SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2322

Length: 1952 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2322
CAAATTTAGGACGTAAAATAATGTATTCAACTTCGCATTTCTTCTTCTAACGACCAGCGGTTTTCTCCCTTGAAGTGAGGCTTCGTGTCATTTAATAAGTAGGTAGGGTTTTTCAGAAGTGGGGTTCATCGCATTTTCCAGTACTTGTAATGGTACAGCAGAGAGAAGGGGTTGAGAGGTACAATATTGAAAATGGCGGATCGTGATTATGCGAGGGCAATATTGGTCAAATTGAATTGACTGGATCTCATGGTTAGAGAGCTTAGTGGGATCGAGAAGCTACAGAGACAATATACAGGAGGGGTCTCTCGTTCATCACTCTAGACAGTGTGTAACTGCACTTCAACAAATATATTTTAGAAAGAATCTCTGCTATTTATGGAGATGGACGAGATTCAGGAACAGTCCCAACCCCAATCCAGTGAGAAGCAGGATATTTCTCAAGAATATGACACAGGCAATGATAAAACAATTAATGCTGAAAATATCACATCCGAGAATGCTGAAGTTGAAGAAGATGATATGCTTCCTCCAAAAGTTAATACTGAAGTGGAAGTTCTTCATGATAAAGTTACAAAACAAATCATCAAGGAAGGGAGTGGAAACAAGCCTTCACGGAATTCGACATGCTTCTTGCACTACAGAGCGTGGGCTGAAAGCACTATGCACAAGTTTCAAGACACCTGGCAAGAACAACAGCCACTCGAACTGGTTTTGGGCAGAGAGAAAAAAGAATTGAGTGGCTTTGCCATTGGTGTGGCTGGCATGAAAGCTGGTGAACGTGCCTTGCTTCATGTGGACTGGCAATTAGGTTATGGGGAAGAAGGGAACTTCTCTTTTCCAAATGTACCACCTAGAGCCAATCTTATATATGAAGCTGAGCTTATTGGTTTTGAGGAAGCCAAGGAAGGTAAGGCACGTAGTGATATGACAGTAGAGGAGCGAATTGAAGCAGCAGATAGGAGACGGCAGCAAGGTAATGGACTTTTCAAGGAGGACAAATTAGCAGAGGCTATGCAACAGTATGAAATGGCCCTAGCATACATGGGAGATGATTTTATGTTTCAGTTGTTTGGAAAATACAAGGATATGGCAACTGCTGTGAAGAACCCTTGCCATCTTAATATGGCTCAATGTTTGTTGAAGCTGAACCGTTATGAAGAAGCCATTGGCCAGTGTAACATGGTATTAGCTGAGGATGAGAAGAATATCAAGGCTTTATTCAGACGTGGTAAGGCAAGAGCTACTCTAGGGCAGACTGATGATGCAAGAGAGGACTTTCAGAAGGTTCGGAAATTTTCTCCTGAAGATAAGGCAGTGATACGAGAGTTGCGTCTCCTTGCTGAACATGATAAGCAGGTTTATCAGAAACAGAAGGAGATGTTCAAGGGTCTTTTTGGGCAAAAACCAGAACAGAAACCAAAGAAGTTACACTGGTTTGTTGTGTTTTGGCAGTGGCTTCTGTCGATGATAAGAACTATTTTTAGGATGAGATCCAAAACTGACTAATTAATTACGGTTCAATTTGTCGATCTTGTTAATATAACTTAATTTTTCTGTTGCCAATAAGAGCTATGCAACAATGCTATTCGACTTGGAAGTTGTGAAGTGGATCACTACTGGATTCCGTTACATTAGTTATTGCAAGTTGGTCATTATGTACGTCTATATCACAGAACTTTGACAATTGTCTGTGAACTACAGTATTAAATAATTTTGGTGCTTGTTACTCTTAATTTGTGATCCACCTTTAAAATTTTCTTTTTCGTAGACCCAGTTTAGGTTTGTGTTCATTTAATTGAGTGGGGAAATTGGACATGGATTCGATTTACAGCCCCACAATAAGTATAGAGTTTTGTAAAATAGTAATGTTCCAAATGTTGGGCATGTTTCTAACAAGAACAGAAGATTTTGTCTTAGCCATCATTTTGAGGTGATATTTCCATCATCTA

Ace file of the UniGene sp_v3.0_unigene2322 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptidyl-prolyl isomerase [Arabidopsis thaliana] sp\|Q9LDC0.1\|FKB42_ARATH RecName: Full=42 kDa peptidyl-prolyl isomerase; AltName: Full=Peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Protein TWISTED DWARF 1; AltName: Full=Protein ULTRACUR	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	At3g21640; FKBP42; GSVIVT00028766001; LOC_Os11g05090; LOC_Os12g05090; MIL23.21; MalusFKBP-like2.080; Os11g0148300; Os12g0145500; OsI_35103; OsI_37454; OsJ_32967; OsJ_35207; PHYPADRAFT_226494; POPTRDRAFT_722820; POPTRDRAFT_815400; RCOM_0967480; TWD1; UCU2;

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21640.1	TWD1, UCU2, FKBP42, ATFKBP42 FKBP-type peptidyl-prolyl cis-trans isomerase family protein chr3:7619025-7621097 REVERSE LENGTH=365	65%
RefSeq	Arabidopsis thaliana	NP_188801.2	peptidyl-prolyl isomerase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002313312.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACH2

Fln msg:

Fln protein: MEMDEIQEQSQPQSSEKQDISQEYDTGNDKTINAENITSENAEVEEDDMLPPKVNTEVEVLHDKVTKQIIKEGSGNKPSRNSTCFLHYRAWAESTMHKFQDTWQEQQPLELVLGREKKELSGFAIGVAGMKAGERALLHVDWQLGYGEEGNFSFPNVPPRANLIYEAELIGFEEAKEGKARSDMTVEERIEAADRRRQQGNGLFKEDKLAEAMQQYEMALAYMGDDFMFQLFGKYKDMATAVKNPCHLNMAQCLLKLNRYEEAIGQCNMVLAEDEKNIKALFRRGKARATLGQTDDAREDFQKVRKFSPEDKAVIRELRLLAEHDKQVYQKQKEMFKGLFGQKPEQKPKKLHWFVVFWQWLLSMIRTIFRMRSKTD*

Protein Length: 378

Fln nts: CAAATTTAGGACGTAAAATAATGTATTCAACTTCGCATTTCTTCTTCTAACGACCAGCGGTTTTCTCCCTTGAAGTGAGGCTTCGTGTCATTTAATAAGTAGGTAGGGTTTTTCAGAAGTGGGGTTCATCGCATTTTCCAGTACTTGTAATGGTACAGCAGAGAGAAGGGGTTGAGAGGTACAATATTGAAAATGGCGGATCGTGATTATGCGAGGGCAATATTGGTCAAATTGAATTGACTGGATCTCATGGTTAGAGAGCTTAGTGGGATCGAGAAGCTACAGAGACAATATACAGGAGGGGTCTCTCGTTCATCACTCTAGACAGTGTGTAACTGCACTTCAACAAATATATTTTAGAAAGAATCTCTGCTATTT_-_ATGGAGATGGACGAGATTCAGGAACAGTCCCAACCCCAATCCAGTGAGAAGCAGGATATTTCTCAAGAATATGACACAGGCAATGATAAAACAATTAATGCTGAAAATATCACATCCGAGAATGCTGAAGTTGAAGAAGATGATATGCTTCCTCCAAAAGTTAATACTGAAGTGGAAGTTCTTCATGATAAAGTTACAAAACAAATCATCAAGGAAGGGAGTGGAAACAAGCCTTCACGGAATTCGACATGCTTCTTGCACTACAGAGCGTGGGCTGAAAGCACTATGCACAAGTTTCAAGACACCTGGCAAGAACAACAGCCACTCGAACTGGTTTTGGGCAGAGAGAAAAAAGAATTGAGTGGCTTTGCCATTGGTGTGGCTGGCATGAAAGCTGGTGAACGTGCCTTGCTTCATGTGGACTGGCAATTAGGTTATGGGGAAGAAGGGAACTTCTCTTTTCCAAATGTACCACCTAGAGCCAATCTTATATATGAAGCTGAGCTTATTGGTTTTGAGGAAGCCAAGGAAGGTAAGGCACGTAGTGATATGACAGTAGAGGAGCGAATTGAAGCAGCAGATAGGAGACGGCAGCAAGGTAATGGACTTTTCAAGGAGGACAAATTAGCAGAGGCTATGCAACAGTATGAAATGGCCCTAGCATACATGGGAGATGATTTTATGTTTCAGTTGTTTGGAAAATACAAGGATATGGCAACTGCTGTGAAGAACCCTTGCCATCTTAATATGGCTCAATGTTTGTTGAAGCTGAACCGTTATGAAGAAGCCATTGGCCAGTGTAACATGGTATTAGCTGAGGATGAGAAGAATATCAAGGCTTTATTCAGACGTGGTAAGGCAAGAGCTACTCTAGGGCAGACTGATGATGCAAGAGAGGACTTTCAGAAGGTTCGGAAATTTTCTCCTGAAGATAAGGCAGTGATACGAGAGTTGCGTCTCCTTGCTGAACATGATAAGCAGGTTTATCAGAAACAGAAGGAGATGTTCAAGGGTCTTTTTGGGCAAAAACCAGAACAGAAACCAAAGAAGTTACACTGGTTTGTTGTGTTTTGGCAGTGGCTTCTGTCGATGATAAGAACTATTTTTAGGATGAGATCCAAAACTGACTAA___TTAATTACGGTTCAATTTGTCGATCTTGTTAATATAACTTAATTTTTCTGTTGCCAATAAGAGCTATGCAACAATGCTATTCGACTTGGAAGTTGTGAAGTGGATCACTACTGGATTCCGTTACATTAGTTATTGCAAGTTGGTCATTATGTACGTCTATATCACAGAACTTTGACAATTGTCTGTGAACTACAGTATTAAATAATTTTGGTGCTTGTTACTCTTAATTTGTGATCCACCTTTAAAATTTTCTTTTTCGTAGACCCAGTTTAGGTTTGTGTTCATTTAATTGAGTGGGGAAATTGGACATGGATTCGATTTACAGCCCCACAATAAGTATAGAGTTTTGTAAAATAGTAATGTTCCAAATGTTGGGCATGTTTCTAACAAGAACAGAAGATTTTGTCTTAGCCATCATTTTGAGGTGATATTTCCATCATCTA

Fln Alignment:

Contig2322___DISQEYDTGNDKTINAENITSENAEVEEDDMLPPKVNTEVEVLHDKVTKQIIKEGSGNKPSRNSTCFLHYRAWAESTMHKFQDTWQEQQPLELVLGREKKELSGFAIGVAGMKAGERALLHVDWQLGYGEEGNFSFPNVPPRANLIYEAELIGFEEAKEGKARSDMTVEERIEAADRRRQQGNGLFKEDKLAEAMQQYEMALAYMGDDFMFQLFGKYKDMATAVKNPCHLNMAQCLLKLNRYEEAIGQCNMVLAEDEKNIKALFRRGKARATLGQTDDAREDFQKVRKFSPEDKAVIRELRLLAEHDKQVYQKQKEMFKGLFGQKPEQKPKKLHWFVVFWQWLLSMIRTIFRMRSKTD
D5ACH2______________EITQESDPDNDKTINGEKITSENAEVEEDDMLPPKVNSEVEVLHHKVTKQIIKAGNGNKPSQNSTCFLHYRAWAESTMHKFEDTWQEQQPLELVLGREKKELSGFAIGVASMKAGERALLHVDWQLGYGEEGNFSFPNVPPRANLIYEAELIGFEEAKEGKARSDMTVEERIEAADRRRQEGNELFKEDKLAEAMQQYEMALAYMGDDFMFQLFGKYRDMATAVKNPCHLNMAACLLKLNRYEEAIGHCNMVLAEDEKNIKALFRRGKARAALGQTDDAREDFQKVRKISPEDKAVIRELRLLAEHDKQVYKKQKEMYKGLFGQKPEHKPKRLHWFIVFWQWLLSIIRTIFRLRSKTD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1194			88	11	0.923564
1195		88	11		0.923564
1196		88		11	0.923564
1264		87		12	0.992554
1267			87	12	0.992554
1649		38	61		1.0
1780		30		70	1.0
1908	66	33			1.0
1909		33	66		1.0
1910	66	33			1.0
1912			50	50	1.0
1913	75		25		0.996473
1917	75		25		0.996473
1919	75	25			0.996473
1920	25			75	0.996473
1923		25	75		0.996473
1927			33	66	0.997452
1929		33	66		0.997452
1931	66	33			0.997452
1932			33	66	0.997452
1935	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain