAAGGACATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTTTCGGATCGTATTGTGGACTCTCCTTGCTGTCTGGTGACTGGCGAGTACGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCCTCCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACGATGGAGATTAACCCTGAGAACGCCATCATGGAGGAGCTGAGGAAGAGAGCCGAGGCTGACAAGCACGACAAATCTGTGAAGGATCTGGTGATGCTCTTGTATGAAACTGCTCTGCTTACCTCCGGGTTCAGCCTGGAGGAGCCAAACACATTCGCTGCCAGAATTCACAGGATGCTGAAGCTCGGCCTCAGCATCGAGGACGATGCCACCGGTGAGCTGGACGCAGACATGCCCCCACTGGAAGAGGACGCCTCCGTCGAGGAGGAGAGCAAGATGGAGGAGGTGGACTAAGTCTCCATTGACTCGTAGAACCAAGAAATCAAGTTTTCCGAGAGGGCTTTCAAATTGTTGGTCTTGTTCAATGCGTGTCACTGTGTATACGAAATTTTGTTGTGTTGTATATAGGAAGTCCGTTTCACGAATTGAGAATTTGTTGTTTTCTCCCACATAATCCAGATTTACTGTTAAGTTGGCTAACGTCTTGGATTAGAATTTCTTCCATTGACAACTATGGTAGTATCATGCAGCCATATGACATGGTTACATATACATTTTTGAGAAATAAGGTGAGTAGAGATAAAGATTTTAACTAGGTTATTTATAGTTAGTTTAGAATTTCCTCCATTGAAAACTATG

Ace file of the UniGene sp_v3.0_unigene2429

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	82%
FL-Next	sp=Heat shock protein 90-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	88%
Sma3	Heat shock protein, putative	-	-	-

Source	Gene names
Sma3	RCOM_1582180;

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	Heat shock protein Hsp90	IPR001404	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52640.1	HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 heat shock protein 90.1 chr5:21352542-21355147 FORWARD LENGTH=705	88%
RefSeq	Arabidopsis thaliana	NP_200076.1	heat shock protein 81-1 [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002327494.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P27323

Fln msg:

Fln protein: MADVNMGSGEVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRLVPDKANKCLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDDQYIWESQAGGSFTVTRDVNGEPLGRGTKITLFLKEDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEVSDDEEEAEEEKKEDEGDIEEVEEDKDKGKKKKKVKEVSHEWSLVNKQKPIWMRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYESFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEETEEEKKKREEKKAAFDSLCKVMKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENAIMEELRKRAEADKHDKSVKDLVMLLYETALLTSGFSLEEPNTFAARIHRMLKLGLSIEDDATGELDADMPPLEEDASVEEESKMEEVD*

Protein Length: 710

Fln nts: CCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTCCCGCGTACTCTGCGGGGAGATATACAAGGCTGTTACGCTTCATCGCTTGGCTGAATAAAACATTAGAAGTACGCCTTCGCAAAGTTTTGTGTGAAAGATTGATATCGGCGGAGTTTCTGTTATATCTTATAAGAGATTTCTCCATTTGCTCTAGGTTTTCAGGCATCTGAAAGTCTTGAATATTTGTTTGGTTCCCTGTTATATTCTATTTTGGTTTGTTGCAATTTCAATTTCA_-_ATGGCAGACGTGAACATGGGGAGCGGCGAGGTGGAGACTTTTGCTTTCCAGGCTGAAATTAATCAGTTGCTCAGCCTCATCATCAACACTTTCTACAGCAATAAGGAGATTTTCCTCCGTGAGCTCATCAGCAATTCGTCCGATGCGTTGGACAAAATTCGGTTCGAAGGACTGACGGATAAGAGCAAGCTCGATGCTCAGCCGGAGCTCTTCATTCGGCTTGTGCCCGACAAGGCTAACAAGTGCCTCACCATTATTGACAGCGGAATAGGCATGACCAAAGCCGATTTGGTGAACAATTTGGGAACCATTGCGAGATCGGGGACCAAGGAGTTCATGGAGGCTTTACAAGCCGGGGCGGATGTGAGCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCAGCCTACCTTGTGGCTGAGAAAGTGATTGTTACCACTAAGCACAACGACGATGATCAATACATTTGGGAATCCCAGGCCGGGGGGTCGTTTACTGTTACTAGAGACGTTAACGGAGAGCCCCTAGGCAGGGGAACTAAAATTACTCTGTTTCTCAAGGAAGACCAGCTGGAGTACCTGGAGGAGCGGCGGCTGAAGGATCTGGTCAAGAAGCATTCCGAGTTCATCAGCTATCCCATCTATTTGTGGACCGAGAAGACAACAGAAAAGGAAGTGAGCGACGACGAAGAGGAGGCAGAGGAGGAGAAGAAGGAAGATGAAGGGGATATCGAGGAAGTGGAGGAGGACAAGGATAAAGGGAAGAAGAAGAAGAAGGTGAAGGAAGTGTCACATGAATGGAGTCTGGTAAACAAGCAAAAGCCCATTTGGATGAGGAAGCCAGAGGAGATTACTAAGGAAGAATATGCGTCTTTTTACAAGAGTCTCACCAATGATTGGGAGGACCACTTGGCTGTGAAGCATTTCTCTGTGGAGGGTCAGTTGGAGTTCAAGGCTATTCTCTTTGTTCCCAAGAGGGCACCGTTCGATCTGTTTGACACAAGGAAGAAGCTCAACAACATTAAGCTGTATGTAAGAAGGGTTTTCATAATGGACAACTGTGAAGAACTTATTCCCGAATACCTGGGTTTTGTGAAAGGTGTGGTGGACTCTGATGATCTGCCCCTCAATATCTCCAGGGAAATGCTGCAGCAGAACAAGATTCTGAAGGTAATTAGGAAGAATTTGGTAAAGAAGTGTATTGAAATGTTTAACGAGATCGCCGAGAACAAAGAGGACTATGCCAAGTTCTATGAGTCATTTTCGAAGAACTTGAAATTGGGAATACACGAAGACAGCCAGAACAGGGCTAAGCTCGCGGATTTGCTGAGATATCACTCGACGAAGAGTGGAGACGAGATGACGAGCCTCAAGGACTATGTGACCAGGATGAAAGAGGGGCAGAAGGACATTTATTATATCACCGGCGAGAGCAAGAAGGCGGTGGAGAATTCTCCCTTCCTGGAGAGGCTGAAGCGGAAGGGTTATGAGGTCCTGTTCATGGTGGATGCCATCGATGAGTACGCCGTAGGTCAGCTCAAGGAGTATGACGGGAAGAAGCTTGTTTCTGCTACGAAAGAAGGGCTGAAGCTGGAGGAGACAGAGGAGGAGAAGAAAAAGAGGGAAGAGAAGAAAGCCGCATTTGACAGCCTCTGCAAAGTGATGAAGGACATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTTTCGGATCGTATTGTGGACTCTCCTTGCTGTCTGGTGACTGGCGAGTACGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCCTCCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACGATGGAGATTAACCCTGAGAACGCCATCATGGAGGAGCTGAGGAAGAGAGCCGAGGCTGACAAGCACGACAAATCTGTGAAGGATCTGGTGATGCTCTTGTATGAAACTGCTCTGCTTACCTCCGGGTTCAGCCTGGAGGAGCCAAACACATTCGCTGCCAGAATTCACAGGATGCTGAAGCTCGGCCTCAGCATCGAGGACGATGCCACCGGTGAGCTGGACGCAGACATGCCCCCACTGGAAGAGGACGCCTCCGTCGAGGAGGAGAGCAAGATGGAGGAGGTGGACTAA___GTCTCCATTGACTCGTAGAACCAAGAAATCAAGTTTTCCGAGAGGGCTTTCAAATTGTTGGTCTTGTTCAATGCGTGTCACTGTGTATACGAAATTTTGTTGTGTTGTATATAGGAAGTCCGTTTCACGAATTGAGAATTTGTTGTTTTCTCCCACATAATCCAGATTTACTGTTAAGTTGGCTAACGTCTTGGATTAGAATTTCTTCCATTGACAACTATGGTAGTATCATGCAGCCATATGACATGGTTACATATACATTTTTGAGAAATAAGGTGAGTAGAGATAAAGATTTTAACTAGGTTATTTATAGTTAGTTTAGAATTTCCTCCATTGAAAACTATG

Fln Alignment:

Contig2429___EVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRLVPDKANKCLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDDQYIWESQAGGSFTVTRDVNGEPLGRGTKITLFLKEDQLEYLEERRLKDLVKKHSEFISYPIYLWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHEWSLVNKQKPIWMRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYESFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSA-XXXXXXXXXXXXXXXXXXXXXAAFDSLCKVMKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXXKKTMEINPENAIMEELRKRAEADKHDKSVKDLVMLLYETALLTSGFSLEEPNTFAARIHRMLKLGLSIEDDATGELDADMPPLEEDASVEEESKMEEVD
P27323______________DAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRLVPDKSNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDVDGEPLGRGTKITLFLKDDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDEDEPKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEWELINKQKPIWLRKPEEITKEEYAAFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYTKFYEAFSKNLKLGIHEDSQNRGKIADLLRYHSTKSGDEMTSFKDYVTRMKEGQKDIFYITGESKKAVENSPFLERLKKRGYEVLYMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDETEEEKKKREEKKKSFENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLYETALLTSGFSLDEPNTFAARIHRMLKLGLSIDEDENVEEDGDMPELEEDAA--EESKMEEVD

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
53			66	33	0.997452
54			66	33	0.997452
57			66	33	0.997452
59		33		66	0.997452
61	33			66	0.997452
62	66		33		0.997452
65	66		33		0.997452
66			66	33	0.997452
68		66	33		0.997452
70	33		66		0.997452
72		33		66	0.997452
74	33	66			0.997452
75		33	66		0.997452
76		66	33		0.997452
77		33		66	0.997452
78	33			66	0.997452
79		66	33		0.997452
81			33	66	0.997452
82		66		33	0.997452
83	33		66		0.997452
85			33	66	0.997452
86		33		66	0.997452
89		66	33		0.997452
90			33	66	0.997452
123		33		66	0.997452
335	85		14		0.993533
711		10		90	1.0
820	11	88			0.923564
821		11		88	0.923564
822	11		88		0.923564
837		88		11	0.923564
841	11	77		11	0.968132
842	11			88	0.923564
843	11		88		0.923564
844			88	11	0.923564
850		87		12	0.992554
859	12	87			0.992554
860		12	87		0.992554
877	12		87		0.992554
925	14		85		0.993533
1394		87	12		0.992554
1844	87		12		0.992554
2261			5	94	0.998397
2457			71	28	1.0
2561	55			44	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1032	1047	GAA GAA GAA GAA GAA G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain