SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2324

Length: 2135 nt

UniGene Fasta

>sp_v3.0_unigene2324
CTGGCCGCCCTCCATCTCCAGGTCGAAGGAATTTCTACACAGAGGAATTCCAAATCCAGGCAGAAGGAATCTCCGGCCAGAAGAGTTCTTTGATCCATGGTTCGCGGGACTGAAATCCTCAAGATGGATCATCAACAAAAGCAATTCTTGCTTGCTGAACATCGGATCGACAGACATTGCAATCGCCGAACAAAACCCGGACTGTCAAGCATGTTTTGTTGGTCTCGTCTCTTCTGTTGAACCTGCTACTTTCTATCATGTTTTGGCCATTCCCGATCCATTGGTCCTCGCACCAGGTAAATCATCGAGATGCAGGAATTGAAGAGGGCGTGACTGATAATAATTCGCAGGCGCTGACATGGAGTAGGCACGCCGCAGAGGAAACAGAGGCAACGGCAGCGTATGATTGTTCTGGTCATGGATATCTCTTCGTCGATACGGTAAATATTGGGGCAGATGATGGGGGAAAAACATTTAACTGCGAATGTAACGACTGCTACACAGGACCCGATTGTTCCCAAATGGTTGCTGATTGCGCAGCAAATGTCGACAGCGGGGATCCTCTGTTCCTAGAGCCCTTCTGGATCAGGAATGCGGAAGCCAGCGCAACAGTGTTCCCGGGGTGGTATCGGATGAGCTATAAAATACAAGACAGTGGAGCAATACAGATATTATCCCCCGAGTTAGAGACTCAAATTCGTGGTATTCATGCGTTGGTGGGAAACGCCGTGACAGAAGGGAGATATATAGTGATTGGAACCGGCTCTAAGCAGCTTATCAACGCTGCAGTTTACAGTCTTTCTCCTAGGCGTGAAGATGCTCAACATCCTGCCCACGTTGTCGCAGTTCCGCCCCATTACGGAACATACAGAACCCAGACTCAAATGTTTGACTCTGCCGACTATAGCTGGGAGGGAGACGCTAGGGCATGGGTAAAACGCTCCAAATCTCTGAACTCGACCAGATTTGTAGAGATTGTAGCGTCTCCAAACAATCCCAGCGGTTCTCTTCAAGAAGGCGTATTAGAGGGACAAAACGTGAGGACTGTTTATGATCATGCCTACTATTGGCCTCACTTCACTGCCATTAATGAACCAGTTAACGAGGACGTGATGCTCTTCACCCTGTCAAAGCTCACTGGACACGCAGGCAGCAGGCTAGGATGGGCTATTGTGAAAGACTTTAATGTGTATCAGAAGATGACTGAATATGTTATTGGGAACACCTTAGGGGTTTCACATGACAGCCAGCTAAGGGCGACTACGTTACTGAAAACAGTAACTGCTGGTTATCAAGGCAAATTGAAAGAGGGCAAGGCAGATGAATCGAGGAATCAGACGCTTCTTTTCCACTACGCTTACGATGTTATGCGAGGCCGATGGCAAAGATTGGAAAAGATCTTCAGCGGCTCCCAACGTTTCTCGCTTCAGAATTTGACTTCCAACTATTGCAGCTTTTTCCGGACGGTCACGGGGCCTTCGCCAGCGTACGCGTGGGTGAAATGCGAGAGAGAAGAAGACGAGGACTGCACAGCAGTGATGAAGAGTGGAGGGATTGTGGGGCGAAGAGGCGAAGAGTTTGAGGGAGAGAAACGGTATGTCCGATTGAGCTTAATCAGACGAGACGACAACTTCGCATTGTTAGAACGTCGCCTACAGGCGCTTCTTTCATATCGTAATTTTACTGTCAGCTCCACCACTTGAGCCGAGCCGAGCGAGAATTATGTGTTGCCCTTGGTTTGTTTAGGGTGTTGGTGGAGCTATAATCTTCAATGGAGATAGAGTGCCACCAGTGACCGCTGCTTCTTTTAACTCTGTCCTTGTGAAAGGAAAATTATAAAAAAAACTCTAGATGTAATAAAATTCTGAATAGTGTGCAACTTTTTTTATTGATTCGCTGAACTTTCAAGCGGGCCACTAATAGTGGGTGTACCAAGCAAGACAATGCAACTGAAATAGTGGTCCTCCCTACACTAAATGGGCCCGTGATGGGTGTAGCAGGGCAGATTAAAAAATGAAATGGTTGATCCTAAGTACATTATTTTTTGTGGTTTGCGTGCCATCCCATGCTGGATATACAGAAAGGAAAGTGGAATAAATACTGATGTAATTGCTGGGATGTATATATATATATAT

Ace file of the UniGene sp_v3.0_unigene2324

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO	-	-	0.0	52%
FL-Next	sp=Tryptophan aminotransferase-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	Alliinase	-	-	1.072e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alliin lyase.	EC:4.4.1.4	-	4.073e-40	-

Source	Gene names
Sma3	ALL1; AT4g24670; Alli; Alli-1A; At1g34040; At1g34060; F12G12.12; F12G12.14; F22K18.130; GSVIVT00008961001; GSVIVT00008962001; GSVIVT00008963001; GSVIVT00008967001; GSVIVT00008969001; GSVIVT00008972001; GSVIVT00016011001; M2D3.1; OJ1276_B06.34; Os01g016980

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	carbon-sulfur lyase activity	GO:0016846	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	alliin lyase activity	GO:0047654	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	EGF-like, alliinase	IPR006947	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34060.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein chr1:12396561-12398299 REVERSE LENGTH=463	45%
RefSeq	Arabidopsis thaliana	NP_564435.1	Pyridoxal phosphate-dependent transferase domain-containing protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002300900.1	predicted protein, partial [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q93Z38

Fln msg:

Fln protein: MFWPFPIHWSSHQVNHRDAGIEEGVTDNNSQALTWSRHAAEETEATAAYDCSGHGYLFVDTVNIGADDGGKTFNCECNDCYTGPDCSQMVADCAANVDSGDPLFLEPFWIRNAEASATVFPGWYRMSYKIQDSGAIQILSPELETQIRGIHALVGNAVTEGRYIVIGTGSKQLINAAVYSLSPRREDAQHPAHVVAVPPHYGTYRTQTQMFDSADYSWEGDARAWVKRSKSLNSTRFVEIVASPNNPSGSLQEGVLEGQNVRTVYDHAYYWPHFTAINEPVNEDVMLFTLSKLTGHAGSRLGWAIVKDFNVYQKMTEYVIGNTLGVSHDSQLRATTLLKTVTAGYQGKLKEGKADESRNQTLLFHYAYDVMRGRWQRLEKIFSGSQRFSLQNLTSNYCSFFRTVTGPSPAYAWVKCEREEDEDCTAVMKSGGIVGRRGEEFEGEKRYVRLSLIRRDDNFALLERRLQALLSYRNFTVSSTT*

Protein Length: 483

Fln nts: CTGGCCGCCCTCCATCTCCAGGTCGAAGGAATTTCTACACAGAGGAATTCCAAATCCAGGCAGAAGGAATCTCCGGCCAGAAGAGTTCTTTGATCCATGGTTCGCGGGACTGAAATCCTCAAGATGGATCATCAACAAAAGCAATTCTTGCTTGCTGAACATCGGATCGACAGACATTGCAATCGCCGAACAAAACCCGGACTGTCAAGCATGTTTTGTTGGTCTCGTCTCTTCTGTTGAACCTGCTACTTTCTATC_-_ATGTTTTGGCCATTCCCGATCCATTGGTCCTCGCACCAGGTAAATCATCGAGATGCAGGAATTGAAGAGGGCGTGACTGATAATAATTCGCAGGCGCTGACATGGAGTAGGCACGCCGCAGAGGAAACAGAGGCAACGGCAGCGTATGATTGTTCTGGTCATGGATATCTCTTCGTCGATACGGTAAATATTGGGGCAGATGATGGGGGAAAAACATTTAACTGCGAATGTAACGACTGCTACACAGGACCCGATTGTTCCCAAATGGTTGCTGATTGCGCAGCAAATGTCGACAGCGGGGATCCTCTGTTCCTAGAGCCCTTCTGGATCAGGAATGCGGAAGCCAGCGCAACAGTGTTCCCGGGGTGGTATCGGATGAGCTATAAAATACAAGACAGTGGAGCAATACAGATATTATCCCCCGAGTTAGAGACTCAAATTCGTGGTATTCATGCGTTGGTGGGAAACGCCGTGACAGAAGGGAGATATATAGTGATTGGAACCGGCTCTAAGCAGCTTATCAACGCTGCAGTTTACAGTCTTTCTCCTAGGCGTGAAGATGCTCAACATCCTGCCCACGTTGTCGCAGTTCCGCCCCATTACGGAACATACAGAACCCAGACTCAAATGTTTGACTCTGCCGACTATAGCTGGGAGGGAGACGCTAGGGCATGGGTAAAACGCTCCAAATCTCTGAACTCGACCAGATTTGTAGAGATTGTAGCGTCTCCAAACAATCCCAGCGGTTCTCTTCAAGAAGGCGTATTAGAGGGACAAAACGTGAGGACTGTTTATGATCATGCCTACTATTGGCCTCACTTCACTGCCATTAATGAACCAGTTAACGAGGACGTGATGCTCTTCACCCTGTCAAAGCTCACTGGACACGCAGGCAGCAGGCTAGGATGGGCTATTGTGAAAGACTTTAATGTGTATCAGAAGATGACTGAATATGTTATTGGGAACACCTTAGGGGTTTCACATGACAGCCAGCTAAGGGCGACTACGTTACTGAAAACAGTAACTGCTGGTTATCAAGGCAAATTGAAAGAGGGCAAGGCAGATGAATCGAGGAATCAGACGCTTCTTTTCCACTACGCTTACGATGTTATGCGAGGCCGATGGCAAAGATTGGAAAAGATCTTCAGCGGCTCCCAACGTTTCTCGCTTCAGAATTTGACTTCCAACTATTGCAGCTTTTTCCGGACGGTCACGGGGCCTTCGCCAGCGTACGCGTGGGTGAAATGCGAGAGAGAAGAAGACGAGGACTGCACAGCAGTGATGAAGAGTGGAGGGATTGTGGGGCGAAGAGGCGAAGAGTTTGAGGGAGAGAAACGGTATGTCCGATTGAGCTTAATCAGACGAGACGACAACTTCGCATTGTTAGAACGTCGCCTACAGGCGCTTCTTTCATATCGTAATTTTACTGTCAGCTCCACCACTTGA___GCCGAGCCGAGCGAGAATTATGTGTTGCCCTTGGTTTGTTTAGGGTGTTGGTGGAGCTATAATCTTCAATGGAGATAGAGTGCCACCAGTGACCGCTGCTTCTTTTAACTCTGTCCTTGTGAAAGGAAAATTATAAAAAAAACTCTAGATGTAATAAAATTCTGAATAGTGTGCAACTTTTTTTATTGATTCGCTGAACTTTCAAGCGGGCCACTAATAGTGGGTGTACCAAGCAAGACAATGCAACTGAAATAGTGGTCCTCCCTACACTAAATGGGCCCGTGATGGGTGTAGCAGGGCAGATTAAAAAATGAAATGGTTGATCCTAAGTACATTATTTTTTGTGGTTTGCGTGCCATCCCATGCTGGATATACAGAAAGGAAAGTGGAATAAATACTGATGTAATTGCTGGGATGTATATATATATATAT

Fln Alignment:

Contig2324___TWSRHXXXXXXXXXXYDCSGHGYLFVDTVNIGADDGGKTFNCECNDCYTGPDCSQMVADCAANVDSGDPLFLEPFWIRNAEASATVFPGWYRMSYKIQDSGAIQILSPELETQIRGIHALVGNAVTEGRYIVIGTGSKQLINAAVYSLSPRREDAQHPAHVVAVPPHYGTYRTQTQMFDSADYSWEGDARAWVKRSKSLNSTRFVEIVASPNNPSGSLQEGVLEGQNVRTVYDHAYYWPHFTAINEPVNEDVMLFTLSKLTGHAGSRLGWAIVKDFNVYQKMTEYVIGNTLGVSHDSQLRATTLLKTVTAGYQGKLKEGKADESRNQTLLFHYAYDVMRGRWQRLEKIFSGSQRFSLQNLTSNYCSFFRTVTGPSPAYAWVKCEREEDEDCTAVMKSXXXXXXXXXXXXXXXXYVRLSLIRRDDNFALLERRLQALLSYRNFTVSSTT*AEPSENYV
Q93Z38______________TWTNRAAAEAETVASFSCSGHGRAFVD--GLGVLDGQKP-PCECNNCYIGKDCSVLLKDCPVDANSGDPLFLEPFWMRQAERSAILVSGWHRMSYIYEDGTYV---SRELEKVIRKLHSVVGNAVTDNRFVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSAHLKFEGNASAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNVKTLHDYAYYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHVLQLLKVVVG------------DGGNE--IFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFKKVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQLIAMLKKLVYHEEDV--------PSENFM

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
747	66		33		1.0
807	83			16	0.994512
933	11		88		0.923564
934		11		88	0.923564
936	88			11	0.923564
937	88			11	0.923564
1264	14	85			0.993533
1282		66		33	1.0
1431	25			75	0.996473
1466			25	75	0.996473
1481	25		75		0.996473
1483	25	75			0.996473
1484	75			25	0.996473
1485			75	25	0.996473
1494			33	66	0.997452
1709		16	83		0.994512
1762	80		20		0.995493
1833	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2121	2135	TA TA TA TA TA TA TA T	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain