SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2310

Length: 779 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2310 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase 1 [Arabidopsis thaliana]	-	-	0.0	43%
FL-Next	sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Sma3	E3 ubiquitin protein ligase upl2, putative	-	-	5.237e-09	-

Source	Gene names
Sma3	At1g55860; At1g70320; F14J16.14; F14J16.37; F17O7.14; F17O7.15; GSVIVT00033389001; Os09g0252700; OsI_30556; OsI_38149; OsJ_28543; OsJ_35924; P0574F11.30; PHYPADRAFT_137606; POPTRDRAFT_1093798; POPTRDRAFT_815774; RCOM_0482820; RCOM_0522490; UPL1; UPL2;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	acid-amino acid ligase activity	GO:0016881	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GY23

Fln msg: Overlapping hits, possible frame ERROR between 709 and 700, Distance to subject end: 2880 aas, your sequence is shorter than subject: 259 - 3681

Fln protein: FSSAVTLMSELIHKDPTCFSTLHAAGLTTAFLDAISEDLLLPSSKALCCIPSGLDALCLNNTGLQAVTEGNALQFLVHVFTLRKYLLPLNEGVAHLANSMEELMRHVPSLRGPGVDVIIEILEKVASAGDTGSEAKDRLDSPVPMDTDSEDKHNEGVGTSGLAVENMSNERFLQLCNSHAMVFVHRAMENPETCRIFVEKKGIEALMRFLTLPSIPLSSEGMSVAVHMTLQSxxxxxQQHSAALARVFCAYLREHLKTT

Protein Length: 260

Fln nts: CTTCTCTTCGGCGGTGACACTTATGAGTGAACTAATCCATAAAGATCCGACTTGTTTTTCAACGCTGCATGCAGCAGGTCTTACTACTGCCTTCTTGGATGCTATATCAGAAGATTTACTTCTCCCTTCTTCAAAAGCACTTTGCTGCATCCCTAGTGGTCTTGATGCACTATGTCTTAACAATACAGGGTTGCAGGCAGTGACTGAAGGAAATGCGTTGCAGTTTCTTGTACATGTCTTTACATTACGCAAGTATTTGCTACCATTGAATGAAGGGGTTGCTCATTTGGCTAATTCAATGGAAGAGCTAATGCGCCATGTCCCTTCTTTGAGGGGACCTGGTGTAGATGTTATCATTGAAATTCTTGAGAAAGTTGCGTCAGCAGGTGACACAGGGTCAGAAGCCAAAGACAGATTGGATAGTCCTGTTCCTATGGATACGGATTCTGAAGATAAACATAATGAAGGGGTTGGGACAAGTGGATTGGCTGTTGAAAATATGAGTAATGAACGCTTTCTACAATTATGCAATTCACATGCCATGGTGTTTGTCCATCGGGCAATGGAAAATCCTGAAACTTGTAGAATATTTGTTGAGAAAAAGGGCATAGAAGCTCTTATGAGGTTCTTGACCCTTCCAAGTATTCCACTCTCTTCGGAGGGGATGTCTGTAGCTGTGCACATGACGTTGCAGTCTxxxxxxxxxxxxxxxCAGCAACACTCAGCAGCCCTTGCACGGGTATTTTGTGCTTATCTGAGAGAGCATCTCAAGACTACATT

Fln Alignment:

Contig2310___FSSAVTLMSELIHKDPTCFSTLHAAGLTTAFLDAISEDLLLPSSKALCCIPSGLDALCLNNTGLQAVTEGNALQFLVHVFTLRKYLLPL-NEGVAHLANSMEELMRHVPSLRGPGVDVIIEILEKVASAGD----TGSEAKDRLDS--PVPMDTDSEDK----HNEGVGTSGLAVENMSNERFLQLCNSHAMVFVHRAMENPETCRIFVEKKGIEALMRFLTLPSIPLS-SEGMSVAVHMxxxxxxxxAALARVFCAYLREHLKTT
Q8GY23______________FSLAATVMSDLIHKDPTCFNALDSAGLTSTFLDAISDEVIC-SAEAITCIPQCLDALCLNNSGLQAVKDRNALRCFVKIFTSPSYLRALTGDTPGSLSSGLDELLRHQSSLRTYGVDMFIEILNSMLIIGSGMEATTSKSADVPTSAAPVPMEIDVDEKSLAVSDEAEPSSDTSPANI--ELFLPDCVCNVARLFETVLQNAEVCSLFVEKKGIDAVLQLFSLPLMPLSTSLGQSFSVAFxxxxxxxxAGLARIVCSYLREHLKKT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
310	16	83			0.994512
311	16	83			0.994512
312		83		16	0.994512
313		83	16		0.994512
394	20	80			0.995493
396			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain