SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2378

Length: 1284 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2378

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L8-1 n=28 Tax=Spermatophyta RepID=RL81_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18020.1	EMB2296 Ribosomal protein L2 family chr2:7837151-7838160 FORWARD LENGTH=258	87%
RefSeq	Arabidopsis thaliana	NP_179393.1	60S ribosomal protein L8-1 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002310303.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT38

Fln msg:

Fln protein: MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLLRVTFRHPFRYRHQKELYIAAEGMYTGQFIYCGKKANLTVGNVLPLKSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKTDKTS*

Protein Length: 263

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGATTCTCGCGTTAGGGTTTTTCTGTATCGGGGGAGGGAGGGTTGTAGAGGAAACTCTAGTAGTGTAGTGTAGCA_-_ATGGGAAGAGTGATCAGAGCACAGAGGAAGGGAGCGGGTTCGGTGTTCAGATCCCACACGCATCACAGGAAGGGACCTGCACGCTTTCGCAGCCTCGACTATGGGGAGCGCAATGGCTACATCAAGGGCATTGTCTCCGATGTTATTCATGACCCAGGGCGAGGTGCCCCGCTTTTGAGGGTGACTTTCAGGCATCCCTTCCGCTATAGGCACCAGAAGGAACTTTACATCGCAGCCGAGGGTATGTATACGGGCCAGTTCATTTATTGCGGTAAGAAGGCCAATCTCACCGTGGGCAACGTGCTGCCTCTCAAATCTATTCCTGAGGGAGCTATCGTCTGCAATGTGGAGCAACATGTCGGAGACCGTGGTTCGTTTGCCCGAGCTTCGGGAGACTACGCTATCGTCGTCAGTCACAACTTTGATAATGGCACTAGCAGGATCAAGCTACCTTCTGGAGCCAAGAAAATAGTGCCGAGCAGTTGCAGAGCAATGATTGGTCAAGTTGCTGGTGGTGGAAGGACTGAAAAGCCCATGCTCAAGGCTGGAAATGCATACCATAAGTACAGAGTCAAGAGAAATAGCTGGCCCAAGGTTCGTGGTGTGGCTATGAACCCAGTTGAACATCCTCATGGTGGTGGTAACCATCAGCATATTGGTCATGCCAGTACTGTGCGCCGTGATGCACCACCTGGGCAGAAAGTTGGTCTTATTGCTGCAAGAAGAACTGGTCGTTTACGTGGACAAGCTGCATCAGCTGCTGCAAAGACCGACAAAACCAGTTAG___TGTGTTCCTCGTCTGTTATTAGGTGGAAGAGGTGTTGTTTATGCCGTATGTGTATTTGGACATTTTGGTATGTTCACAAACAAGAGTAAGATTTATTGCCACTCAGATTTGTCCTTTGTGGGACTGAAATTCCGAGTATTTCTTTGTTTACTGAAGTTTTGTTCAAGAATTTTGTTTGGTGAACATTTTTAGATCACTGGTTTAAGCGTCAACATTTGTAGGATGATAGAACCTAGGCCGGCCCTTGCTATTACAATGAGGAAAGATACATTTCTTTGTCGCTCAGTGTTATATTCAGTTGGGTAATTACATCTATGTTTCCATTTTATATTTTGGCTTGTAAGAATTTTCTGGTTTGTTAAGTATAGTCCACGCATGTGCTTTTTGTGAG

Fln Alignment:

Contig2378___MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLLRVTFRHPFRYRHQKELYIAAEGMYTGQFIYCGKKANLTVGNVLPLKSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ
C0PT38______________MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLCKVTFRHPFRYRHQKELFVAAEGMYTGQFVYCGKKANLIVGNVLPLRSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ

SNPs (tot: 4)

Position	C %	G %	T %	Probability
1103	96		3	0.986325
1111		53	46	1.0
1222	11		88	0.923564
1253		16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain