SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2353

Length: 2220 nt

UniGene Fasta

>sp_v3.0_unigene2353
GTACATTTTTGTAAGCACTCAGATGAAATTTTGAACAGAGAACGTGGGTCACACACCTGATCATCCTCCTATTGGACTGAGAAAATTTCCTCCCTCCAACGAAATTTTTGCCTGAAATGGGGGACGTTTATTTAAGTTTCAATGTAGTGCAAGCAACGAAGACTTAACGGAGGTCTATAAATGTAAGGGCGTGAGGTAGAGTTTGAATGCAGTACAAGTTACGAAGACTGAACTGAGGCCTATAAATACCGTATCTGCATTCACAGCCATTATTGCAGAGAAGCCATCTGGCTCAAGCAAAATAACTTCCTTACAGATGGAGCTTAAGAGAAGCTATGTTCTTCTTTTGTTGGGGTGCTTGATGTTGTTCGGGGTAAAAGTGGAGTGCCGGAAGGGGAGTTGGTCATTCAGTTATGCGGCCCCTTCATGCCGAGCGGAGAGCGTATCGATTGCAGAGTATGGAGGGGTGGGGGATGGAACCACTGTAAACACCGAAGCTTTTCGGAAAGCAATTGATCATTTGAGCGAATTCTCGGAAAAAGGAGGAGGCCAGCTTTACATTCCGCCAGGTAGATGGCTAACTGGAAGCTTCAATCTCACAAACCACTTCACTCTTTATCTCGATAAAGAGGCTGTCATTCTGGGTTCTCAGGATTTAGAAGATTGGCCGTTAATTCCACCTTTGCCTTCTTATGGAAGGGGCAGAGATGCAGCCGGTCCAAGATATAGCAGCTTGATAAATGGTTATAACCTTACAGATGTTGTGATAACAGGTGACAATGGTACTATAGATGGGCAAGGTGCAATTTGGTGGCAAAAATTCCACCAAAAAAAATTGAAAAACACACGAGGTTACTTGGTAGAATTGATGTACTCCACTGATATAATAATTTCAAATTTAACTTTCCTAAACTCACCTGCATGGAACTTACACCCAGTGTACAGCAGCAATATCCTCATTAAGTATGTGACTATCCTTGCACCACTTGACTCACCAAACACCGATGGAATTGATCCAGATTCCTGTTCATATGTGCGTATCGAGGACTGCTATGTCGTCTCGGGTGATGATATAGTTGCAATAAAGAGTGGCTGGGATGAATATGGAATCAATTTTGGCATGCCCAGTCAACATATTGTCATCCGTCGTCTTGTTGGCATATCGCCTACAAGTGCTATAATTGCACTAGGCAGTGAAATGTCAGGTGGAATACAGGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCAGGAATAAGAATAAAGACATCCCCAGGAAGAGGTGGGTTTGTAAGAGATATATTTGTCAATCGAATGACTATGGTGAATATGAAGTGGGCATTTACCATGACAGGGTCGTATGGTTCGCATCCTGATAACAAATATAATCCAGATGCTCTTCCCGTGGTAGAAAGGATTAGCTATAGCAATATAGTAGCAACAAATGTAAGTGTGGCAGGGAAACTGGAGGGCATTGCTAAAGCTCCATTCAAAGACATTTGTCTCACAAATGTTACCATTACCATGGCGGCCAAGGCCAAAAAATATCCATGGAACTGCACTTATATTCATGGCTTATCAAATACTGTATATCCACAGCCATGTAGCCTACTCGAGGAAAAACCAGCAGAAGGGGATGCATTCTGTCCCAGTCCTCATGAACTTCACACCAGAGAAGAAAATAGCTTACAGCATTGCTCTTATAGTAGCAGCCATTAATCGGTTCTATAACTTTAAACTTTCCCAGTTTAAGCAAGATCAAAAAAGCTTAGGCATGCTTTTGTCTTCCCCACAGTATCTGGAACAGGGATACGATGTTCAATATAGTCTATAGTAGATGAAGTGTATCAGTCTATATTAATCTCTTTCTGCAGCTTTCTTACCTTCTTTACGTGTATAATTTCAATTGCACGTTTTCTTTACCCAAATAAAGGGGATTGAAGAGCTTATTGTTGTCTATGATCTTCAAATCATGGGACAACGATCTTCAAATCATTTCTCATGAGATGAGAAGTATTTGAGTCTTTTCTAAACTTCTTTATCATATTTTTACTGTTTAAATTTTCTTCTTTAGAGCCAAAGGATGGCTGCTGTCCATTACTTTAAAGGTTTGTTATTAAGGTTTACACAAACTTAAATTTGCTTGTATTAGGGATTATCAATACAATGCACCTCCTAATAAATTGAAGATGAAAATTACCAAATAGTTCAGT

Ace file of the UniGene sp_v3.0_unigene2353

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61490.1	Pectin lyase-like superfamily protein chr3:22758439-22760137 FORWARD LENGTH=476	60%
RefSeq	Arabidopsis thaliana	NP_001190154.1	polygalacturonase-like protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002299511.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg:

Fln protein: MELKRSYVLLLLGCLMLFGVKVECRKGSWSFSYAAPSCRAESVSIAEYGGVGDGTTVNTEAFRKAIDHLSEFSEKGGGQLYIPPGRWLTGSFNLTNHFTLYLDKEAVILGSQDLEDWPLIPPLPSYGRGRDAAGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNLHPVYSSNILIKYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGINFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIHAINSEAGIRIKTSPGRGGFVRDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLTNVTITMAAKAKKYPWNCTYIHGLSNTVYPQPCSLLEEKPAEGDAFCPSPHELHTREENSLQHCSYSSSH*

Protein Length: 471

Fln nts: GTACATTTTTGTAAGCACTCAGATGAAATTTTGAACAGAGAACGTGGGTCACACACCTGATCATCCTCCTATTGGACTGAGAAAATTTCCTCCCTCCAACGAAATTTTTGCCTGAAATGGGGGACGTTTATTTAAGTTTCAATGTAGTGCAAGCAACGAAGACTTAACGGAGGTCTATAAATGTAAGGGCGTGAGGTAGAGTTTGAATGCAGTACAAGTTACGAAGACTGAACTGAGGCCTATAAATACCGTATCTGCATTCACAGCCATTATTGCAGAGAAGCCATCTGGCTCAAGCAAAATAACTTCCTTACAG_-_ATGGAGCTTAAGAGAAGCTATGTTCTTCTTTTGTTGGGGTGCTTGATGTTGTTCGGGGTAAAAGTGGAGTGCCGGAAGGGGAGTTGGTCATTCAGTTATGCGGCCCCTTCATGCCGAGCGGAGAGCGTATCGATTGCAGAGTATGGAGGGGTGGGGGATGGAACCACTGTAAACACCGAAGCTTTTCGGAAAGCAATTGATCATTTGAGCGAATTCTCGGAAAAAGGAGGAGGCCAGCTTTACATTCCGCCAGGTAGATGGCTAACTGGAAGCTTCAATCTCACAAACCACTTCACTCTTTATCTCGATAAAGAGGCTGTCATTCTGGGTTCTCAGGATTTAGAAGATTGGCCGTTAATTCCACCTTTGCCTTCTTATGGAAGGGGCAGAGATGCAGCCGGTCCAAGATATAGCAGCTTGATAAATGGTTATAACCTTACAGATGTTGTGATAACAGGTGACAATGGTACTATAGATGGGCAAGGTGCAATTTGGTGGCAAAAATTCCACCAAAAAAAATTGAAAAACACACGAGGTTACTTGGTAGAATTGATGTACTCCACTGATATAATAATTTCAAATTTAACTTTCCTAAACTCACCTGCATGGAACTTACACCCAGTGTACAGCAGCAATATCCTCATTAAGTATGTGACTATCCTTGCACCACTTGACTCACCAAACACCGATGGAATTGATCCAGATTCCTGTTCATATGTGCGTATCGAGGACTGCTATGTCGTCTCGGGTGATGATATAGTTGCAATAAAGAGTGGCTGGGATGAATATGGAATCAATTTTGGCATGCCCAGTCAACATATTGTCATCCGTCGTCTTGTTGGCATATCGCCTACAAGTGCTATAATTGCACTAGGCAGTGAAATGTCAGGTGGAATACAGGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCAGGAATAAGAATAAAGACATCCCCAGGAAGAGGTGGGTTTGTAAGAGATATATTTGTCAATCGAATGACTATGGTGAATATGAAGTGGGCATTTACCATGACAGGGTCGTATGGTTCGCATCCTGATAACAAATATAATCCAGATGCTCTTCCCGTGGTAGAAAGGATTAGCTATAGCAATATAGTAGCAACAAATGTAAGTGTGGCAGGGAAACTGGAGGGCATTGCTAAAGCTCCATTCAAAGACATTTGTCTCACAAATGTTACCATTACCATGGCGGCCAAGGCCAAAAAATATCCATGGAACTGCACTTATATTCATGGCTTATCAAATACTGTATATCCACAGCCATGTAGCCTACTCGAGGAAAAACCAGCAGAAGGGGATGCATTCTGTCCCAGTCCTCATGAACTTCACACCAGAGAAGAAAATAGCTTACAGCATTGCTCTTATAGTAGCAGCCATTAA___TCGGTTCTATAACTTTAAACTTTCCCAGTTTAAGCAAGATCAAAAAAGCTTAGGCATGCTTTTGTCTTCCCCACAGTATCTGGAACAGGGATACGATGTTCAATATAGTCTATAGTAGATGAAGTGTATCAGTCTATATTAATCTCTTTCTGCAGCTTTCTTACCTTCTTTACGTGTATAATTTCAATTGCACGTTTTCTTTACCCAAATAAAGGGGATTGAAGAGCTTATTGTTGTCTATGATCTTCAAATCATGGGACAACGATCTTCAAATCATTTCTCATGAGATGAGAAGTATTTGAGTCTTTTCTAAACTTCTTTATCATATTTTTACTGTTTAAATTTTCTTCTTTAGAGCCAAAGGATGGCTGCTGTCCATTACTTTAAAGGTTTGTTATTAAGGTTTACACAAACTTAAATTTGCTTGTATTAGGGATTATCAATACAATGCACCTCCTAATAAATTGAAGATGAAAATTACCAAATAGTTCAGT

Fln Alignment:

Contig2353___MELKRSY---VXXXXXXXXXFGVKVECRKGSWSFSYAAPSCRAESVSIAEYGGVGDGTTVNTEAFRKAIDHLSEFSEKGGGQLYIPPGRWLTGSFNLTNHFTLYLDKEAVILGSQDLEDWPLIPPLPSYGRGRDAAGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHQKKLKNTRGYLVELMYSTDIIISNLTFLNSPAWNLHPVYSSNILIKYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGINFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIHAINSEAGIRIKTSPGRGGFVRDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLTNVTITMAAKAKKYPWNCTYIHGLSNTVYPQPCSLLEEKPAEGDAFCPSPHELHTREENSLQHC
B8LQW0______________MDFKRTHLFQVLLLLGCLIVLGVKVECQKGSWSFSYVAPSCRAQSVSIAEFGGVGDGTTVNTEAFRKAIEHLSEFSETGGGQLYIPPGRWLTGSFNLTDHFTLYLHKEAVILGSQDLEDWPLIPPLPSYGMGRDAPGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHKKILKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYDPNALPAVERISYSNIVATNVSVAGKLDGIANAPFKDICLTNVTITMAAKSKKYPWNCTYIHGLSNAVYPQPCSLLEERPAEGDAFCPSPQELDTTEENSLQHC

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
235	80		20		0.995493
254	40		60		1.0
317		66	33		0.997452
599			11	88	0.999952
788		45		55	1.0
1065		10		90	0.90298
1169	11		88		0.923564
1371		11		88	0.923564
1448	14		85		0.993533
1512		10		90	0.90298
1518	90			10	0.90298
1587		11		88	0.923564
1951		66	33		1.0
1968		63	36		1.0
1979	66		33		1.0
1980	38		61		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain