SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2395

Length: 947 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2395

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein embryo defective 2752 [Arabidopsis thaliana] sp\|Q94K18.1\|Y4966_ARATH RecName: Full=Uncharacterized protein At4g29660; AltName: Full=Protein EMBRYO DEFECTIVE 2752 gb\|AAK43850.1\|AF370473_1 putative protein [Arabidopsis thaliana] gb\|AAL47374.1\| putat	-	-	1.0e-27	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	At4g29660; EMB2752; GSVIVT00016577001; OJ1362_G11.2; OSJNBa0052K01.24; Os05g0540200; OsI_20808; OsJ_19382; PHYPADRAFT_144997; POPTRDRAFT_661486; RCOM_1047700; T16L4.170;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29660.1	EMB2752 embryo defective 2752 chr4:14534495-14535171 REVERSE LENGTH=103	1.0e-35	59%
RefSeq	Arabidopsis thaliana	NP_567830.1	protein embryo defective 2752 [Arabidopsis thaliana]	1.0e-35	59%
RefSeq	Populus trichocarpa	XP_002317757.1	predicted protein [Populus trichocarpa]	8.00001e-42	67%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
193	50	25	25		1.0
197	40			60	1.0
198		16	83		0.994512
199	16	50			1.0
200	28	42			1.0
498			70	30	1.0
622		44		55	1.0
804			78	21	1.0
836	11	88			1.0
839	91			8	1.0
840		91		8	1.0
842	90			9	1.0
843			90	9	1.0
845	86		10	3	1.0
846	89			10	1.0
849			3	69	1.0
851	84	3		3	0.99801
852		8		91	0.999766
862	9	27		63	1.0
884	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain