SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2344

Length: 1687 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2344

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylcoumaran benzylic ether reductase homolog TH6 n=4 Tax=Pinaceae RepID=Q9M523_TSUHE	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	NmrA-like	IPR008030	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39230.1	NmrA-like negative transcriptional regulator family protein chr4:18266024-18267604 REVERSE LENGTH=308	63%
RefSeq	Arabidopsis thaliana	NP_195634.1	NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002313788.1	phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUA2

Fln msg:

Fln protein: MANSSKILIIGGTGYIGRHISKASLALGHPTFLLVRETSASNPEKAKLLESFKASGAIILHGSLEDHASLVEAIKKVDVVISALKGPQLTDQQNIIKAIKEVGTIKRFLPSEFGNDVDRTHAVEPAKTMFATKAKIRRAIEAEGIPYTFVSSNCFAGLFLPSLGQPGLTAPPRDKVVISGDGNAKVVFVKEEDIGTFTIKAVDDPRTLNKILYLRLPANTYSLNELVALWEKKIGKSLEKTYIPEEEVLKKIAESPFPLNAIMSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVDEYLSQYV*

Protein Length: 309

Fln nts: ACCACTGCTTAAGCAGTGGTATCAACGCAGAGCACGCGGGATAAGTAACTTCGTCTTTGTTTAGGAATGGAGGCGCGATAGATCCCAGAGGGCGAGAATCACCGACCTTCACATATTTATTCCAATTCTAATATCTCTACTCGTTGTCTACCTGATTTTTCAGTGGCAAACCAACTTGACAGGGTTGGAC_-_ATGGCCAACAGCAGCAAGATTCTGATTATTGGAGGAACAGGCTACATTGGTCGTCATATATCCAAAGCCAGCCTTGCTCTTGGCCATCCCACATTCCTTCTTGTCAGAGAGACCTCTGCTTCTAATCCTGAGAAGGCTAAGCTTCTGGAATCCTTCAAGGCCTCAGGTGCTATTATACTCCATGGATCTTTGGAGGACCATGCAAGTCTTGTGGAGGCAATCAAGAAAGTTGATGTAGTTATCTCGGCTCTCAAGGGACCACAGCTGACGGATCAACAGAATATTATCAAGGCTATTAAGGAGGTTGGAACCATCAAGAGGTTTTTGCCATCTGAGTTCGGGAATGACGTTGATAGAACCCATGCAGTGGAGCCTGCAAAGACCATGTTTGCTACCAAAGCGAAAATTCGCAGGGCCATTGAGGCAGAAGGCATCCCTTACACATTTGTCTCTAGCAACTGTTTTGCTGGGCTTTTCTTGCCAAGTTTGGGGCAGCCGGGCCTTACTGCCCCGCCAAGGGATAAAGTTGTGATATCTGGAGATGGAAATGCCAAAGTTGTTTTTGTGAAGGAGGAGGATATAGGGACATTCACCATCAAGGCAGTGGATGACCCTAGAACTCTAAACAAGATCCTGTATTTGAGGCTTCCTGCCAACACATATTCTCTTAACGAGCTTGTAGCTCTGTGGGAGAAGAAGATTGGCAAGTCTCTGGAGAAGACCTATATACCAGAGGAAGAGGTCCTGAAAAAAATTGCAGAGTCGCCATTCCCACTCAATGCTATAATGTCAACCGGCCACTCTATTTTTGTGAAAGGGGATCAAACAAATTTTGAAATCGGACCCGATGGTGTGGAGGCTAGTCAACTCTACCCAGAGGTGAAATACACTACTGTTGATGAATACCTCAGCCAGTATGTCTGA___GGTTGGTTGTGAGAAATGCTTGGCAGAATGATAATGGAGGCAAGTGCCTTATCCAGTTTAGATAAGGCTGTTGCTACTGTTACATTTTTAGTGATTAATACGAGCAATAACCAAAGCTGACACTCCTTAATTAGCAGTGGAGACAAATTGTGGCAAATAGTTCATTAGGTAGTAGATGCCTTTTGTTTTGTAGGTTAAGGGAGTTGTGTGGATAGCCAATGATCAATCAAAGTTAAGATTAGTCATATCTTGGCTTATTGGCACGTTGCTATTATGTGAAAAATACTACTTCGCTTAAATATACATCTGGGATTTTAATGAGGTTGTTACTGCTTTCTGTTTTGTATGTTAAGGGAGGTGTGTGCATAGCCTTGATCAATCCAGGTAAAGATCATTCATATCTTGGCTTATTGACACGTTGCTATTATGTGAAAAATACCACTTTGATTAAATATACAGTTGGGATTTTACATGGATTTGTATTGCAAACCATGCTGGGATGTTGTCGTCACCCTTTTGCTTCATTGCATTCCCTGTGTGAATATGAGATATTGTCCAAAAATATGTATAGCA

Fln Alignment:

Contig2344___MANSSKILIIGGTGYIGRHISKASLALGHPTFLLVRETSASNPEKAKLLESFKASGAIILHGSLEDHASLVEAIKKVDVVISALKGPQLTDQQNIIKAIKEVGTIKRFLPSEFGNDVDRTHAVEPAKTMFATKAKIRRAIEAEGIPYTFVSSNCFAGLFLPSLGQPGLTAPPRDKVVISGDGNAKVVFVKEEDIGTFTIKAVDDPRTLNKILYLRLPANTYSLNELVALWEKKIGKSLEKTYIPEEEVLKKIAESPFPLNAIMSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVDEYLSQYV
A9NUA2______________MANSSRILIIGGTGYIGRHISKASLALGHPTFLLVRESSASNSEKAKLLESFKASGAIILYGSLEDQASLVEAIKKVDVVISAVKGPQLTDQLNIIKAIKEVGTIKRFLPSEFGNDVDKTHAVEPAKTMFASKAKIRRAIEAEGIPYTFVSSNCFAGLFLPSLGQPGLTAPPRDKAVINGDGNAKVVFVKEEDIGTFTIKAVDDPRTLNKILYLRLPANTYSINELVALWEKKIGKTLEKTYIPEEEVLKKIAEAPFPLNAMLSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVEEFLSQYV

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
496	2		97		0.969538
504	2	97			0.972772
514	1			91	1.0
939			92	2	0.992495
1104		96		3	0.984346
1162			97	2	0.999985
1189	1		98		0.995722
1193		98		1	0.99588
1209			96	3	1.0
1297	2			97	0.938918
1446		88	11		0.923564
1447	11			88	0.923564
1448	12		87		0.992554
1449	14	85			0.993533
1451	16			83	0.994512
1452	16			83	0.994512
1455	16		83		0.994512
1465			60	40	1.0
1481		63	36		1.0
1500	9		90		0.999842
1535		37		62	1.0
1589	10			90	0.90298
1590	20		80		0.999996
1591	10		90		0.90298
1607	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain