SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2374

Length: 2607 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2374
AAATGAAAAATAATGATAAAATATTAGGTAAGAGAAGCGTGTTTTCGCAGCTTCCAGAGGGCACTACGTTGGGTTTGGTTTGATTGAAGTTTGAACGGATTAAAGAAGCTTGATTTTCATGAATTCCTCCCAATCCCAATCCCAATTGTGGTCGACCGTTCGAATCCCGCCCAGTTGCATCACTTCTGCTCTTTTGTTTTGACCGACGTCATCTTTTGCGGGATTTCTGCCACTGTGTTTTTGACCAGAGACTGTGGACTTGGGGATCCCCTATTTTGGCCTTTTCATTGATGATGGGTTTAAGACAGCTGGGCTCTGATTGATTGCCATGGGGGCGTGAATTTCCCCGTCAAAAGGCCATGTACAGTGGTCGTTTTCTTCTGAGCGCGCAATCTCCAGACAGGATGGATGGAGGGATTTGAACGTACTGTAGAAGAAGAGGAGTTCAAGTCGGGTTTTTCTGCGTAGGAGGCTCTCCATATCGAGGCTTTAGGAATCGTAAACAGGGATGGTTTTGTGGATTTTGTTATGGCGGAGAATGCGCCTGCTTTAATTACGGCTTTGAATTCCATTCAGGCACTTGGCCGGGGGTTCGATGTTACGTCTGATATCCGATTTCTTTACTGCAAGGGTGCTGCCGGGTCTCGGCTTGTAGTGATAGACGAGGAGAACACCAAGGATCTTGCTCTGCCTTGCGATTTGATTTTACCCAATGTGCCCGTCGAGGTCGCCTGCTACGCTGGAGAACGCAAAAGAAAACAGACGGGCGTTCTTGACTTCCCCCAGATGGCGGAGGAATTCAATAAAGTCGTTGGCCTGTCTGGGAGGATCCCTCGGGGGAGCTTTAATGCCGCGTTCAATTTCTCTGGTTCCTGGGAATCCGATGCTGTGTCCACCAAGAGTCTAGCAATGGATGGAATGTTTATAGCATTATATAGGGTTTGCTTGTCGAAATCCGCGTTGGTATTGTGCCCTGAAGTCAAGCGTGCGGTTCCAAATACATGGGAACCAGCCTCTTTAGCAAGCTTCATTGAAAATTTTGGAACCCATATTATTATATCTGTGACAATTGGTGGTGGAGATGTGATATACGTTAAACAGCACCACTCATCTCCACTATCTTCAACAGACATTGAGAATTATGTAAAAGAGATTGCTGGCCAAAGATTTTCAGATTCGGAAAGTAATAGCAGCTTTGGAGTAAGCACATTGAAAGACAAGGATGTTACAATCATATTCAGAAGGAGAGGAGGTGATGATCTTGTCCAAAGTCACAAAGTTTGGGTGGATACTATTGGCCGTAATCCTGATGTTATCAATATGTCATTTGTACCTGTAGTATCTCTGTTGGAAGGGCTTCCTGGAAAGGACCATCTCAGACGTGCTATTGATCTCTACCTAGAATACAAACCTCCAATCGAAGAGCTTCAGTATTTCTTGGAATTTCAAGTACCTAGTACATGGGCTCCCCTTTCCAGTGACTTGCCAGGACAAGAAAGGAAGGAACCAGTATGCCCAACACTGCAATTCAGTTTGATGGGTCCTAAGCTTCATGTTAGCACATCTCAGGTAACTGTTGGTCGAAAACCAGTGACAGGGCTTCGGTTATGCCTTGAGGGAAGGAAGCAAAACAGACTTGCAATTAATTTGCAACATTTAGTCTCTCTACCCAAAATCCTACAGCCACACTGGGATGCACATGTTGCAATTGGGCCTCCTAAGTGGCAAGGACCAGAAGAGCAAGATAGTAGATGGTTTGAACCTGTTCAATGGAAGAACTTTTCACATGTCAGCAGTGCTCCTGTAGAGAACAGTGAAACATGGATAGGGGACCTCTCTGGGGTTTATATTGTTACTGGAGCACAACTTGGTGTCTGGGATTTTGGGAATAAAAGTGTTTTGCATCTCAGGCTTTTATTTTCTAAGGTTCCAGGTTGTACCATACGGAGATCAGTATGGGATCATACACCTGTATCACATCAAAAGGTTGGCATGCATACATCAAACCAATCAGCATTGAAGATCTCAGGTAATCCCAGTTCCGGATCAACTGTCCAAATAGGAAAGCTGGCAAAGTTCGTTGATGTGACAGAGATGACCAAAGGGCCTCAAGATATGCCTGGCCATTGGTTGGTCACTGGTGCAAAGTTGGGGGTTGAGAAAGGAAGGATTGTATTGCGTGTAAAATATTCCCTCTTAAATTACTAAGATATGAGAGACGAATGTGATTGGATGATGATTGAAATATGCCAGTGCTTGGCTGCACAAGGTTGTATACGAATGTAGAGAACAGGAGCATCACCTTCTCATGTAGCAGAGTTTTAAACAGCATCTATTCGGAAAATTCTTTTCACAGGTCGGTGTGTAAAACACTTCATGGGGTTTCTCAATGCTAGTGTTCATTTGTTTCTGTCTATCAAGACTTCCCAACGGGATTTATAATTGGAGGCTTGCATTCTTGAATCCGGTTGTATATTGCTGTTAACAAACTGTCCTGATGGACTGTATTGTGATTTTTATGGCACTAATAGGAATATGAGAAAGTCGTGCCAACAATTTTTTTTCATAACTTTTCTTTATTGCTTATTTGCCTTTTTGTCGTCTAAG

Ace file of the UniGene sp_v3.0_unigene2374 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAC/Perforin domain-containing protein [Arabidopsis thaliana] gb\|AAG51760.1\|AC068667_39 unknown protein; 124288-121737 [Arabidopsis thaliana] gb\|AAL75908.1\| At1g29690/F15D2_24 [Arabidopsis thaliana] gb\|ABO38750.1\| At1g29690 [Arabidopsis thaliana] gb\|AEE31	-	-	0.0	66%
FL-Next	sp=MACPF domain-containing protein CAD1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Sma3	MAC/Perforin domain containing protein	-	-	7.738e-09	-

Source	Gene names
Sma3	AT4g24290; At1g28380; At1g29690; At4g24290; F15D2.24; GSVIVT00003061001; GSVIVT00019234001; GSVIVT00030609001; GSVIVT00033508001; GSVIVT00035282001; GSVIVT00035793001; GSVIVT00035794001; GSVIVT00037483001; MA4_82I11.22; MBP_81C12.22; MtrDRAFT_AC140550g15v

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G29690.1	CAD1 MAC/Perforin domain-containing protein chr1:10379310-10381861 REVERSE LENGTH=561	66%
RefSeq	Arabidopsis thaliana	NP_564333.1	MAC/Perforin domain-containing protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002305709.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C7N2

Fln msg:

Fln protein: MAENAPALITALNSIQALGRGFDVTSDIRFLYCKGAAGSRLVVIDEENTKDLALPCDLILPNVPVEVACYAGERKRKQTGVLDFPQMAEEFNKVVGLSGRIPRGSFNAAFNFSGSWESDAVSTKSLAMDGMFIALYRVCLSKSALVLCPEVKRAVPNTWEPASLASFIENFGTHIIISVTIGGGDVIYVKQHHSSPLSSTDIENYVKEIAGQRFSDSESNSSFGVSTLKDKDVTIIFRRRGGDDLVQSHKVWVDTIGRNPDVINMSFVPVVSLLEGLPGKDHLRRAIDLYLEYKPPIEELQYFLEFQVPSTWAPLSSDLPGQERKEPVCPTLQFSLMGPKLHVSTSQVTVGRKPVTGLRLCLEGRKQNRLAINLQHLVSLPKILQPHWDAHVAIGPPKWQGPEEQDSRWFEPVQWKNFSHVSSAPVENSETWIGDLSGVYIVTGAQLGVWDFGNKSVLHLRLLFSKVPGCTIRRSVWDHTPVSHQKVGMHTSNQSALKISGNPSSGSTVQIGKLAKFVDVTEMTKGPQDMPGHWLVTGAKLGVEKGRIVLRVKYSLLNY*

Protein Length: 561

Fln nts: AAATGAAAAATAATGATAAAATATTAGGTAAGAGAAGCGTGTTTTCGCAGCTTCCAGAGGGCACTACGTTGGGTTTGGTTTGATTGAAGTTTGAACGGATTAAAGAAGCTTGATTTTCATGAATTCCTCCCAATCCCAATCCCAATTGTGGTCGACCGTTCGAATCCCGCCCAGTTGCATCACTTCTGCTCTTTTGTTTTGACCGACGTCATCTTTTGCGGGATTTCTGCCACTGTGTTTTTGACCAGAGACTGTGGACTTGGGGATCCCCTATTTTGGCCTTTTCATTGATGATGGGTTTAAGACAGCTGGGCTCTGATTGATTGCCATGGGGGCGTGAATTTCCCCGTCAAAAGGCCATGTACAGTGGTCGTTTTCTTCTGAGCGCGCAATCTCCAGACAGGATGGATGGAGGGATTTGAACGTACTGTAGAAGAAGAGGAGTTCAAGTCGGGTTTTTCTGCGTAGGAGGCTCTCCATATCGAGGCTTTAGGAATCGTAAACAGGGATGGTTTTGTGGATTTTGTT_-_ATGGCGGAGAATGCGCCTGCTTTAATTACGGCTTTGAATTCCATTCAGGCACTTGGCCGGGGGTTCGATGTTACGTCTGATATCCGATTTCTTTACTGCAAGGGTGCTGCCGGGTCTCGGCTTGTAGTGATAGACGAGGAGAACACCAAGGATCTTGCTCTGCCTTGCGATTTGATTTTACCCAATGTGCCCGTCGAGGTCGCCTGCTACGCTGGAGAACGCAAAAGAAAACAGACGGGCGTTCTTGACTTCCCCCAGATGGCGGAGGAATTCAATAAAGTCGTTGGCCTGTCTGGGAGGATCCCTCGGGGGAGCTTTAATGCCGCGTTCAATTTCTCTGGTTCCTGGGAATCCGATGCTGTGTCCACCAAGAGTCTAGCAATGGATGGAATGTTTATAGCATTATATAGGGTTTGCTTGTCGAAATCCGCGTTGGTATTGTGCCCTGAAGTCAAGCGTGCGGTTCCAAATACATGGGAACCAGCCTCTTTAGCAAGCTTCATTGAAAATTTTGGAACCCATATTATTATATCTGTGACAATTGGTGGTGGAGATGTGATATACGTTAAACAGCACCACTCATCTCCACTATCTTCAACAGACATTGAGAATTATGTAAAAGAGATTGCTGGCCAAAGATTTTCAGATTCGGAAAGTAATAGCAGCTTTGGAGTAAGCACATTGAAAGACAAGGATGTTACAATCATATTCAGAAGGAGAGGAGGTGATGATCTTGTCCAAAGTCACAAAGTTTGGGTGGATACTATTGGCCGTAATCCTGATGTTATCAATATGTCATTTGTACCTGTAGTATCTCTGTTGGAAGGGCTTCCTGGAAAGGACCATCTCAGACGTGCTATTGATCTCTACCTAGAATACAAACCTCCAATCGAAGAGCTTCAGTATTTCTTGGAATTTCAAGTACCTAGTACATGGGCTCCCCTTTCCAGTGACTTGCCAGGACAAGAAAGGAAGGAACCAGTATGCCCAACACTGCAATTCAGTTTGATGGGTCCTAAGCTTCATGTTAGCACATCTCAGGTAACTGTTGGTCGAAAACCAGTGACAGGGCTTCGGTTATGCCTTGAGGGAAGGAAGCAAAACAGACTTGCAATTAATTTGCAACATTTAGTCTCTCTACCCAAAATCCTACAGCCACACTGGGATGCACATGTTGCAATTGGGCCTCCTAAGTGGCAAGGACCAGAAGAGCAAGATAGTAGATGGTTTGAACCTGTTCAATGGAAGAACTTTTCACATGTCAGCAGTGCTCCTGTAGAGAACAGTGAAACATGGATAGGGGACCTCTCTGGGGTTTATATTGTTACTGGAGCACAACTTGGTGTCTGGGATTTTGGGAATAAAAGTGTTTTGCATCTCAGGCTTTTATTTTCTAAGGTTCCAGGTTGTACCATACGGAGATCAGTATGGGATCATACACCTGTATCACATCAAAAGGTTGGCATGCATACATCAAACCAATCAGCATTGAAGATCTCAGGTAATCCCAGTTCCGGATCAACTGTCCAAATAGGAAAGCTGGCAAAGTTCGTTGATGTGACAGAGATGACCAAAGGGCCTCAAGATATGCCTGGCCATTGGTTGGTCACTGGTGCAAAGTTGGGGGTTGAGAAAGGAAGGATTGTATTGCGTGTAAAATATTCCCTCTTAAATTACTAA___GATATGAGAGACGAATGTGATTGGATGATGATTGAAATATGCCAGTGCTTGGCTGCACAAGGTTGTATACGAATGTAGAGAACAGGAGCATCACCTTCTCATGTAGCAGAGTTTTAAACAGCATCTATTCGGAAAATTCTTTTCACAGGTCGGTGTGTAAAACACTTCATGGGGTTTCTCAATGCTAGTGTTCATTTGTTTCTGTCTATCAAGACTTCCCAACGGGATTTATAATTGGAGGCTTGCATTCTTGAATCCGGTTGTATATTGCTGTTAACAAACTGTCCTGATGGACTGTATTGTGATTTTTATGGCACTAATAGGAATATGAGAAAGTCGTGCCAACAATTTTTTTTCATAACTTTTCTTTATTGCTTATTTGCCTTTTTGTCGTCTAAG

Fln Alignment:

Contig2374___NAPALITAL-NSIQALGRGFDVTSDIRFLYCKGAAGSRLVVIDEENTKDLALPCDLILPNVPVEVACYAGERKRKQTGVLDFPQMAEEFNKVVGLSGRIPRGSFNAAFNFSGSWESDAVSTKSLAMDGMFIALYRVCLSKSALVLCPEVKRAVPNTWEPASLASFIENFGTHIIISVTIGGGDVIYVKQHHSSPLSSTDIENYVKEIAGQRFSDSESNSSFGVSTLKDKDVTIIFRRRGGDDLVQSHKVWVDTIGRNPDVINMSFVPVVSLLEGLPGKDHLRRAIDLYLEYKPPIEELQYFLEFQVPSTWAPLSSDLPGQERKEPVCPTLQFSLMGPKLHVSTSQVTVGRKPVTGLRLCLEGRKQNRLAINLQHLVSLPKILQPHWDAHVAIGPPKWQGPEEQDSRWFEPVQWKNFSHVSSAPVENSETWIGDLSGVYIVTGAQLGVWDFGNKSVLHLRLLFSKVPGCTIRRSVWDHTPVSHQ---KVGMHTSNQSALKISGNPSSGSTVQIGKLAKFVDVTEMTKGPQDMPGHWLVTGAKLGVEKGRIVLRVKYSLLNY
Q9C7N2______________SSEALTTTLRNAIQALGRGFDVTSDVRLLYCKGAPGSRLVRIEEGQNRDLELSHGFLLPNVPADIDCSRGNSGTQRISVCSFHEMAEEFNVRSGVKGNIPLGCFNAMFNYTGSWQVDAASTKSLALVGYFIPLYDVKLAKLTLVLHNEIRRAVPSSWDPASLASFIENYGTHIVTSVTIGGRDVVYIRQHQSSPLPVSEIENYVNDMIKHRFHEAESQSITGPLKYKDKDITVIFRRRGGDDLEQSHARWAETVPAAPDIINMTFTPIVSLLEGVPGLRHLTRAIELYLEYKPPIEDLQYFLDYQIARAWAPEQSNL---QRKEPVCSSLQFSLMGPKLFISADQVTVGRKPVTGLRLSLEGSKQNRLSIHLQHLVSLPKILQPHWDSHVPIGAPKWQGPEEQDSRWFEPIKWKNFSHVSTSPIEHTETHIGDLSGVHIVTGAQLGVWDFGSKNVLHLKLLFSKVPGCTIRRSVWDHTPVASSGRLEPGGPSTSSSTEEVSG--------QSGKLAKIVDSSEMLKGPQDLPGHWLVTGAKLGVEKGKIVLRVKYSLLNY

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
2276	14		85		0.993533
2277	14	85			0.993533
2278		85		14	0.993533
2279		85	14		0.993533
2280		85		14	0.993533
2328	85		14		0.993533
2329	85			14	0.993533
2331		14	85		0.993533
2337	83		16		0.994512
2338	83		16		0.994512
2340	83	16			0.994512
2341	16		83		0.994512
2342		16		16	0.988813
2348		16		83	0.994512
2349	16	83			0.994512
2350		83	16		0.994512
2356			16	83	0.994512
2357		83		16	0.994512
2363	16			83	0.994512
2365			16	83	0.994512
2427	88		11		0.923564
2438	88		11		0.923564
2510		40		60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2462	2480	ATTGGG ATTGGG ATTGGG A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain