SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2391

Length: 2584 nt

UniGene Fasta

>sp_v3.0_unigene2391
CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACCTTCTCACATCCATTTCATTGATCAGTCCTGGGACTTGGTTGAGAAATGCGGCAGCGAAATCAGAGCAGAGGTGGGGTGAGACCATCGGGGACTGATGGCTTTGACTACTCCTATCGCATGACCGTCGATCAAAGGTACCAGAAGGTAGCTCAAAGAAGGGGCCAGCTTTACAGAGCGTTACTATGCCAGGGCGCTTGTCAAGTGTTGGGCATACTGTGGGTAGCCTTGGAAATATTGAAAGGAAGAGAGGTCAACAGAATTGCAATGCTTTCAAGTGCCATTGGAATTATTGCACTATCTGCTGGAGAAACTGGTCGAAGATGGAGTAATCCTAAACTTCTGAACCTTTACATGCTTGCATCATCTATTGCAACGACACTATCACTTATACATTGCGATTTGGGTCACTTCTCAGCTCAGTTCTTTAGCAATTCAAAGCAGGACCAAGATACCGATACTCTACTGGTTTTGTTTGGCGTGTTGGAGGGATGCAGAGTCTTAGCAGGGGTGCTGGTGCAACTTATTGCAGTGCCTGTGACCATTTCTTTATTGAAAAACATGTCCACAAAAAGGACTTCTTGAAAGAGTAGTATGACTTCTTTTGACTGGATTTTTATTGGCGCTCATTTCCGTCTCTGGGGTGCTGGTACAAATTTTTGCAATCCTTGCAACCATGTCTTTATTGAAAGACATGTCCTCAAAGAGGACTTCTTGAAAGTATCATTTCTGATGACTTCTTTTGACTGGTACTTTTATGGACACTACATTTTCATCTCAAATGTGACACAAATTATTGCAAAAACTTGCAATGTATTTTGTGCTGCCACATTCTGAGAGAGGGATTCTTGAAATTTTACTGTTGCTAGTCTGAAATTGTTTTTGTGCTTTTGAGAATAGAAGTTGGTGATGTTTCCTGATAAGGTAATTTTGAGGATTCTTCTTTTATTGAACGTTGCACCCAAGGTGGTATTCTTCAATTAAAAAAACTTTTGTTTGTCTTTCATCCCTGCAAATGGATGAAGACAGACTCAAACAAAATTTAACTCACTTTGCGCACAATAAAAGACTATTATCACAATTGGGACCAACATGTCACAGACCTACAGCATTTCACTATACTCCGTACTCACTATACAGAATAGACTGTGCACTTACGATACTGAGTGTCAACAAGTAACTTAGCACAAAAGCTTGCCAATCTGTACCATTCATAAGCTATATTTGACAACCAATTACTGTAGCGAGGAAGATTAAATATTGCTTTAGAAAAACGAAAACTTGAATCTGTTGGTCAGAGCTATCCAGTAAATAAAGTGTGAGTTTTTGTTAATAGGCCTGCAACTAATCTTTCTTGATCGGTAATTTAAATGGTCAGTTGCAGATACAATGCTTCCCTTGTGATAGAACCACATCATAAGTACTGCCGTGTACACAATTTGTACAATGCCACCTCCACACGTTTTCCCATGGATATATGGTATGCTGAATTCACAGCGCATCAAGTTGACACAAAACCAGGGCACCCACACACTGAATGCTCATGGCAAGCACTTTAAATCTTCATCCACCTCCTGTCGAAAGAGAAGTCAAGAATGCAGTCCTTCGATATTTCCTCCGTACCTCCAAAGTGATTAAAGAATATAAAAAGCAGAAATCAATCATCCCAGGCATTATCTGCAGCACNNNNNNNGCACCTTCTTGCTTGAGATTTGCCTGTGCCAACATGTACTTATATTTGTCTTCAACACGAATGGTGGTGGATCCAAGGACACCTGTTCCAGTAGGAGCTAGTCTTCCTTCCCGAAATGCTGCTGCCTGTTCCCTCTCCTTTCTCCTTGCAGCCTTTCCAGTTGCAAATGCCATGGTGTTTCCAGCTTCTGCATCTGCTATTGCCTTCCGAATATGAGCAACCAGGAACATATCCCGCTCTGTGTAAAAGGAAGTTGCTCGGCCACTGGTCCCTGCACGGCCCGTTCTTCCAATACGATGCACATAATCCTCCATAGCCTTGGGGAGATCAAGGTTAACAACATGGGAAACACCAGTCACATCCAAACCTCGAGAGGCCACGTCTGTAGCGACCAGAATATTAGTGGAGCCACTACGAAACTCACGTAAAGCAGCTTCTCTTTCCACTTGACTTCGACCACCATGTAGTGCAACTGCATGGAGACCTTGCGCAACTAATGCATCTGAAACTTCGTCACACCTTGTCTTTCGTTCAACAAAAACAATGGTCAGAGGAAGAGGTTGTCCAGACTTCTCTGCTTGGGATGATTCCTCCACAAGTAAAGCTAAGAGACGATCAGTCTTTTCGTCTTCAGTAACCTTCTCTAGGACCTGAGAAACATTTGCCGTTGGACTGCTTACTTTTCCCACCTTTACTTGCACTGGCTTATTCAGATATTCCTGAGCAAGTGCTTCAATCTCCTCTGGCATTGTGGCACTGAATAATAATGTCTGGTGCCTTTTAGGAAGATTTCGCATGACCTCTCTTATCTGGGGTTCAAAACCCATATCTAGCATTCTATCGGCCTCGTC

Ace file of the UniGene sp_v3.0_unigene2391

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD box protein P68 [Pisum sativum]	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	7.893e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	2.02701e-40	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.02701e-40	%
Sma3	Lipopolysaccharide biosynthesis	00540	2.02701e-40	%
Sma3	Folate biosynthesis	00790	2.02701e-40	%
Sma3	Metabolic pathways	01100	2.02701e-40	%

Source	Gene names
Sma3	At2g42520; At2g47330; At3g01540; At3g06480; At3g58510; At3g58570; At4g33370; At5g14610; At5g51280; At5g63120; B1156H12.12-1; B1156H12.12-2; CHLREDRAFT_103049; CHLREDRAFT_104111; CHLREDRAFT_111269; CHLREDRAFT_131102; CHLREDRAFT_136376; CHLREDRAFT_178281; D

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	DbpA, RNA-binding	IPR005580	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G58570.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:21657099-21660352 FORWARD LENGTH=646	7.00649e-45	47%
RefSeq	Arabidopsis thaliana	NP_191416.1	DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]	8.40779e-45	47%
RefSeq	Populus trichocarpa	XP_002319430.1	predicted protein [Populus trichocarpa]	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE47

Fln msg:

Fln protein: MRQRNQSRGGVRPSGTDGFDYSYRMTVDQRYQKVAQRRGQLYRALLCQGACQVLGILWVALEILKGREVNRIAMLSSAIGIIALSAGETGRRWSNPKLLNLYMLASSIATTLSLIHCDLGHFSAQFFSNSKQDQDTDTLLVLFGVLEGCRVLAGVLVQLIAVPVTISLLKNMSTKRTS*

Protein Length: 180

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACCTTCTCACATCCATTTCATTGATCAGTCCTGGGACTTGGTTGAGAA_-_ATGCGGCAGCGAAATCAGAGCAGAGGTGGGGTGAGACCATCGGGGACTGATGGCTTTGACTACTCCTATCGCATGACCGTCGATCAAAGGTACCAGAAGGTAGCTCAAAGAAGGGGCCAGCTTTACAGAGCGTTACTATGCCAGGGCGCTTGTCAAGTGTTGGGCATACTGTGGGTAGCCTTGGAAATATTGAAAGGAAGAGAGGTCAACAGAATTGCAATGCTTTCAAGTGCCATTGGAATTATTGCACTATCTGCTGGAGAAACTGGTCGAAGATGGAGTAATCCTAAACTTCTGAACCTTTACATGCTTGCATCATCTATTGCAACGACACTATCACTTATACATTGCGATTTGGGTCACTTCTCAGCTCAGTTCTTTAGCAATTCAAAGCAGGACCAAGATACCGATACTCTACTGGTTTTGTTTGGCGTGTTGGAGGGATGCAGAGTCTTAGCAGGGGTGCTGGTGCAACTTATTGCAGTGCCTGTGACCATTTCTTTATTGAAAAACATGTCCACAAAAAGGACTTCTTGA___AAGAGTAGTATGACTTCTTTTGACTGGATTTTTATTGGCGCTCATTTCCGTCTCTGGGGTGCTGGTACAAATTTTTGCAATCCTTGCAACCATGTCTTTATTGAAAGACATGTCCTCAAAGAGGACTTCTTGAAAGTATCATTTCTGATGACTTCTTTTGACTGGTACTTTTATGGACACTACATTTTCATCTCAAATGTGACACAAATTATTGCAAAAACTTGCAATGTATTTTGTGCTGCCACATTCTGAGAGAGGGATTCTTGAAATTTTACTGTTGCTAGTCTGAAATTGTTTTTGTGCTTTTGAGAATAGAAGTTGGTGATGTTTCCTGATAAGGTAATTTTGAGGATTCTTCTTTTATTGAACGTTGCACCCAAGGTGGTATTCTTCAATTAAAAAAACTTTTGTTTGTCTTTCATCCCTGCAAATGGATGAAGACAGACTCAAACAAAATTTAACTCACTTTGCGCACAATAAAAGACTATTATCACAATTGGGACCAACATGTCACAGACCTACAGCATTTCACTATACTCCGTACTCACTATACAGAATAGACTGTGCACTTACGATACTGAGTGTCAACAAGTAACTTAGCACAAAAGCTTGCCAATCTGTACCATTCATAAGCTATATTTGACAACCAATTACTGTAGCGAGGAAGATTAAATATTGCTTTAGAAAAACGAAAACTTGAATCTGTTGGTCAGAGCTATCCAGTAAATAAAGTGTGAGTTTTTGTTAATAGGCCTGCAACTAATCTTTCTTGATCGGTAATTTAAATGGTCAGTTGCAGATACAATGCTTCCCTTGTGATAGAACCACATCATAAGTACTGCCGTGTACACAATTTGTACAATGCCACCTCCACACGTTTTCCCATGGATATATGGTATGCTGAATTCACAGCGCATCAAGTTGACACAAAACCAGGGCACCCACACACTGAATGCTCATGGCAAGCACTTTAAATCTTCATCCACCTCCTGTCGAAAGAGAAGTCAAGAATGCAGTCCTTCGATATTTCCTCCGTACCTCCAAAGTGATTAAAGAATATAAAAAGCAGAAATCAATCATCCCAGGCATTATCTGCAGCACactgactGCACCTTCTTGCTTGAGATTTGCCTGTGCCAACATGTACTTATATTTGTCTTCAACACGAATGGTGGTGGATCCAAGGACACCTGTTCCAGTAGGAGCTAGTCTTCCTTCCCGAAATGCTGCTGCCTGTTCCCTCTCCTTTCTCCTTGCAGCCTTTCCAGTTGCAAATGCCATGGTGTTTCCAGCTTCTGCATCTGCTATTGCCTTCCGAATATGAGCAACCAGGAACATATCCCGCTCTGTGTAAAAGGAAGTTGCTCGGCCACTGGTCCCTGCACGGCCCGTTCTTCCAATACGATGCACATAATCCTCCATAGCCTTGGGGAGATCAAGGTTAACAACATGGGAAACACCAGTCACATCCAAACCTCGAGAGGCCACGTCTGTAGCGACCAGAATATTAGTGGAGCCACTACGAAACTCACGTAAAGCAGCTTCTCTTTCCACTTGACTTCGACCACCATGTAGTGCAACTGCATGGAGACCTTGCGCAACTAATGCATCTGAAACTTCGTCACACCTTGTCTTTCGTTCAACAAAAACAATGGTCAGAGGAAGAGGTTGTCCAGACTTCTCTGCTTGGGATGATTCCTCCACAAGTAAAGCTAAGAGACGATCAGTCTTTTCGTCTTCAGTAACCTTCTCTAGGACCTGAGAAACATTTGCCGTTGGACTGCTTACTTTTCCCACCTTTACTTGCACTGGCTTATTCAGATATTCCTGAGCAAGTGCTTCAATCTCCTCTGGCATTGTGGCACTGAATAATAATGTCTGGTGCCTTTTAGGAAGATTTCGCATGACCTCTCTTATCTGGGGTTCAAAACCCATATCTAGCATTCTATCGGCCTCGTC

Fln Alignment:

Contig2391___MRQRNQSRGGVRPSGTDGFDYSYRMTVDQRYQKVAQRRGQLYRALLCQGACQVLGILWVALEILKGREVNRIAMLSSAIGIIALSAGETGRRWSNPKLLNLYMLASSIATTLSLIHCDLGHFSAQFFSNSKQDQDTDTLLVLFGVLEGCRVLAGVLVQLIAVPVTISLLKN
D5AE47______________MQQRNQSRGGTRPSGTDGFDYSYRMTVDQRYRKVAQRRAQLYRSFLCQAACQVWGILWVALVILKGREVDRIAMLSTAIGIFALFAGETGRRWSNPKLLNLYMLTSSIATTLSLKHCDLGHLSGQFISNSNQDQDTDSLLVLFDGFETCRVLAGVLVQIIAVPVTISLLKN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
464			18	81	1.0
466		84	15		0.999986
469			15	84	0.999986
470	84	15			0.999986
471	15		84		0.999986
474	84	15			0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain