SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2312

Length: 1967 nt

UniGene Fasta

>sp_v3.0_unigene2312
GGGACACAGAGGTGTTAAAGTATTCCTCCTTACGGTAACCGTGACCGTGCTTACACGCCTTACCGTTAAATCGCCGTGGTCTGACAACAATGCAAACATTTAAACCCTATTTTAAATCTAGGATCCTATATTCATTCCAGTAGACTCCACTGCATGGGTTGGGTTCTTTGCATACACAGGCTTTCAATTCCTTAGTCATCCATGCCCATGGCCGCAGCGCAGAACCTGGTGATGCATGGATTGAAGCAACACAATTCACAAATCGGCCAGGGCTTTATCCACAACTTGCCTTCGAGTAGATCCCGTTGGTCTCCCGAGTTGTGTAGAAATCGCAGCTTGACAAGAGTATCGGTCAGGTGCAGCAGTGACAAGGAACTTAAGCTTACAATGGCTGCCATTGTTAACAATGACACAGATTGCGTTGCAGAGGATTCGTCCGCTGCTTTGTGTGAAAATGTGCATACAGGTGTCCAAGAAAAAGAGTTGAGTGTTTCTACAATTCTTGTGAACTTCAGCAATTCTTTTGACCCATATGGGGCTCTAAGCACACCTCTCTACCAGACTGCAACTTTCAAGCAGCCTTCTGCCACAGAGAATGGTCCATATGATTATACTAGAAGTGGAAATCCTACTCGGGATTCATTGGAAGCTCTGCTAGCGAAGTTAGAGGGTGCTGATCGAGCATTTTGTTTCACAAGTGGGATGGCTGCTTTGTCTGCCGTTACACATCTTGTAGAAGCAGGACAGGAAATTGTTGCTGGAGATGACATATATGGAGGATCTGATAGATTGCTTTCCAGAGTAGTCCCAAAAGATGGGATCATAGTGAAACGTGTAGACACAACTAATGTTGAAGAAGTGGCTGCCGCTGTTGGTCCATTGACAAAGGTCGTGTGGCTAGAGAGTCCAACTAATCCACGTCAGAAAATATCTGATATACGGAAAATTTCGGAAATAGCACATGCACATGGTGCACTGGTACTTGTTGACAACAGTATCATGTCTCCTGTACTATCAAGACCATTGGAGCTTGGAGCAGATATTGTGATGCATTCAGCAACTAAATTCATAGCTGGACATAGTGATGTCATGGCAGGTGTTCTTGCTGTAAAGGGGAAAAGTTTGGCCAAAGATATCTATTTCCTGCAGAATGCAGAAGGTTCAGGTCTGGCTCCATTTGACTGTTGGCTATGCTTGCGAGGGATCAAAACAATGGCTTTGCGCATTGAGAAACAACAGGAGAATGCAAGGAAAATTGCAGAATTTTTGTCATCTCATCCTCTGATTGAGAAAGTATATTATGCTGGCCTTCCTAGCCACCCAGGCCACTATTTACATTTTTTGCAGTCAAAAGGAGGAGGTTCAGTTCTTAGCTTTCAAACTGGCTCTTTGGCTCTTTCAAAGCACATCGTCGAAAACACAAGACTTTTCAGCATAACTGTTAGTTTTGGTAGTGTGAAGTCACTCATCAGTCTTCCATGTTTCATGTCACATGCAAGTATACCCTCTGAAGTACGAAAGTCCCGGGGATTAAGTGAAGATTTAATTCGCCTTTCTGTCGGGATTGAGGATGCAGAAGACCTGATTGTTGATTTAGACCAAGCAATTAAATCTGCATCTGTCTAATGTCAGCTGATTGATACTTTGGAAACAGGTTATGTGAGTTCATGAAATCAAGTAAAATCTGAAATCGACATTTGTTGAGTTCATGGGGTTGTATGTGCACAATATAAGGTTTTGGGATCTAAGAAACTGGAGATCTTGCTTTGTATGATCAACTTAGCTCCAACAACTTGCATCTGGTGAATTACAGAGTTAACAGTCTTTTTGTGGATGCTGCGTATTAGGAAGTGAAAAGTAGATCTTTTTTTTTTGAAATAATTAATATATACTAAAATAATCAGAATGTTGTTTATTGGGGCAGTTTCTTCTCCTACCTAGAAAAATGATCTGGTTTGGCAAATATA

Ace file of the UniGene sp_v3.0_unigene2312

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cystathionine beta-lyase, putative n=1 Tax=Ricinus communis RepID=B9RGV9_RICCO	-	-	0.0	71%
FL-Next	tr=Cystathionine beta-lyase, putative; Ricinus communis (Castor bean).	-	-	0.0	71%
Sma3	Cystathionine beta-lyase	-	-	6.097e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cystathionine beta-lyase.	EC:4.4.1.8	-	2.169e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Cysteine and methionine metabolism	00270	2.169e-08	%
Sma3	Selenocompound metabolism	00450	2.169e-08	%
Sma3	Nitrogen metabolism	00910	2.169e-08	%
Sma3	Sulfur metabolism	00920	2.169e-08	%
Sma3	Biosynthesis of plant hormones	01070	2.169e-08	%
Sma3	Metabolic pathways	01100	2.169e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	2.169e-08	%

Source	Gene names
Sma3	AT3G57050; At3g57050; CBL1; CHLREDRAFT_196483; CbL; F24I3.130; GSVIVT00000669001; METC; MICPUCDRAFT_2994; MICPUN_96733; OSTLU_88245; Os06g0175800; OsI_21880; OsJ_20318; Ot09g02610; P0015E04.18; P0015E04.31; PHATRDRAFT_15917; PHYPADRAFT_229194; RCOM_144474

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	cystathionine beta-lyase activity	GO:0004121	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	L-methionine biosynthetic process from L-homoserine via cystathionine	GO:0019279	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	-
Sma3	Cystathionine beta-lyase, eukaryotic	IPR006238	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57050.1	CBL cystathionine beta-lyase chr3:21111939-21114521 REVERSE LENGTH=464	0.0	73%
RefSeq	Arabidopsis thaliana	NP_191264.1	cystathionine beta-lyase [Arabidopsis thaliana]	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RGV9

Fln msg:

Fln protein: MPMAAAQNLVMHGLKQHNSQIGQGFIHNLPSSRSRWSPELCRNRSLTRVSVRCSSDKELKLTMAAIVNNDTDCVAEDSSAALCENVHTGVQEKELSVSTILVNFSNSFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDSLEALLAKLEGADRAFCFTSGMAALSAVTHLVEAGQEIVAGDDIYGGSDRLLSRVVPKDGIIVKRVDTTNVEEVAAAVGPLTKVVWLESPTNPRQKISDIRKISEIAHAHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGKSLAKDIYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAEFLSSHPLIEKVYYAGLPSHPGHYLHFLQSKGGGSVLSFQTGSLALSKHIVENTRLFSITVSFGSVKSLISLPCFMSHASIPSEVRKSRGLSEDLIRLSVGIEDAEDLIVDLDQAIKSASV*

Protein Length: 476

Fln nts: GGGACACAGAGGTGTTAAAGTATTCCTCCTTACGGTAACCGTGACCGTGCTTACACGCCTTACCGTTAAATCGCCGTGGTCTGACAACAATGCAAACATTTAAACCCTATTTTAAATCTAGGATCCTATATTCATTCCAGTAGACTCCACTGCATGGGTTGGGTTCTTTGCATACACAGGCTTTCAATTCCTTAGTCATCC_-_ATGCCCATGGCCGCAGCGCAGAACCTGGTGATGCATGGATTGAAGCAACACAATTCACAAATCGGCCAGGGCTTTATCCACAACTTGCCTTCGAGTAGATCCCGTTGGTCTCCCGAGTTGTGTAGAAATCGCAGCTTGACAAGAGTATCGGTCAGGTGCAGCAGTGACAAGGAACTTAAGCTTACAATGGCTGCCATTGTTAACAATGACACAGATTGCGTTGCAGAGGATTCGTCCGCTGCTTTGTGTGAAAATGTGCATACAGGTGTCCAAGAAAAAGAGTTGAGTGTTTCTACAATTCTTGTGAACTTCAGCAATTCTTTTGACCCATATGGGGCTCTAAGCACACCTCTCTACCAGACTGCAACTTTCAAGCAGCCTTCTGCCACAGAGAATGGTCCATATGATTATACTAGAAGTGGAAATCCTACTCGGGATTCATTGGAAGCTCTGCTAGCGAAGTTAGAGGGTGCTGATCGAGCATTTTGTTTCACAAGTGGGATGGCTGCTTTGTCTGCCGTTACACATCTTGTAGAAGCAGGACAGGAAATTGTTGCTGGAGATGACATATATGGAGGATCTGATAGATTGCTTTCCAGAGTAGTCCCAAAAGATGGGATCATAGTGAAACGTGTAGACACAACTAATGTTGAAGAAGTGGCTGCCGCTGTTGGTCCATTGACAAAGGTCGTGTGGCTAGAGAGTCCAACTAATCCACGTCAGAAAATATCTGATATACGGAAAATTTCGGAAATAGCACATGCACATGGTGCACTGGTACTTGTTGACAACAGTATCATGTCTCCTGTACTATCAAGACCATTGGAGCTTGGAGCAGATATTGTGATGCATTCAGCAACTAAATTCATAGCTGGACATAGTGATGTCATGGCAGGTGTTCTTGCTGTAAAGGGGAAAAGTTTGGCCAAAGATATCTATTTCCTGCAGAATGCAGAAGGTTCAGGTCTGGCTCCATTTGACTGTTGGCTATGCTTGCGAGGGATCAAAACAATGGCTTTGCGCATTGAGAAACAACAGGAGAATGCAAGGAAAATTGCAGAATTTTTGTCATCTCATCCTCTGATTGAGAAAGTATATTATGCTGGCCTTCCTAGCCACCCAGGCCACTATTTACATTTTTTGCAGTCAAAAGGAGGAGGTTCAGTTCTTAGCTTTCAAACTGGCTCTTTGGCTCTTTCAAAGCACATCGTCGAAAACACAAGACTTTTCAGCATAACTGTTAGTTTTGGTAGTGTGAAGTCACTCATCAGTCTTCCATGTTTCATGTCACATGCAAGTATACCCTCTGAAGTACGAAAGTCCCGGGGATTAAGTGAAGATTTAATTCGCCTTTCTGTCGGGATTGAGGATGCAGAAGACCTGATTGTTGATTTAGACCAAGCAATTAAATCTGCATCTGTCTAA___TGTCAGCTGATTGATACTTTGGAAACAGGTTATGTGAGTTCATGAAATCAAGTAAAATCTGAAATCGACATTTGTTGAGTTCATGGGGTTGTATGTGCACAATATAAGGTTTTGGGATCTAAGAAACTGGAGATCTTGCTTTGTATGATCAACTTAGCTCCAACAACTTGCATCTGGTGAATTACAGAGTTAACAGTCTTTTTGTGGATGCTGCGTATTAGGAAGTGAAAAGTAGATCTTTTTTTTTTGAAATAATTAATATATACTAAAATAATCAGAATGTTGTTTATTGGGGCAGTTTCTTCTCCTACCTAGAAAAATGATCTGGTTTGGCAAATATA

Fln Alignment:

Contig2312___SSRSRWSPELC--RNRSLT---RVSVRCSSDKELKLTMAAIVNNDTDCVAEDSSAALCENVHTGVQEKELSVSTILVNFSNSFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDSLEALLAKLEGADRAFCFTSGMAALSAVTHLVEAGQEIVAGDDIYGGSDRLLSRVVPKDGIIVKRVDTTNVEEVAAAVGPLTKVVWLESPTNPRQKISDIRKISEIAHAHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGKSLAKDIYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAEFLSSHPLIEKVYYAGLPSHPGHYLHFLQSKGGGSVLSFQTGSLALSKHIVENTRLFSITVSFGSVKSLISLPCFMSHASIPSEVRKSRGLSEDLIRLSVGIEDAEDLIVDLDQAIKS
B9RGV9______________ASKGLWVGKECNFRGKRLTFPKLFKMNCSLDKEMDVSTSAVVDGVAECSNE-------------IDIREPNISTILMNFENKFDPYDAMSMPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALAAVTHLVETGQEIIAGDDIYGGSDRLLSQVTPKSGVVVKRVNTSNLDEVASAIGPWTKLVWLESPTNPRQQISDIRKIAKIAHTHGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLARDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQDNAQKIAEFLATHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLELSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPADVREARGLTEDLIRISVGIEDVNDLIADLDHALRT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
926	62		37		1.0
1654	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain