SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2305

Length: 517 nt

UniGene Fasta

>sp_v3.0_unigene2305
ATCTGCAGAAGTTCAGTTGCTAACTGAAGACAAGCGTGGTGCTGAAGTTGGATCTCCACCAGGTCATGCAAAAAAGAGAGATCAACATGCTCCAGAACATTCTTTGCCTGAGGCTGGATTTTCCCCAGTAAACATGTTAGATGCTCCTGATAATGAATTGAGTTTTTTAACCAGATCTCATGTCCTTAAGGTTCAGCCTACAGATGACTGGTTGGATAATGATATGGAAAGTGAGGAGTGGTTAGAGGAGTCATCACCGGGATTTGATGTACTTGTAGATGATGGACCTGAGCAGCTTGGTTTCCAGGAGGAAGCTGAATATCTATCTAACTTTGATATGGAACAAGGACAAGAACTAACTCATGGTAGGGAAAGAATAATACCTATGACAGATGAGATGTTGCACTTCGATTATGAAGGGATGCATGATGACCTGTGTTACACTGAAGGTGGAAACCAGTATGCTTACAGGTCATATGATCCATATGAAGAACACATACATTCTTCTTATGACATT

Ace file of the UniGene sp_v3.0_unigene2305

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEP4_RICCO	-	-	8.0e-07	32%
FL-Next	tr=Nucleic acid binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	32%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SEP4

Fln msg: Distance to subject end: 211 aas, your sequence is shorter than subject: 172 - 530

Fln protein: SAEVQLLTEDKRGAEVGSPPGHAKKRDQHAPEHSLPEAGFSPVNMLDAPDNELSFLTRSHVLKVQPTDDWLDNDMESEEWLEESSPGFDVLVDDGPEQLGFQEEAEYLSNFDMEQGQELTHGRERIIPMTDEMLHFDYEGMHDDLCYTEGGNQYAYRSYDPYEEHIHSSYDI

Protein Length: 173

Fln nts: ATCTGCAGAAGTTCAGTTGCTAACTGAAGACAAGCGTGGTGCTGAAGTTGGATCTCCACCAGGTCATGCAAAAAAGAGAGATCAACATGCTCCAGAACATTCTTTGCCTGAGGCTGGATTTTCCCCAGTAAACATGTTAGATGCTCCTGATAATGAATTGAGTTTTTTAACCAGATCTCATGTCCTTAAGGTTCAGCCTACAGATGACTGGTTGGATAATGATATGGAAAGTGAGGAGTGGTTAGAGGAGTCATCACCGGGATTTGATGTACTTGTAGATGATGGACCTGAGCAGCTTGGTTTCCAGGAGGAAGCTGAATATCTATCTAACTTTGATATGGAACAAGGACAAGAACTAACTCATGGTAGGGAAAGAATAATACCTATGACAGATGAGATGTTGCACTTCGATTATGAAGGGATGCATGATGACCTGTGTTACACTGAAGGTGGAAACCAGTATGCTTACAGGTCATATGATCCATATGAAGAACACATACATTCTTCTTATGACATT

Fln Alignment:

Contig2305___TRSHVLKVQPTDDWLDNDMESEE-WLEESSPGFDVLVDDGPEQLGFQEEAEYLSNFDMEQGQELTHGRERIIPMTDEMLHFDYEGMHD-DLCYTEGGNQYAYRSYD--PYEEHIHSSYDI
B9SEP4______________SRSLAYTTQSPEEEMDDHVEPEERW--ESSPGFDVLVDDKSENLDYEDDQEYLLPLDMEQRDP-----------NNCFLGYDFENLVEYDHAYHDAEDDYGSGKYDNTDFADNVHIFDDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain