SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2342

Length: 1485 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2342

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Vitis vinifera RepID=UPI000198426A	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Zinc finger (C3HC4-type RING finger) protein-like	-	-	2.667e-11	-

Source	Gene names
Sma3	AT1G50440; At1g11020; At1g11020/T19D16_25; At1g50440; At1g50440/F11F12_21; B1090H08.45; F11F12.20; GSVIVT00016833001; GSVIVT00016834001; GSVIVT00019427001; LOC_Os11g39130; OJ1007_D04.30; Os01g0610700; Os02g0132300; Os08g0384900; Os11g0604600; OsI_02824; O

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11020.1	RING/FYVE/PHD zinc finger superfamily protein chr1:3676968-3678350 FORWARD LENGTH=321	78%
RefSeq	Arabidopsis thaliana	NP_563883.1	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002309239.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKG1

Fln msg: your sequence is shorter than subject: 308 - 334

Fln protein: MKTEVQLEHRSEHDVNDTDSAPLLQPPSITLADKGNEIDDEESNSSSAASCRICLELEGCDPDDELIAPCLCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRAEVPEDYSLRKLKFRIFVARDVLLVFLAVQTMIALMGGIAYLMDTNGQFRNSFSDGWDRLLSKHPIPFYYCFGVFVFFVILGIGGLIVHCSSVNNNDPCMAGCRNCCYGWGILDCFPASMEACGALLVIFVIIFAILGIAYGLLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGHYTPPKLDPEHEERLKSLKLL*

Protein Length: 309

Fln nts: GTTGGCAAGCTTGGTTGTTCCTCGAGCTATTTTAAGGAAATTTATTTAATTTTAGAGATACCTTTTGCCACGATGGCCGATGATGCATACCTATATATTTCCCCGCAATTCTTGCCAAAATAGAAGTTAAAACACATCCAGAGATTAAAGGCTTCGATGAGCTTCGTTCAAACTATTGGAAGGCTAGTATTGCAGGTGAAATTTATGTCTGGAAACCCTGTCTGCAGGTTTTGGACGCTTGATGTCCGGGAGTGGATGCGTTAAAGTTGTGGCAACTTGGGACTTTTTGTTGCA_-_ATGAAAACGGAAGTGCAATTGGAGCATCGTAGCGAGCACGACGTTAACGATACAGATTCAGCTCCTCTTTTGCAGCCACCGTCAATTACATTGGCCGATAAAGGCAACGAAATTGATGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGAATCTGTCTCGAGTTAGAGGGCTGTGATCCAGATGATGAATTGATAGCTCCTTGCTTGTGCAAGGGCACACAACAATTTGTTCACCGATCATGTCTTGATCACTGGCGCTCTGTGAAGGAAGGGTTTGCATTTTCACATTGCACTACCTGTAAAGCTCAGTTTCATCTGCGGGCTGAAGTACCAGAAGATTACTCATTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTTGTGTTTTTGGCAGTGCAAACAATGATCGCTCTCATGGGTGGCATTGCATACTTGATGGACACAAATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATCCAATACCATTTTATTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTCATAGTGCATTGCTCCTCAGTCAACAACAATGATCCATGCATGGCTGGCTGTCGGAATTGTTGTTATGGGTGGGGCATTTTGGACTGTTTCCCGGCATCGATGGAAGCATGTGGAGCACTCCTGGTCATTTTCGTGATTATTTTTGCTATACTTGGCATTGCCTATGGTCTTCTGGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTCACAAAGGAATATATTGTCGAAGACTTGCATGGACACTATACACCTCCTAAGCTAGACCCGGAACATGAAGAACGTTTGAAGTCCTTGAAGCTTCTGTAG___CCACCCTTTCAAAATGAATATAATATGTAAACTTCAATATGTTCTCTGATGACATTTTTCTTCTAATTGGCTTAAATGTCTTCAAGTATATAATTTTTTGTGCCTGTCAAATCCGACTTCTCTGATAGGCCTGAGGTTGAATTGCTATATACATGAAAGTGCATTTCAATAATGACTTTGCTGCTATAACATGATTGCTTTCCATCCTCGTTTGTATGTAGATAAAGGCAGTCTGCTGGTTTTAATTCAAGCTCCTCAACTGTATGT

Fln Alignment:

Contig2342___DVNDTDSAPLLQPPSITLADKGXXXXXXXXXXXXXXX-----CRICLELEGCDPDDELIAPCLCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRAEVPEDYSLRKLKFRIFVARDVLLVFLAVQTMIALMGGIAYLMDTNGQFRNSFSDGWDRLL--SKHPIPFYYCXXXXXXXXXXXXXXXXXHC--SSVNNN--DPCMAGCRNCCYGWGILDCF-----------PASMEACG----------------------XXXXXXXXXXXXXXXXXXXXXXTMAIQRIWQRHYHILTKRELTKEYIVED-----LHGHYTPPKLDPEHEERLKSLKLL
A9NKG1______________DPSSSSSSPLIPPTQEAVAAGGLLTMERDTIDLEAGPGDQIQCRICLETDGRD----FIAPCKCKGTSKYVHRACLDHWRAVKEGFAFAHCTTCKAPYHLRVHAAADRKWRTLKFRFFVTRDILFIFAAVQLVIASLSYSVYLIDHHQQ-------DWLRLAWGFESKIRFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGVCADCHLPGTICMWTDCAACFESCAGTAGECGTCLGGAGEAGAPILVIVGLVTLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDDEILDSDWNPPPLPTEHVQQLKSLGLL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
371			80	20	0.995493
372		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain