SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2370

Length: 2586 nt

UniGene Fasta

>sp_v3.0_unigene2370
TGCTTAAGCAGTGGTATCAACGCAGAGTACGAGGGGGAGCTAGGAAGGAACCGAACAAGTCCATGATCAACTCTCTCCTCAGACATGGACTGCTCAACGAATTCAAATTTCTCTCACTAATCTTAGTCCACACCCGAAGAATAGCCAGTGCACTTTACATCAATGAAATCCTCTGATCTAAGCATCTAAACCCTTAAGGGCTTCGGTAAACAGGACCCGAAGAATAGGTCTCCAATGAAATCCTCTGATCTGCTCATGTAAAATCCACCGCCCCTCCACAAGGGCCTCGGCAAAGATGACGAAGTTGGAGGCTGTGAACAGCAATGGCAGGGAGGGGGATAGGGATCCGACGGGTGGTTTGCCTCTGGTGATCGCGCTGAATTGCCTGGACGACTGCAGATTCGAAGAAGAAACCCTCCGGGGCATCGCCCTCGTCCAGCATGTGGAGCTCTCACGCATCGCAGACGGGCGCATAGAGTCGGCCATGGCTGTGCTTCTTCATTCCCTCGCTTATCTCCCCCGGGCTGCTCAGAGGAGGCTTCAGCCATGGCAACTGATCCTCTGCCTCGGGTCGTCCGACAAGGCCGTCGATTCCGCCCTCGCCACGGATCTAGGGTTGCAGCTCCTCCATGTCGACACAGCCAGGGCCGAGGAGGTGGCCGATACTGTCATGGCCTTGTTGCTCGGACTGATCCGTCACACGCACTTGCTGTCGAAACAGGGCTTTTCCAGTTCCGGTTGGCTTGGATCGCTCCAGCCCCTCTGCCGGGGTATGCGCCGCTGCCACGGTCTCGTGCTTGGGATAATCGGTCGATCGGCCTCGGCCTGCGCTCTGGCCACCAGGAGCCTGGCGTTTAAGATTAGAGTCCTCTACTACGATTGCGAAGAGGTTAATAAGGGAAAAGCTGTGAGAGGGCGCAGATCTTTCCCCCCAGCTGCCAAACAGATGGATACTCTTAATGATTTGCTTTCTGCAAGTGACCTTGTATCGCTCCACTGTGCTGTGACAAATGAAACACTACAGATTCTCAATCTTGAAACTTTGCAACACATAAAGCCAGGGGCTTTTATTGTGAATACCAGCAGTAGCCACTTATTGGATGATTGTGCCCTAAAACAACTTTTAATAGATGGAACTGTGGCGGGATGTGCGCTGGATGGTGCAGAAGGTCCTCAGTGGATGGAAGCATGGGTAAGAGAAATGCCAAATGTGCTGATTCTTCCACGCAGTGCTGATTACAGTGAAGAGGTATGGATGGAAATACGTGAGAAGGCTGTGTCAATATTGCACTCTTTCTTCCTTGATGGTGTGATTCCTAGCAATGCAGTTTCTGATGAAGAGGAGGATTTAAAAGAAGCTGCATCCCAAGAAGAGAAATCAGAGAAACAGGATAAAGATAAACTTATAGGTGCTCGTGATGGAGAACAACTGGGTGATGAAAGTCAAACGAGTCCAGAATTTCGGCAGCAACAGGCTTATTATCAATCACAGGAGCAGCGCTTGCAATCTCAGGATTCTGGTATTTCACAGAACTCTGGAGGTCAACGTGAAGTGAGACATGGTAGATCAGGAAAGAAAGGCAAAAAGAGGCCTGGACGACGCAAATCACAGCAAAAGTCAGATTCTACTGTTTTACTAGAACGGGAAAATAATTGTGTAGCTTTGCAACGAGATGACAATGGTGCTAGTGTAAGTGGAAGAGACCAAGTTGTTAGTTCAAGTTCACGGTTTGCTTCACCTGAGGATTCAAGGCATAAACGTGGAGGTGATGTTGGGTCAACAGTTGACACAGCATCTGAGAAACAGGCAGTAACTAGTAAAGGACCTTATGGTCAAACTGGTGACCTGCTAAAAGATGGGCTTGTTATATCTTTGCGTGCAAAAGACCGCCCTGGATACCATGTATCCAGACAGCGAGGTCCTGGTGGTGGTTGGTTTCTAGACACCATGTCTAATGTGACGAAAAGAGATCCAGCTGCACAATTTCTTGTTGTTTTCCGAAGCAAGGATCGGATTGGTTTGCGTTCCCTTGCAGCTGGAGGCAAGTTGTTGCAGGTAAATAGAAGAATGGAGCTTGCATTTGCAAGTCACAATTTTGATGCATGGGAGAATTGGATTTTGGAAGGCTCAACATTGGAGGAATGCAGGCTAATAAATAGTAGAATTCCCATGGTGGCATTGGATGTGTCTATCGAGATCCTGGCTGCTGTAAGTGAAGAAGATGGTATTGCTCGATGGCTCAGCTGATGAATCACCCTTGTTTGAATGCATGATTTTCTGTATTGTTATTGGCTCTATTTAATGATGCCTGTGGATTATTGTAGATTATACGGTTTGTGATAACCAGACAGAGGCCTTTCTGGTCTGTTAAAAAGCCATTGTATAATAATTTTCATTTGGTAGGCTGCGCTTTCTTGTGTGAGGCGATGATATAGTTTCAGAGTTCATTTTTTTTTTTTTTAATTTTATCCAGCGTTTACTCATCCATTGTATCAAATGAGTCCTTGCATAACATCTAAAATTTGCAGTGTGAACTAATTTAACATGCATGGTTATAGAAAGCTATTATTTGAATGATTTCTCAG

Ace file of the UniGene sp_v3.0_unigene2370

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Carboxy-terminal binding protein n=1 Tax=Larix gmelinii RepID=B3XZL7_9CONI	-	-	86%
FL-Next	tr=Carboxy-terminal binding protein; Larix gmelinii.	-	-	94%
Sma3	Carboxy-terminal binding protein	-	-	-

Source	Gene names
Sma3	LgAN;

Source	GOs	Term	Type	Identity
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01510.1	AN NAD(P)-binding Rossmann-fold superfamily protein chr1:187235-189836 FORWARD LENGTH=636	60%
RefSeq	Arabidopsis thaliana	NP_563629.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002320824.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B3XZL7

Fln msg:

Fln protein: MTKLEAVNSNGREGDRDPTGGLPLVIALNCLDDCRFEEETLRGIALVQHVELSRIADGRIESAMAVLLHSLAYLPRAAQRRLQPWQLILCLGSSDKAVDSALATDLGLQLLHVDTARAEEVADTVMALLLGLIRHTHLLSKQGFSSSGWLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKIRVLYYDCEEVNKGKAVRGRRSFPPAAKQMDTLNDLLSASDLVSLHCAVTNETLQILNLETLQHIKPGAFIVNTSSSHLLDDCALKQLLIDGTVAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIREKAVSILHSFFLDGVIPSNAVSDEEEDLKEAASQEEKSEKQDKDKLIGARDGEQLGDESQTSPEFRQQQAYYQSQEQRLQSQDSGISQNSGGQREVRHGRSGKKGKKRPGRRKSQQKSDSTVLLERENNCVALQRDDNGASVSGRDQVVSSSSRFASPEDSRHKRGGDVGSTVDTASEKQAVTSKGPYGQTGDLLKDGLVISLRAKDRPGYHVSRQRGPGGGWFLDTMSNVTKRDPAAQFLVVFRSKDRIGLRSLAAGGKLLQVNRRMELAFASHNFDAWENWILEGSTLEECRLINSRIPMVALDVSIEILAAVSEEDGIARWLS*

Protein Length: 652

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGAGGGGGAGCTAGGAAGGAACCGAACAAGTCCATGATCAACTCTCTCCTCAGACATGGACTGCTCAACGAATTCAAATTTCTCTCACTAATCTTAGTCCACACCCGAAGAATAGCCAGTGCACTTTACATCAATGAAATCCTCTGATCTAAGCATCTAAACCCTTAAGGGCTTCGGTAAACAGGACCCGAAGAATAGGTCTCCAATGAAATCCTCTGATCTGCTCATGTAAAATCCACCGCCCCTCCACAAGGGCCTCGGCAAAG_-_ATGACGAAGTTGGAGGCTGTGAACAGCAATGGCAGGGAGGGGGATAGGGATCCGACGGGTGGTTTGCCTCTGGTGATCGCGCTGAATTGCCTGGACGACTGCAGATTCGAAGAAGAAACCCTCCGGGGCATCGCCCTCGTCCAGCATGTGGAGCTCTCACGCATCGCAGACGGGCGCATAGAGTCGGCCATGGCTGTGCTTCTTCATTCCCTCGCTTATCTCCCCCGGGCTGCTCAGAGGAGGCTTCAGCCATGGCAACTGATCCTCTGCCTCGGGTCGTCCGACAAGGCCGTCGATTCCGCCCTCGCCACGGATCTAGGGTTGCAGCTCCTCCATGTCGACACAGCCAGGGCCGAGGAGGTGGCCGATACTGTCATGGCCTTGTTGCTCGGACTGATCCGTCACACGCACTTGCTGTCGAAACAGGGCTTTTCCAGTTCCGGTTGGCTTGGATCGCTCCAGCCCCTCTGCCGGGGTATGCGCCGCTGCCACGGTCTCGTGCTTGGGATAATCGGTCGATCGGCCTCGGCCTGCGCTCTGGCCACCAGGAGCCTGGCGTTTAAGATTAGAGTCCTCTACTACGATTGCGAAGAGGTTAATAAGGGAAAAGCTGTGAGAGGGCGCAGATCTTTCCCCCCAGCTGCCAAACAGATGGATACTCTTAATGATTTGCTTTCTGCAAGTGACCTTGTATCGCTCCACTGTGCTGTGACAAATGAAACACTACAGATTCTCAATCTTGAAACTTTGCAACACATAAAGCCAGGGGCTTTTATTGTGAATACCAGCAGTAGCCACTTATTGGATGATTGTGCCCTAAAACAACTTTTAATAGATGGAACTGTGGCGGGATGTGCGCTGGATGGTGCAGAAGGTCCTCAGTGGATGGAAGCATGGGTAAGAGAAATGCCAAATGTGCTGATTCTTCCACGCAGTGCTGATTACAGTGAAGAGGTATGGATGGAAATACGTGAGAAGGCTGTGTCAATATTGCACTCTTTCTTCCTTGATGGTGTGATTCCTAGCAATGCAGTTTCTGATGAAGAGGAGGATTTAAAAGAAGCTGCATCCCAAGAAGAGAAATCAGAGAAACAGGATAAAGATAAACTTATAGGTGCTCGTGATGGAGAACAACTGGGTGATGAAAGTCAAACGAGTCCAGAATTTCGGCAGCAACAGGCTTATTATCAATCACAGGAGCAGCGCTTGCAATCTCAGGATTCTGGTATTTCACAGAACTCTGGAGGTCAACGTGAAGTGAGACATGGTAGATCAGGAAAGAAAGGCAAAAAGAGGCCTGGACGACGCAAATCACAGCAAAAGTCAGATTCTACTGTTTTACTAGAACGGGAAAATAATTGTGTAGCTTTGCAACGAGATGACAATGGTGCTAGTGTAAGTGGAAGAGACCAAGTTGTTAGTTCAAGTTCACGGTTTGCTTCACCTGAGGATTCAAGGCATAAACGTGGAGGTGATGTTGGGTCAACAGTTGACACAGCATCTGAGAAACAGGCAGTAACTAGTAAAGGACCTTATGGTCAAACTGGTGACCTGCTAAAAGATGGGCTTGTTATATCTTTGCGTGCAAAAGACCGCCCTGGATACCATGTATCCAGACAGCGAGGTCCTGGTGGTGGTTGGTTTCTAGACACCATGTCTAATGTGACGAAAAGAGATCCAGCTGCACAATTTCTTGTTGTTTTCCGAAGCAAGGATCGGATTGGTTTGCGTTCCCTTGCAGCTGGAGGCAAGTTGTTGCAGGTAAATAGAAGAATGGAGCTTGCATTTGCAAGTCACAATTTTGATGCATGGGAGAATTGGATTTTGGAAGGCTCAACATTGGAGGAATGCAGGCTAATAAATAGTAGAATTCCCATGGTGGCATTGGATGTGTCTATCGAGATCCTGGCTGCTGTAAGTGAAGAAGATGGTATTGCTCGATGGCTCAGCTGA___TGAATCACCCTTGTTTGAATGCATGATTTTCTGTATTGTTATTGGCTCTATTTAATGATGCCTGTGGATTATTGTAGATTATACGGTTTGTGATAACCAGACAGAGGCCTTTCTGGTCTGTTAAAAAGCCATTGTATAATAATTTTCATTTGGTAGGCTGCGCTTTCTTGTGTGAGGCGATGATATAGTTTCAGAGTTCATTTTTTTTTTTTTTAATTTTATCCAGCGTTTACTCATCCATTGTATCAAATGAGTCCTTGCATAACATCTAAAATTTGCAGTGTGAACTAATTTAACATGCATGGTTATAGAAAGCTATTATTTGAATGATTTCTCAG

Fln Alignment:

Contig2370___MTKLEAVNSNGREGDRDPTGGLPLVIALNCLDDCRFEEETLRGIALVQHVELSRIADGRIESAMAVLLHSLAYLPRAAQRRLQPWQLILCLGSSDKAVDSALATDLGLQLLHVDTARAEEVADTVMAXXXXXXXXXXXXSKQGFSSSGWLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKIRVLYYDCEEVNKGKAVRGRRSFPPAAKQMDTLNDLLSASDLVSLHCAVTNETLQILNLETLQHIKPGAFIVNTSSSHLLDDCALKQLLIDGTVAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIREKAVSILHSFFLDGVIPSNAVSDEEEDLXXXXXXXXXXXXXXXXXLIGARDGEQLGDESQTSPEFXXXXXXXXXXXXXXXSQDSGISQNSGGQREVRHXXXXXXXXXXXXXXXXXXXXDSTVLLERENNCVALQRDDNGASVSGRDQVVSSSSRFASPEDSRHKRGGDVGSTVDTASEKQAVTSKGPYGQTGDLLKDGLVISLRAKDRPGYHVSRQRGPGGGWFLDTMSNVTKRDPAAQFLVVFRSKDRIGLRSLAAGGKLLQVNRRMELAFASHNFDAWENWILEGSTLEECRLINSRIPMVALDVSIEILAAVSEEDGIARWLS
B3XZL7______________MTKMEAVNSNGRDGDRDPAGGLPLVIALNCLDDCRFEEETLRGIALVQHVELSRIADGRIESAMAVLLHSLAYLPRAAQRRLQPWQLILCLGSSDKAVDSALASDLGLQLLHVDTARAEEVADTVMALLLGLIRHTHLLSKQGFSSSGWLGSLQPLCRGMRRCHGLVLGIIGRSASACALATRSLAFKMRVLYYDCEEV-KGKAVRGRRSFPPAAKQMDTLNDLLSASDLVSLHCAVTNETLQILNPETLQHIKPGAFIVNTSSSHLLDDCALKQLLIDGTVAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIREKAVSILHSFFLDGVIPSNAVSGEEEDLKEATSQEEKQDKEK---LICARDGEQLGDESQTSPEFRQKQAYYQSQEQRLQSQDSSISQQSGGQREVRHGRSGKKGRKRPGRRKSQQKSDSVVLLERENNCVALQRDDNGASVSGRDPVVSSSSRFASPEDSRHRRGGDVGSTVDTASEKQSVTSKGPYGQTGDLLKDGLVISLRAKDRAGYHVSRQRGPGGGWVLDTMSNVTKRDPAAQFLVVFRSKERIGLRSLAAGGKLLQVNRKMEVAFASHNFDAWENWILEGSTLEECRLINTRSPSVALDVSIEILAAVGEEDGIARWLS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
443		66		33	0.997452
621		14		85	0.993533
892	25		75		0.996473
1557		33		66	0.997452
2374	88		3		0.999079
2427	10		90		0.90298
2432		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain