SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2340

Length: 1184 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2340 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulation receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9STM4_RICCO	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	3.779e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	[Tau protein] kinase.	EC:2.7.11.26	-	4.566e-14	-

Source	Gene names
Sma3	8F2.11; AP2_E06.2; AT1G48480; AT2G26730; AT3G02880; AT3G08680; AT3G17840; AT3G50230; AT4G23740; AT5G05160; AT5G16590; AT5G24100; AT5G53320; AT5G58300; At1g48480; At1g64210; At2g26730; At3g02880; At3g08680; At3g17840; At3g50230; At4g23740; At5g05160; At5g1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to symbiotic fungus	GO:0009610	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26730.1	Leucine-rich repeat protein kinase family protein chr2:11388621-11391286 FORWARD LENGTH=658	55%
RefSeq	Arabidopsis thaliana	NP_180241.1	putative inactive receptor kinase [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002324958.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 467 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 282 - 818

Fln protein: MGYLNEVRFWVRFLLVFLVFLPGNSEPIGDKQALLKFLRLVPHGLKLKWNASTSACSDWLGVICNANKTRISELHLPGLGLYGPIPSGTLGNLTELKVLSLRQNRLSGSFPPDFVNLKLLGNLYLQKNMFSGPLPSGLSSLVGLNVLDLSFNHFNGTVPVFLNNLKSLRSLYLQNNSLTGNISNLIFPGLKAFNVTNNDLNGSIPSPLQRFPASSFQGNGLCGTPLPQCIPEVPPPVPPFPLPPPFPPHGKKKSHKLSTGEIVAIAVGGAALCFFVLVCLFL

Protein Length: 283

Fln nts: AGTACATGGGGCTCTGCAATTTGGCGAAGTCTCATGGGTCGAGGGCCGAGAGGCAAAAAGAATGAAAATTTGTCCAATTTTTGCACTCGCAGGGCCTTGCCTTGCACATGCCCGCTTTCTGCCAATCATTTTATAATGAATGTCCTACCTGCAAGGAATCGGCTAAATTAAGCCATAAAGAGAACATTGACAACTTTGGCTGACGAGTGGAAGCCTCGCTGTATCTCAAGCCCCCAAATTGGATGGTTTCAAACAAACAGGAAAAGGCCTGTGCTGCTACCCAAGAAGAAATAAGTAAGCAGCAGGAGATATCATTGTGGGCATAGATTTGTGAAGT_-_ATGGGCTATTTGAATGAGGTGCGCTTTTGGGTGCGCTTTTTGCTTGTATTTCTTGTGTTTTTACCTGGGAATAGTGAGCCCATTGGTGATAAGCAAGCGTTGCTGAAGTTTTTAAGGTTGGTTCCTCATGGGCTAAAACTGAAATGGAACGCTAGCACATCTGCCTGTAGCGACTGGCTGGGAGTTATCTGCAATGCCAATAAAACCCGTATCTCGGAACTTCATTTGCCTGGTCTGGGATTGTATGGGCCGATTCCTTCTGGTACTCTGGGGAATCTGACGGAGCTGAAAGTATTGAGTCTAAGGCAAAACAGGCTTAGTGGGTCATTTCCTCCAGATTTTGTAAACCTGAAGCTTCTAGGCAATCTCTACCTGCAAAAAAATATGTTTTCTGGGCCGCTGCCTTCGGGCCTGTCTTCTTTGGTAGGATTGAATGTGCTGGATCTCTCCTTCAATCATTTTAATGGTACCGTTCCTGTGTTTCTCAACAATCTTAAGAGTCTTAGAAGTCTGTATTTGCAAAACAATTCGCTTACAGGCAATATATCTAATCTGATCTTTCCCGGCCTGAAGGCGTTCAATGTGACCAACAATGATCTCAATGGTTCCATACCCAGCCCCTTGCAACGATTTCCTGCCTCATCCTTTCAAGGGAATGGCCTCTGCGGAACTCCTTTGCCTCAGTGTATACCAGAGGTTCCACCCCCAGTTCCGCCCTTTCCATTACCGCCTCCTTTTCCTCCCCATGGGAAGAAGAAATCACATAAACTGAGCACGGGGGAAATTGTGGCCATAGCAGTAGGGGGTGCTGCCCTTTGTTTCTTTGTTCTTGTTTGTTTGTTCCTTG

Fln Alignment:

Contig2340___DKQALLKFLRLV---PHGLKLKWNASTS--ACSDWLGVICNANKTRISELHLPGLGLYGPIPSGTLGNLTELKVLSLRQNRLSGSFPPDFVNLKLLGNLYLQKNMFXXXXXXXXXXXXXXXXXXXSFNHFNGTVPVFLNNLKSLRSLYLQNNSLTGNISNLI--FPGLKAFNVTNNDLNGSIPSPLQRFPASS---FQGNGLCG
B8LQX6______________DVEALLSFRKALTSDPDGSLLNWTSENSDNVCS-WNGIFCRKRTKRVVAIILPGLGLQGRI-SPSLCSLSLLRVLNLSGNNLTGTIPPEFGQLKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNLSGSIPTSLSNCTSLQGLSIGYNSLTGPIPSVLSLIRNLSLLYFEGNSLSG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
671			22	77	0.999999
705			88	11	0.923564
816	16		83		0.994512
906		16	83		0.994512
987	14		85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
6	18	AACA AACA AACA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain