SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2334

Length: 2125 nt

UniGene Fasta

>sp_v3.0_unigene2334
GGAGCAGCGACATTTCAAGAAGTCAAATCTAACCAGAGCATTCAAAAACTGGTTGAAATGGAGCTTTCACAGGTCGGAGGCCTCAAAAGTCTCGCGAACGACCCCATCAGAGAATTTCACCAGCTAATATACTTCAATGAGTCATTGTTTTTATTATACAGTGATCATCAATAAAGAATACTTCGATCCCAACCCTTTACGAAAGGAAAACACTGTTATTCCCAAAAATGATTCCGTCGTCTTTCCATTGGCGCCTCTGCCAATACACCGATGATATATGAATTTTATATTATATATCAATAGTAACAAGGCTTTCTGCACTGCAGAGCAGCAGCGGGCATTACTCTGTCGTGTTTCTGCAGGGATTTCGAAAACATATAAAACTACATCCATTGTCAACGTTAAGCTCCAACTGGAAAATTCAAAAACCTGCTTTTTGATCCAGACATTATAAATATATTTGGTTTGGAGGAAATTAAAAAAAAGCGTGAGGCAGGTCACAGGTTCGAGTATGGTAACGAATGTGCCGCTGTGTTGCAGAGCCGAGCAGGCGGTTGGTCTCGCCGCTGTGGATTACCCTTTTATTCCCCCTCACAAGTCCATGAAACGGGACTACGTTTTCGTGGTCAATCCTAACGGCGCAAACGGACGTACTGGCAGCGAGTGGAAAAAATTACTTCCCAAGCTGAATGCCGAGCTCGGTAAAGATTGGAATATATGTGAGTCACTGACTACGGGCCCTTCACATGCAGTGGATATTGCTAGAGAGGCCATCAAAGGAGGGGCAGCTGCTGTAGTTGCTGTTGGAGGCGATGGCACCCTTCACGAGGTTTTAAATGGTTTCTTTGAGGATGGAAAACCTGTTCGTGCTCAAGAGGAAGGGGCTGTGCATACGACATCTCTTGGGCTTATTCCTTTGGGGACTGGCTCGGATTTTGCAAGAACATTTGGCTGGAAGAATGATCCATATGAGGCTATTGAACGCATTGCTAAAGGGCAAAAGCAGAGGATTGACGTTGGCCTTGTGGTTGGCAAGGATGATAAGTTTCATTATTTTCTGAACGTTGCAGATATTCATTTAAGTGCAAAGGCTGGTTTCTTTGCTTCCAAGTATAAACGATTTGGAAAATTATGCTATGTTTTTGGTGCCTTGCAAGCATTCATTAGCCATAGCAATCGGGACATGAATATCAAGATAGACAAGGAAGAGTGGAAAAGTTTTCCTAAAGTTACAGCCCTTTGTATAGGAAATGCAAAGTACTTTGGTGGTGGGATGAAGATTACGCCAACAGCTGATCCTTTTAGTGGCAAGTTTGAGGTTGTAGTGCTGCAAGATTTCAAATGGTATGACTTTATCCTGAAACTTCAAAAGCTTTACAAGGGGACACATTTATCAGAGAGAAATGTCTCTACAATAAGTGCTAGTTCCATTGAAGTGGAGGGACTAACTCAACATGATACAAATACAAATGGTGGCATCTATGTTCAGGCTGATGGAGAACATTTAGGATTCCTTCCAAGAAGATTTTTAATGTTACCTGGCACAATTGAGTTTTTGATATAAATTCCTTAAGTCAGCATGAGGAATATGTTCTGGATGTGTGGCCTCTTCAAATTTCATGATCCTCGGCTGCCCAGGTGTGGGCATTTCAGTAAATCAGTCAATAAAATAAACTCGTCTGTGTGATTGGAAAAAACACACTATTATGCATTTTTGTGGCGTTCATTGCAAACATGAAGATTATTTATTAGGCCACAATGCAGAATGCAAAACGTTCAGACTTTCCTCATTTTCTCTTTTGCAAGCAAGACATTCTGACGATTCACAAGTGTACATTGGAGGTGACCATAGAATTGATAATATGTACATCAGCACTGCATTATCAAGGTATGGCCTATAATGCAACGTTATAATAGTTAATCTGGTTGTGAGAGACATTCAGGTGTGTGAATTGTCTGAGTGGATTTGAATCTTTTAAAGCAAGCTAATGCCCTCATCAAAGGAAATGTGAAGTTCCTTGTGATCTCAAAATGATTAATTTCGAATTTTTGTACAGCTCCACTTGACGGTATAATGCTCAAGTAATATTTGACCAATTAATTAAAAACCCTGTATTAACTGTGC

Ace file of the UniGene sp_v3.0_unigene2334

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bmru protein, putative n=1 Tax=Ricinus communis RepID=B9RDX3_RICCO	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	At2g46090; At2g46090/T3F17.26; GSVIVT00026944001; LOC_Os03g03400; Os03g0125400; OsI_09803; OsJ_09241; PHYPADRAFT_56848; POPTRDRAFT_644507; POPTRDRAFT_644509; RCOM_1616380;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	D-erythro-sphingosine kinase activity	GO:0017050	Molecular Function	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Diacylglycerol/lipid kinase	IPR005218	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46090.1	Diacylglycerol kinase family protein chr2:18950919-18953079 FORWARD LENGTH=364	67%
RefSeq	Arabidopsis thaliana	NP_566064.1	diacylglycerol kinase-like protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002302603.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD61

Fln msg: your sequence is longer than subject: 351 - 126

Fln protein: MVTNVPLCCRAEQAVGLAAVDYPFIPPHKSMKRDYVFVVNPNGANGRTGSEWKKLLPKLNAELGKDWNICESLTTGPSHAVDIAREAIKGGAAAVVAVGGDGTLHEVLNGFFEDGKPVRAQEEGAVHTTSLGLIPLGTGSDFARTFGWKNDPYEAIERIAKGQKQRIDVGLVVGKDDKFHYFLNVADIHLSAKAGFFASKYKRFGKLCYVFGALQAFISHSNRDMNIKIDKEEWKSFPKVTALCIGNAKYFGGGMKITPTADPFSGKFEVVVLQDFKWYDFILKLQKLYKGTHLSERNVSTISASSIEVEGLTQHDTNTNGGIYVQADGEHLGFLPRRFLMLPGTIEFLI*

Protein Length: 352

Fln nts: GGAGCAGCGACATTTCAAGAAGTCAAATCTAACCAGAGCATTCAAAAACTGGTTGAAATGGAGCTTTCACAGGTCGGAGGCCTCAAAAGTCTCGCGAACGACCCCATCAGAGAATTTCACCAGCTAATATACTTCAATGAGTCATTGTTTTTATTATACAGTGATCATCAATAAAGAATACTTCGATCCCAACCCTTTACGAAAGGAAAACACTGTTATTCCCAAAAATGATTCCGTCGTCTTTCCATTGGCGCCTCTGCCAATACACCGATGATATATGAATTTTATATTATATATCAATAGTAACAAGGCTTTCTGCACTGCAGAGCAGCAGCGGGCATTACTCTGTCGTGTTTCTGCAGGGATTTCGAAAACATATAAAACTACATCCATTGTCAACGTTAAGCTCCAACTGGAAAATTCAAAAACCTGCTTTTTGATCCAGACATTATAAATATATTTGGTTTGGAGGAAATTAAAAAAAAGCGTGAGGCAGGTCACAGGTTCGAGT_-_ATGGTAACGAATGTGCCGCTGTGTTGCAGAGCCGAGCAGGCGGTTGGTCTCGCCGCTGTGGATTACCCTTTTATTCCCCCTCACAAGTCCATGAAACGGGACTACGTTTTCGTGGTCAATCCTAACGGCGCAAACGGACGTACTGGCAGCGAGTGGAAAAAATTACTTCCCAAGCTGAATGCCGAGCTCGGTAAAGATTGGAATATATGTGAGTCACTGACTACGGGCCCTTCACATGCAGTGGATATTGCTAGAGAGGCCATCAAAGGAGGGGCAGCTGCTGTAGTTGCTGTTGGAGGCGATGGCACCCTTCACGAGGTTTTAAATGGTTTCTTTGAGGATGGAAAACCTGTTCGTGCTCAAGAGGAAGGGGCTGTGCATACGACATCTCTTGGGCTTATTCCTTTGGGGACTGGCTCGGATTTTGCAAGAACATTTGGCTGGAAGAATGATCCATATGAGGCTATTGAACGCATTGCTAAAGGGCAAAAGCAGAGGATTGACGTTGGCCTTGTGGTTGGCAAGGATGATAAGTTTCATTATTTTCTGAACGTTGCAGATATTCATTTAAGTGCAAAGGCTGGTTTCTTTGCTTCCAAGTATAAACGATTTGGAAAATTATGCTATGTTTTTGGTGCCTTGCAAGCATTCATTAGCCATAGCAATCGGGACATGAATATCAAGATAGACAAGGAAGAGTGGAAAAGTTTTCCTAAAGTTACAGCCCTTTGTATAGGAAATGCAAAGTACTTTGGTGGTGGGATGAAGATTACGCCAACAGCTGATCCTTTTAGTGGCAAGTTTGAGGTTGTAGTGCTGCAAGATTTCAAATGGTATGACTTTATCCTGAAACTTCAAAAGCTTTACAAGGGGACACATTTATCAGAGAGAAATGTCTCTACAATAAGTGCTAGTTCCATTGAAGTGGAGGGACTAACTCAACATGATACAAATACAAATGGTGGCATCTATGTTCAGGCTGATGGAGAACATTTAGGATTCCTTCCAAGAAGATTTTTAATGTTACCTGGCACAATTGAGTTTTTGATATAA___ATTCCTTAAGTCAGCATGAGGAATATGTTCTGGATGTGTGGCCTCTTCAAATTTCATGATCCTCGGCTGCCCAGGTGTGGGCATTTCAGTAAATCAGTCAATAAAATAAACTCGTCTGTGTGATTGGAAAAAACACACTATTATGCATTTTTGTGGCGTTCATTGCAAACATGAAGATTATTTATTAGGCCACAATGCAGAATGCAAAACGTTCAGACTTTCCTCATTTTCTCTTTTGCAAGCAAGACATTCTGACGATTCACAAGTGTACATTGGAGGTGACCATAGAATTGATAATATGTACATCAGCACTGCATTATCAAGGTATGGCCTATAATGCAACGTTATAATAGTTAATCTGGTTGTGAGAGACATTCAGGTGTGTGAATTGTCTGAGTGGATTTGAATCTTTTAAAGCAAGCTAATGCCCTCATCAAAGGAAATGTGAAGTTCCTTGTGATCTCAAAATGATTAATTTCGAATTTTTGTACAGCTCCACTTGACGGTATAATGCTCAAGTAATATTTGACCAATTAATTAAAAACCCTGTATTAACTGTGC

Fln Alignment:

Contig2334___MNIKIDKEEWKSFPKVTALCIGNAKYFGGGMKITPTADPFSGKFEVVVLQDFKWYDFILKLQKLYKGTHLSERNVSTISASSIEVEGLTQHDTNTNGGIYVQADGEHLGFLPRRFLMLPGTIEFLI
D5AD61______________MNIKIDKEDWKSFPKVTALCIGNAKYFGGGMKITPTADPFSGKFEVVVLQDFKWYDFILKLQKLYKGTHLSERNVSTISASSIEVEELIEHATNTNGSIYVQADGENLGFLPRRFLMLPGTIDFLI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
862		88		11	0.923564
863		88	11		0.923564
1065		77		22	0.999999
1085		12	87		0.992554
1087			87	12	0.992554
1088		87		12	0.992554
1090	87			12	0.992554
1091	87			12	0.992554
1092		12	87		0.992554
1093	12		87		0.992554
1095	12			87	0.992554
1096	12		87		0.992554
1097	12		87		0.992554
1098		12		87	0.992554
1101		87		12	0.992554
1103		12		87	0.992554
1104	12			87	0.992554
1106	12	87			0.992554
1108	14			85	0.993533
1350		11		88	0.923564
1355		11		88	0.923564
1368			10	90	0.90298
1371	90		10		0.90298
1372	90			10	0.90298
1373	90	10			0.90298
1374			90	10	0.90298
1376			10	90	0.90298
1399	10		90		0.90298
1743	87			12	0.992554
1773	87	12			0.992554
1775	87			12	0.992554
1776		87		12	0.992554
2012		14		85	0.993533
2029			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain