SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2413

Length: 1218 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2413

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref\|NP_001119465.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97324.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97328.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana]	-	-	1.0e-06	39%
FL-Next	sp=E3 SUMO-protein ligase SIZ1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	41%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6L4L4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 389 aas, your sequence is shorter than subject: 405 - 875

Fln protein: IPVSGL*NGKRKRRGRKQRMDREITLDPRFRPLKWKTKRQEAAVDKRSKIK*DTSKMCSVNTEKKQKLFHPVTGKAALDDGLASSFTPTSQGRLQAPGQNDNLLSKHDGLVSTGETVLLPEMVVQISDESTENTASKRLETGFGASEWQFTKQSMAPSVSDQAGCHGYLNSFLFFFPSGFVKD**RR*DTENRESGATAGSKDKVYF*RSIRRTLELLCKET*VIMDKLCVLFIYTNKMVVYCSIMS*NLLAIYSRLCGKLQCTYILVRNQSRSLGGWEARNMKHLLLHCQQIH*FARLLI*ILVPKECRNWNM*ILFPNQNNNVLLQWQCPMCKENYSVDSIINFMKNYSKDVTEVEVKPDASWYPTVEGYASLREHWHQPDRSMTISIGKITHQQGNLNQVKC

Protein Length: 406

Fln nts: CGATCCCCGTTTCAGGCCTTTGAAATGGAAAACGAAAACGAAGAGGCAGGAAGCAGCGGATGGATAGGGAGATAACTCTCGATCCCCGTTTCAGGCCCTTGAAATGGAAAACGAAGAGGCAGGAAGCAGCGGTTGATAAGAGAAGTAAGATAAAATAAGATACAAGTAAAATGTGTTCAGTAAATACAGAAAAGAAACAAAAATTGTTCCACCCTGTAACTGGAAAGGCCGCCCTAGATGACGGTTTGGCCAGTTCATTTACACCAACTAGCCAGGGCAGGCTTCAAGCTCCAGGACAAAATGATAATCTTCTTTCAAAACATGACGGATTAGTGTCAACTGGTGAAACAGTGCTGCTTCCAGAGATGGTTGTCCAAATTTCAGATGAAAGCACAGAAAATACTGCTTCCAAGCGTTTAGAGACGGGTTTTGGAGCCAGCGAATGGCAGTTTACCAAACAGAGTATGGCGCCATCGGTAAGCGATCAGGCCGGATGCCATGGCTATTTGAATTCTTTTCTTTTCTTTTTCCCGAGTGGTTTCGTAAAGGATTGATAACGGAGATAAGATACCGAGAATCGAGAATCTGGAGCGACAGCAGGGTCAAAGGATAAGGTGTATTTTTAGCGTTCAATACGGCGTACGCTTGAGCTGCTCTGTAAAGAAACTTAGGTCATAATGGATAAATTATGTGTCCTTTTTATTTACACCAATAAAATGGTTGTTTACTGTAGTATTATGTCCTAAAATCTACTGGCTATCTATTCCCGTCTCTGCGGGAAGTTACAGTGTACCTATATTCTGGTGAGAAACCAAAGCAGAAGTTTAGGTGGCTGGGAAGCCAGAAATATGAAGCATCTGCTGCTCCACTGTCAACAAATTCATTGATTTGCAAGACTCCTGATTTAAATTCTAGTCCCCAAAGAGTGCCGGAATTGGAATATGTGAATTCTCTTTCCAAATCAAAACAACAACGTCCTGCTTCAGTGGCAGTGTCCTATGTGCAAGGAGAATTATTCAGTGGATAGCATCATTAATTTTATGAAAAACTACTCTAAGGACGTAACTGAAGTTGAGGTGAAACCAGATGCTTCTTGGTATCCAACGGTTGAAGGTTATGCCAGTCTCCGTGAGCATTGGCATCAGCCAGATAGATCAATGACTATCTCAATTGGAAAAATTACACATCAGCAGGGAAACTTGAACCAAGTTAAATGTG

Fln Alignment:

Contig2413___QWQCPMCKENYSVDSII---------NFMKNYSKDVTEVEVKPDASWYPTVEGYASLRE--HWHQPDRSM
Q6L4L4______________KWQCPICLKNYSLESLMIDPYFNRITSLLRNCNEDVNEVDVKPDGSW--RVKGDAASRELSQWHMPDGTL

SSRs (tot: 1)

Start position	End position	Sequence	Length
512	528	TTCTT TTCTT TTCTT TT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain