SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2412

Length: 1730 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2412

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60860.1	AtRABA1f, RABA1f RAB GTPase homolog A1F chr5:24484750-24485565 FORWARD LENGTH=217	83%
RefSeq	Arabidopsis thaliana	NP_200894.1	RAB GTPase homolog A1F [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002300408.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV29

Fln msg:

Fln protein: MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPAQGQTINVKDDVTATKKVGCCSTS*

Protein Length: 218

Fln nts: CGGATACTGCTGACTCTGCCGTCAATTTCCCTTTTATGAGTATACTACTTCATTGCTTCGCAAGATTCAGCCAAGTGGATCTGGCTACAGATTTTCTCATCTCCAAGGCTGCCAGAACTCAAATCTGATCGCACACGACTCTCTCCTTTGGTCATTTTTGGGGGCTTTTGGGTGTTTATTGCGGACACCCAATGCCCAAAGATCTGGATCCAATACCCATTTCCTAGATCAGCGTAAACAACGCGTCGGTTTAATATTCAGCGTGTATCCGTCCATTCAACGGGAGATTGGGTTTCTGCGATACATTCATTTTGTATCCATCCAACAGTTATTGGGCGTCTGCAGTAGGTCGATATTCATTATCTATCCCTTGAACCAGCTATTGGGTTCACGCAATAAGCCGATATTCATCGTGTATCCATTGAAAGGCTATTATTTTTCTCCAATAGCTTGATATCCATTGTGTATCCATCCGGCCAGATATTGGGTGTCTATTCATTATCTACCCATTGAACCGGCTATTGGGTTTCTGCTATAAGGTGAAATTAACTGCGCCGCTATTCATTCAGGTTTTGGGTTCTTGAGCACGCCCAAGAGTTCGTTTGGTGCTGTGTGGAG_-_ATGGCTTACAAAGTCGATGATGATTATGACTATTTGTTTAAGGTGGTCCTGATTGGGGATTCTGGTGTCGGTAAGTCCAATTTGCTCTCCAGATTTACTAGAAATGAATTCAGCCTGGAGTCCAAATCTACAATTGGTGTGGAGTTTGCAACACGGAGCATTAATGTTGATGGGAAAATGATCAAGGCCCAGATATGGGACACTGCTGGTCAGGAAAGGTACAGAGCCATCACAAGTGCATATTATCGCGGTGCTGTTGGTGCATTGTTGGTTTACGACATCACTCGACATGTCACCTTTGAAAATGTTGAGAGGTGGCTCAAGGAGCTTCGTGATCATACCGAGCACAACATTGTGGTGATGCTTGTTGGTAACAAGTCCGACTTGCGCCATTTGAGGGCTGTTTCCACGGAGGATGCCCAGACCTTTGCAGAAAGAGAAGGGCTCTATTTCATAGAGACATCTGCACTAGAGTCCACCAATGTGGAAAATGCTTTCAAGCAGGTGCTGACTCAAATATACAGGATCGTTAGTAAGAAGGCTCTGGATGTTTCGGAAGATAATGCAGCAGCTCCCGCACAAGGTCAAACAATCAACGTGAAAGATGATGTCACGGCAACTAAGAAAGTTGGTTGCTGTAGCACATCATAA___GCAGCAGGTGAAATCCCTCAGGATTCGGATTTCAGTTCAGATGCAGGAGTATTATGTTCATTGGAAAAACTTTGACCGATTTCTGGAATCACTTATAGTTGAATTCGAGCAGGTTCTCATTTGGTTTGATTTTAAGAGGCTTCAAAGTTGGACTCACTTAGTAACTAGTTTTAGACGGAGAGAAGAGTGTTGTAGCCAATGGTGGGTAATCTGAATTGTATATCTTATTCTTGCTGTATTCTCTGAAACTTCTAGTGTCCCAGTTCTGAAACTTCTAGTGTCCCAGTACTATCTTTGTTCTAGTCAGTGGCTTCAGTTTTACATGCCATCATTTGTATCCATTATTTCATTTTATTCTCACAATGGAAGACAGATTTTTTTGATCTTAGTTAAAATATTACATGGAAATATCCTTTGGTTTGATCTTTTACTACTCTGAGCAGTGTTCATTGTCTGCATGT

Fln Alignment:

Contig2412___MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPAQGQTINVKDDVTATKKVGCCSTS
A9NV29______________MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPPQGQTINVKDDVTATKKVGCCSTS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
557		85		14	0.993533
560	14	85			0.993533
616	20			80	0.995493
617		20	80		0.995493
618	20		80		0.995493
619	80			20	0.995493
620			80	20	0.995493
674	25			75	0.996473
675		25	75		0.996473
676	25		75		0.996473
677			75	25	0.996473
678			75	25	0.996473
680			33	66	0.997452
809		33	66		0.997452
1093	75		25		0.996473
1425	4			95	0.996599
1428		59	36		1.0
1536	2			73	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain