SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2321

Length: 2222 nt

UniGene Fasta

>sp_v3.0_unigene2321
AGAAAGGTTATTGAAACGTTTGCAATTCGATCTCCAGCTTAGAAAGGTTATCGAAACGTTTGCAATTCAATCCCCAGCTTCTCCGCTTCTGCAGAATTCATTGACAAGAAGGACTAAGGATATTGCTCCCATCTCTTTGGCTTCTGCTGAATTTGAATCCAAATGACATTAGGACATCCATTTACAGAACTATTACAGAACACAGGTATAACCATCTCTTGATCTTTTTCTTCCTCTAGAAAGAGGGGAAGAGAAAATGGCAGGGAGTGGAGGATCCAGATCAGCGAGGAGATGGACTAGATGGTTACTGTTTTTGGTATTGGCAGCGGGGTTTTGGAGAATTCTCTTTCTCGGTAATCTGGACCTCGGGAAGCAATCCTCAATTTTAACTACCTGGAAAGCAAATTTCTATGAACGGAGGCAACCCTCTGGAAAAACCAATAGTTCGGGCCGTGCCGGTCTTTATTTTGCTCCATTGAATAGTTCTGCTGCCATGGATGATCCTCTAACTAAGGTCGCAGGTCACCCGGTTGATGACATATGCGAAGCGTGGCTGGAGAAAGAGGACCGTTTCACCTATTCTCGCAATTTTAGCACAGACCCAATCTGGGTTGTTGGAGAGGAGAAGGACTGGAGCACATGTTCCGTGGAGTGTGTCTTTAGAAGCTCACTTACTTCTGAAAGGAAACCGGATGCTGGATTTGGGTTTCGCGGTGATGGCGAAACTGCAAGTGTTCTACGGTCCATGGAATCATCACATTACTATCCTGAGAACCATATAGCTGTTGCACGAGGGAAAGGGTACAATGTTATAATGACAACCAGTCTCTCGTCAGATGTACCTGTAGGTTATTTTTCATGGGCTGAATATGATATTATGGCACCTATTCAGCCAAAGACTGAAAAGGCCCTTGCAGCTGCTTTCATTTCCAATTGTGGAGCTCATAACTTTCGTCTACAGGCACTTGAACAGCTTCAGAAGCTCAATGTCCCAGTTGATTCTTATGGTGGTTGTCATCGAAATCGAGATGGCAGGGTGAACAAAGTAGAGGCTCTGAAGCGTTATAAATTCAGCCTAGCCTTTGAAAATTCTAATGAAGAGGACTATGTCACGGAGAAATTCTTCCAGTCCCTAGTTGCAGGTGCAATCCCTGTGGTGGTAGGAGCTCCCAATATTCAAGACTATGCACCTGCTCCAAATGCAATTATACATATTAAGACCATAGCTGAAATTAGTTTGGCGGCTCAGACTATCAAGTACCTTGCTTCAAATACTACTGCTTATAATGAGAGATTAAGGTGGAAATTTGAGGGCCCTTCTGATTCATTCAAGGCCCTTGTTGATATGGCAGCAGTACACTCTTCTTGCCGCCTTTGCATTCATCTGGCAACACAAATCCAAGAAAAGGAAGAGAAAGCCAAGGATATCAGTAAACACCGCCCATGCAAATGCGAGAAAGGTTCAGAGACATTATACCATCTATATGTAAGAGAGCGGGGAAGATTTGAAATGCAATCAGTCTTTATAAGGTCTCAGAACCTCACACTAAAGGGTCTTGAGCTAGCGGTCCTTTCTAAGTTCAGATCTCTGAAGCACATACCCATTTGGAAGACTGAACGGCCTGAAGTGATTCGTGGAAATAATAAGTTGAAGATTTATAGAATATACCCTGTTGGTCTAACTCAGCGACAAGCATTATATACATGGAAGTTTCATAATGATGAAGATTTTAAAAGCTTTGTACAGAAAAATCCTTGTGCTAAAATTGAAGTCATTTTTGTGTAAGCCTGGATAACAGATCAAATATGTCCAGTTAGCTGTTTCAAATCCAAGTTAAGCAGAAGCCAGGAAGGTTTTATTGCAACTAACACCTGATTCTGCATCCGATTGTCATAAAAATATAGTGGCAGGGAAATTTTGCAGAGATAACCCTTGATCTTGATGCCTTCTTCTCGAAGATATTCTCGAGAGGTCTTCCTGTGAGGAAAATCTTTATATTACATCACTGTAATGAAGAGATATCTGGGTAGACTTTATCCAGATATCGTTATATATCACATTTAAATCTTTATCCTTTCAGATATTATTTCATTGATCAATTTGAAATATACATTGTTGTCTCAAGCAGAAAGATGGCCTAGAGTACAGAGCTATTAAGTCTGCTTAGTGTTTCAGCAACAGGCTTATGGCTTGATTTATTGCTTTGGTTATTTTTTTTTTT

Ace file of the UniGene sp_v3.0_unigene2321

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha 1,3 fucosyltransferase [Populus tremula x Populus alba]	-	-	0.0	61%
FL-Next	sp=Glycoprotein 3-alpha-L-fucosyltransferase A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Sma3	Core alpha 1,3-fucosyltransferase	-	-	8.065e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glycoprotein 3-alpha-L-fucosyltransferase.	EC:2.4.1.214	-	1.736e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Various types of N-glycan biosynthesis	00513		1.736e-23	%

Source	Gene names
Sma3	At1g49710; At3g19280; F14J22.8; F14J22_18; FUT11; FUT12; FUT2; Fuct1; GSVIVT00036601001; MVI11.20; Os08g0472600; OsI_29567; OsJ_27645; P0013B04.16; PHYPADRAFT_206064; POPTRDRAFT_1087083; POPTRDRAFT_574355; RCOM_0813330; core3ft; fuct; fuct3; poFUT2;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	fucosyltransferase activity	GO:0008417	Molecular Function	-
Sma3	glycoprotein 3-alpha-L-fucosyltransferase activity	GO:0018392	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-
Sma3	protein N-linked glycosylation	GO:0006487	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	L-fucose catabolic process	GO:0042355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 10	IPR001503	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19280.1	FUT11, ATFUT11, FUCT1, FUCTA fucosyltransferase 11 chr3:6681409-6683801 REVERSE LENGTH=501	65%
RefSeq	Arabidopsis thaliana	NP_188559.1	glycoprotein 3-alpha-L-fucosyltransferase A [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002313854.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LJK1

Fln msg:

Fln protein: MAGSGGSRSARRWTRWLLFLVLAAGFWRILFLGNLDLGKQSSILTTWKANFYERRQPSGKTNSSGRAGLYFAPLNSSAAMDDPLTKVAGHPVDDICEAWLEKEDRFTYSRNFSTDPIWVVGEEKDWSTCSVECVFRSSLTSERKPDAGFGFRGDGETASVLRSMESSHYYPENHIAVARGKGYNVIMTTSLSSDVPVGYFSWAEYDIMAPIQPKTEKALAAAFISNCGAHNFRLQALEQLQKLNVPVDSYGGCHRNRDGRVNKVEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGAIPVVVGAPNIQDYAPAPNAIIHIKTIAEISLAAQTIKYLASNTTAYNERLRWKFEGPSDSFKALVDMAAVHSSCRLCIHLATQIQEKEEKAKDISKHRPCKCEKGSETLYHLYVRERGRFEMQSVFIRSQNLTLKGLELAVLSKFRSLKHIPIWKTERPEVIRGNNKLKIYRIYPVGLTQRQALYTWKFHNDEDFKSFVQKNPCAKIEVIFV*

Protein Length: 511

Fln nts: AGAAAGGTTATTGAAACGTTTGCAATTCGATCTCCAGCTTAGAAAGGTTATCGAAACGTTTGCAATTCAATCCCCAGCTTCTCCGCTTCTGCAGAATTCATTGACAAGAAGGACTAAGGATATTGCTCCCATCTCTTTGGCTTCTGCTGAATTTGAATCCAAATGACATTAGGACATCCATTTACAGAACTATTACAGAACACAGGTATAACCATCTCTTGATCTTTTTCTTCCTCTAGAAAGAGGGGAAGAGAAA_-_ATGGCAGGGAGTGGAGGATCCAGATCAGCGAGGAGATGGACTAGATGGTTACTGTTTTTGGTATTGGCAGCGGGGTTTTGGAGAATTCTCTTTCTCGGTAATCTGGACCTCGGGAAGCAATCCTCAATTTTAACTACCTGGAAAGCAAATTTCTATGAACGGAGGCAACCCTCTGGAAAAACCAATAGTTCGGGCCGTGCCGGTCTTTATTTTGCTCCATTGAATAGTTCTGCTGCCATGGATGATCCTCTAACTAAGGTCGCAGGTCACCCGGTTGATGACATATGCGAAGCGTGGCTGGAGAAAGAGGACCGTTTCACCTATTCTCGCAATTTTAGCACAGACCCAATCTGGGTTGTTGGAGAGGAGAAGGACTGGAGCACATGTTCCGTGGAGTGTGTCTTTAGAAGCTCACTTACTTCTGAAAGGAAACCGGATGCTGGATTTGGGTTTCGCGGTGATGGCGAAACTGCAAGTGTTCTACGGTCCATGGAATCATCACATTACTATCCTGAGAACCATATAGCTGTTGCACGAGGGAAAGGGTACAATGTTATAATGACAACCAGTCTCTCGTCAGATGTACCTGTAGGTTATTTTTCATGGGCTGAATATGATATTATGGCACCTATTCAGCCAAAGACTGAAAAGGCCCTTGCAGCTGCTTTCATTTCCAATTGTGGAGCTCATAACTTTCGTCTACAGGCACTTGAACAGCTTCAGAAGCTCAATGTCCCAGTTGATTCTTATGGTGGTTGTCATCGAAATCGAGATGGCAGGGTGAACAAAGTAGAGGCTCTGAAGCGTTATAAATTCAGCCTAGCCTTTGAAAATTCTAATGAAGAGGACTATGTCACGGAGAAATTCTTCCAGTCCCTAGTTGCAGGTGCAATCCCTGTGGTGGTAGGAGCTCCCAATATTCAAGACTATGCACCTGCTCCAAATGCAATTATACATATTAAGACCATAGCTGAAATTAGTTTGGCGGCTCAGACTATCAAGTACCTTGCTTCAAATACTACTGCTTATAATGAGAGATTAAGGTGGAAATTTGAGGGCCCTTCTGATTCATTCAAGGCCCTTGTTGATATGGCAGCAGTACACTCTTCTTGCCGCCTTTGCATTCATCTGGCAACACAAATCCAAGAAAAGGAAGAGAAAGCCAAGGATATCAGTAAACACCGCCCATGCAAATGCGAGAAAGGTTCAGAGACATTATACCATCTATATGTAAGAGAGCGGGGAAGATTTGAAATGCAATCAGTCTTTATAAGGTCTCAGAACCTCACACTAAAGGGTCTTGAGCTAGCGGTCCTTTCTAAGTTCAGATCTCTGAAGCACATACCCATTTGGAAGACTGAACGGCCTGAAGTGATTCGTGGAAATAATAAGTTGAAGATTTATAGAATATACCCTGTTGGTCTAACTCAGCGACAAGCATTATATACATGGAAGTTTCATAATGATGAAGATTTTAAAAGCTTTGTACAGAAAAATCCTTGTGCTAAAATTGAAGTCATTTTTGTGTAA___GCCTGGATAACAGATCAAATATGTCCAGTTAGCTGTTTCAAATCCAAGTTAAGCAGAAGCCAGGAAGGTTTTATTGCAACTAACACCTGATTCTGCATCCGATTGTCATAAAAATATAGTGGCAGGGAAATTTTGCAGAGATAACCCTTGATCTTGATGCCTTCTTCTCGAAGATATTCTCGAGAGGTCTTCCTGTGAGGAAAATCTTTATATTACATCACTGTAATGAAGAGATATCTGGGTAGACTTTATCCAGATATCGTTATATATCACATTTAAATCTTTATCCTTTCAGATATTATTTCATTGATCAATTTGAAATATACATTGTTGTCTCAAGCAGAAAGATGGCCTAGAGTACAGAGCTATTAAGTCTGCTTAGTGTTTCAGCAACAGGCTTATGGCTTGATTTATTGCTTTGGTTATTTTTTTTTTT

Fln Alignment:

Contig2321___CEAWLEKEDRFTYSRNFSTDPIWVVGEEKDWSTCSVECVFRSSLTSERKPDAGFGFRGDGETASVLRSMESSHYYPENHIAVARGKGYNVIMTTSLSSDVPVGYFSWAEYDIMAPIQPKTEKALAAAFISNCGAHNFRLQALEQLQKLNVPVDSYGGCHRNRDGRVNKVEALKRYKFSLAFENSNEEDYVTEKFFQSLXXXXXXXXXXXXNIQDYAPAPNAIIHIKTIAEISLAAQTIKYLASNTTAYNERLRWKFEGPSDSFKALVDMAAVHSSCRLCIHLATQIQEKEEKAKDISKHRPCKCEKGSETLYHLYVRERGRFEMQSVFIRSQNLTLKGLELAVLSKFRSLKHIPIWKTERPEVIRGNNKLKIYRIYPVGLTQRQALYTWKFHNDEDFKSFVQKNPCAKIEVIFV
Q9LJK1______________CQEWLERVDSVTYSRDFTKDPIFISGSNKDFKSCSVDCVM--GFTSDKKPDAAFGLSHQPGTLSIIRSMESAQYYQENNLAQARRKGYDIVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVKIDSYGGCHRNRDGSVEKVEALKHYKFSLAFENTNEEDYVTEKFFQSLVAGSVPVVVGAPNIEEFAPSPDSFLHIKQMDDVKAVAKKMKYLADNPDAYNQTLRWKHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEF-KRRPCKCTRGSETVYHLYVRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGIYPIGLTQRQALYNFKFEGNSSLSTHIQRNPCPKFEVVFV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
529	80		20		0.995493
565	80		20		0.995493
1568	14		85		0.993533
1569	14			85	0.993533
1570		85		14	0.993533
1571		85	14		0.993533
1594		12	87		0.992554
1595		87	12		0.992554
1596	87		12		0.992554
1597		87	12		0.992554
1778	14			85	0.993533
1779		14		85	0.993533
1780	14			85	0.993533
1781			85	14	0.993533
1948			75	12	0.975346
1949		87		12	0.992554
1950		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain