SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2297

Length: 2933 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2297
CGTCGTGACCTTGGCTGTCACTCATAGAAAGGATGAAAATCATTTAGCGTTCTTTCCGTCGTGACCTTGGCTGTCACTCATTTTTCATTCTCTGATGAGCTCTGCTACCGAAAATTATGAAACCATCGGAAAGGTAGGGTGCACGGATTAAGCTCATTTGCAGGAAACACATACTTCAACAATGGCAGGAACGGGTTTCTCGTTCGGCTCATCCTCGTCTTCAACGCCTGCCATGGGCGCCTCCACCGGCTCTGCATCCCAGCCGACTTTCGGTTTTTCGTTCCCTAACCAATCCGCGGGCTCTTCGATCTTCGGCTCGTCGTCCACTTCAGCAGCAACACCCTCCTCTGCATCCTCACTATTCGGATCTTCGACGCAATCATCTACATTGTTCGGAACACCGTTGTCTTCCCCTTCAAATTTCGGAACCCCGTCGTCTCAGACCTCGGCACCATCGTCTACGCCTGCGTTCTCGTTCGGCGGTGGCTCCACTTTTCAACCTAAATCCACGGCTTCCTCGTTCACTAGCTTTTCTTTAGGTTCGTCCTCGGCTCCAGCACCTTCATTTTCGTTCGGCACCTCTGCATCTTCGGCACCTGCATCTTCCTCGGCCTCAGCCCCCAGTTTCCTGTTTGGCACCGCTGCTTTGACTTCGGCCACGCCTTCTTTCGCTTTTAGCAACCCGGCGTCATCCGCTGGTTTCCCATTCGGTACTCCGACGTCCTCCGCGGCAACCCCATCTTTTAGTACTCCCGCTACTTCGAGCCCCAGTTTGTCCTTCGGTACGCCCGCTGCATCGTCGGCTTCAGCCTCAGGTTTTTCTTTTGCGACCCCGACGTCCTCATCCTCAACGAGCGGTCTGTCTTTCGGTGCAGCTTCCCAGCCAGGGTCGACCCCGGGACCTTCTTTTGGGACGCCCACACAGCCCGCTTCGAGCCCAGCTCCATTGTTTGGGACCCCGCCATCGGCGTTCAAAACCCCAGGCACGTCTTTTGGAACACCTACACAAGCATCTTCAGCCGCACCCTTTGCTTTCAACACTGCTGTGGCAACCTCATCGTCTTCAACCTCAAGTCTGTCTTTTGGTACTTCGGGGCCATCTTCGGTTTCCACCCCAGGTTTACCATTTGGAACTCCCGCATCATCATCCACTTCGACACCAGGCTTAGCTTTTGGAACCCCGGCTTCTTCGTTTTCCGGGTCTAGCTCATCTCAGCCTTCATTTGGATTTGGCAATGTGGGTTCTGGTGCTGCAACTGCTGCGCCATCCTCACAGATGCCTTCATTATCTGGAGGGTTTGGTTCATCCGCTTCTTCTACAGGCGTATCGTTTCCTTTGCTCGGTCAATCCAGTGCGGCAAAACAGTCTACCGTTGTTGCTACTTCTGCTTCTACAGGAATGCAATCTTTTGGGCAGCCATCTTTGACAGGGGCAAGTTCTGCCGGCACATCTGGCGCATTCCCTAGCTTCTCCTTATCTTCAGCATCAACGTCATTAACATCTGCACCGTTGTTAATTAGTACTGCATCTACTTCATCAGCGACAGCAACTGCATCTACAACTAGTACGCCACTTTCTGGTTTTGCTGGAGTTACTGCATCTAGTGCAGCCCAAGTGTCATCTTCTGCTACTGCTGGAACAACTGGCAGGAAACTGTGGAATCTCTTCAGTACTGGAGCTTTGTCGCTTTGTGGCTGCTGGAAATTCCCTGTGGGCTAACTGGTTCAATTGTTGAGGAGATTATCAAAGATTGGAATTCTGAGTTACAAGAACGTACTACAAAATTCCGAAAGCAAGCTGAGGCTTTAGCAGAATGGGATCGGAGGATCTTACGGAATCGAAATGTACTTATAAAGCTGGAGAGTGAAGTTGCTAAAGTGGTAGAGTCACAACATAGCTTGGAAAGACAACTTGAGCTGATTGAGACTCATCAACAACAGGTAGAAAAGGCCTTACAAAGCATGGAAGAAGAGGCTGAGAGGATATACAAGGAGGAGCGGCCATCCATTACTGAAGATGAAGCTGCATCAGTTAGAGATTTAATGTATGAACAGGCAGAGTATATTGAAAGAGAAATGGAGCAGATGGGAGAACAAATTAAGCGAATAATAGAGACTGTAAATGCAAATCAGGGTGGGGACTTGGATAACTCTGATGGGATCAGTCCGCTGGACATTGTAGTAAGAATTTTGAACAATCAATTGAATTCCCTGGTTTGGATTGATGAAAAGGCTGGAGAGTTATCATCGCGTATAAACAAGCTTGCTAATCACGGGGCTGCTTTAGATAGAGGTCCTCCGAGGTCCAGACATTGGATTGGTTGACAGCAATTGATAGAAAACGTGCATACTAATAGAAGCTTTGCCACGTGTTGCAAATGATATGTGCCCTGCAGTTTGGAGTATACATGCTTTGGCAATTTTTTATTTCAAGTTTCTTGTCCTTGTAATATCCTTCATTGAAATGAGCGAAAAATGTCTTTTTACTGGTTATTAGGATCCTATAATACATTTTGCAAGAAGGCTTCTAATCATTGTAAAATATAGGAAATAATGATTTTCTTGTGTGAAATAATGTTAACTGCAGCTGAAGCTCAAGTCCATCTCAATAATACCCACTCGATATGGATCAGTAAAGGCAAGAGTGACCGAATTGCAAATATGTGTATTTCAGAGTGAAATCATAGAAAATTATCTCCCAAGCCTGCTGCTCAATTTAGAAGTTGCCTTTCATCGTGAACAATTCACTTTCAAGTATTGAATCATGCTCATTTTGAATATTCTGCAAATCTTCTAATTAGCCCTGCTTATGCAAAGCTTATACCATATATATTAATGTCCCGTGGATTATGAAATTCTAGTCAAGCGCTTGTTTAACATCTAACTTTTTGTAGATAACAAGGTAAGACAATTGTTAGAAGAAAAGATCTTTG

Ace file of the UniGene sp_v3.0_unigene2297 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	structural constituent of nuclear pore [Arabidopsis thaliana] gb\|AAM91808.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10495.1\| structural constituent of nuclear pore [Arabidopsis thaliana]	-	-	0.0	64%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	68%

Source	Gene names
Sma3	At2g45005; GSVIVT00019147001; Os01g0856600; OsI_04485; OsJ_04120; PHYPADRAFT_166175; POPTRDRAFT_781293; RCOM_1609340; VITISV_016403;

Source	GOs	Term	Type	e value	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	0.0	-
Sma3	structural constituent of nuclear pore	GO:0017056	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-
Sma3	Nucleoporin, NSP1-like, C-terminal	IPR007758	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45000.1	EMB2766 structural constituent of nuclear pore chr2:18564156-18567632 FORWARD LENGTH=739	68%
RefSeq	Arabidopsis thaliana	NP_850429.1	structural constituent of nuclear pore [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002327002.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9MV05

Fln msg: W1: There is no M at the beginning,

Fln protein: CSPSVIFCYCWNNWQETVESLQYWSFVALWLLEIPCGLTGSIVEEIIKDWNSELQERTTKFRKQAEALAEWDRRILRNRNVLIKLESEVAKVVESQHSLERQLELIETHQQQVEKALQSMEEEAERIYKEERPSITEDEAASVRDLMYEQAEYIEREMEQMGEQIKRIIETVNANQGGDLDNSDGISPLDIVVRILNNQLNSLVWIDEKAGELSSRINKLANHGAALDRGPPRSRHWIG*

Protein Length: 241

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGAAAGGATGAAAATCATTTAGCGTTCTTTCCGTCGTGACCTTGGCTGTCACTCATTTTTCATTCTCTGATGAGCTCTGCTACCGAAAATTATGAAACCATCGGAAAGGTAGGGTGCACGGATTAAGCTCATTTGCAGGAAACACATACTTCAACAATGGCAGGAACGGGTTTCTCGTTCGGCTCATCCTCGTCTTCAACGCCTGCCATGGGCGCCTCCACCGGCTCTGCATCCCAGCCGACTTTCGGTTTTTCGTTCCCTAACCAATCCGCGGGCTCTTCGATCTTCGGCTCGTCGTCCACTTCAGCAGCAACACCCTCCTCTGCATCCTCACTATTCGGATCTTCGACGCAATCATCTACATTGTTCGGAACACCGTTGTCTTCCCCTTCAAATTTCGGAACCCCGTCGTCTCAGACCTCGGCACCATCGTCTACGCCTGCGTTCTCGTTCGGCGGTGGCTCCACTTTTCAACCTAAATCCACGGCTTCCTCGTTCACTAGCTTTTCTTTAGGTTCGTCCTCGGCTCCAGCACCTTCATTTTCGTTCGGCACCTCTGCATCTTCGGCACCTGCATCTTCCTCGGCCTCAGCCCCCAGTTTCCTGTTTGGCACCGCTGCTTTGACTTCGGCCACGCCTTCTTTCGCTTTTAGCAACCCGGCGTCATCCGCTGGTTTCCCATTCGGTACTCCGACGTCCTCCGCGGCAACCCCATCTTTTAGTACTCCCGCTACTTCGAGCCCCAGTTTGTCCTTCGGTACGCCCGCTGCATCGTCGGCTTCAGCCTCAGGTTTTTCTTTTGCGACCCCGACGTCCTCATCCTCAACGAGCGGTCTGTCTTTCGGTGCAGCTTCCCAGCCAGGGTCGACCCCGGGACCTTCTTTTGGGACGCCCACACAGCCCGCTTCGAGCCCAGCTCCATTGTTTGGGACCCCGCCATCGGCGTTCAAAACCCCAGGCACGTCTTTTGGAACACCTACACAAGCATCTTCAGCCGCACCCTTTGCTTTCAACACTGCTGTGGCAACCTCATCGTCTTCAACCTCAAGTCTGTCTTTTGGTACTTCGGGGCCATCTTCGGTTTCCACCCCAGGTTTACCATTTGGAACTCCCGCATCATCATCCACTTCGACACCAGGCTTAGCTTTTGGAACCCCGGCTTCTTCGTTTTCCGGGTCTAGCTCATCTCAGCCTTCATTTGGATTTGGCAATGTGGGTTCTGGTGCTGCAACTGCTGCGCCATCCTCACAGATGCCTTCATTATCTGGAGGGTTTGGTTCATCCGCTTCTTCTACAGGCGTATCGTTTCCTTTGCTCGGTCAATCCAGTGCGGCAAAACAGTCTACCGTTGTTGCTACTTCTGCTTCTACAGGAATGCAATCTTTTGGGCAGCCATCTTTGACAGGGGCAAGTTCTGCCGGCACATCTGGCGCATTCCCTAGCTTCTCCTTATCTTCAGCATCAACGTCATTAACATCTGCACCGTTGTTAATTAGTACTGCATCTACTTCATCAGCGACAGCAACTGCATCTACAACTAGTACGCCACTTTCTGGTTTTGCTGGAGTTACTGCATCTAGTGCAGCCCAAGTGTCATCTTCTGCTACTGCTGGAACAACTGGCAGGAAACTGTGGAATCTCTTCAGTACTGGAGCTTTGTCGCTTTGTGGCTGCTGGAAATTCCCTGTGGGCTAACTGGTTCAATTGTTGAGGAGATTATCAAAGATTGGAATTCTGAGTTACAAGAACGTACTACAAAATTCCGAAAGCAAGCTGAGGCTTTAGCAGAATGGGATCGGAGGATCTTACGGAATCGAAATGTACTTATAAAGCTGGAGAGTGAAGTTGCTAAAGTGGTAGAGTCACAACATAGCTTGGAAAGACAACTTGAGCTGATTGAGACTCATCAACAACAGGTAGAAAAGGCCTTACAAAGCATGGAAGAAGAGGCTGAGAGGATATACAAGGAGGAGCGGCCATCCATTACTGAAGATGAAGCTGCATCAGTTAGAGATTTAATGTATGAACAGGCAGAGTATATTGAAAGAGAAATGGAGCAGATGGGAGAACAAATTAAGCGAATAATAGAGACTGTAAATGCAAATCAGGGTGGGGACTTGGATAACTCTGATGGGATCAGTCCGCTGGACATTGTAGTAAGAATTTTGAACAATCAATTGAATTCCCTGGTTTGGATTGATGAAAAGGCTGGAGAGTTATCATCGCGTATAAACAAGCTTGCTAATCACGGGGCTGCTTTAGATAGAGGTCCTCCGAGGTCCAGACATTGGATTGGTTGA___CAGCAATTGATAGAAAACGTGCATACTAATAGAAGCTTTGCCACGTGTTGCAAATGATATGTGCCCTGCAGTTTGGAGTATACATGCTTTGGCAATTTTTTATTTCAAGTTTCTTGTCCTTGTAATATCCTTCATTGAAATGAGCGAAAAATGTCTTTTTACTGGTTATTAGGATCCTATAATACATTTTGCAAGAAGGCTTCTAATCATTGTAAAATATAGGAAATAATGATTTTCTTGTGTGAAATAATGTTAACTGCAGCTGAAGCTCAAGTCCATCTCAATAATACCCACTCGATATGGATCAGTAAAGGCAAGAGTGACCGAATTGCAAATATGTGTATTTCAGAGTGAAATCATAGAAAATTATCTCCCAAGCCTGCTGCTCAATTTAGAAGTTGCCTTTCATCGTGAACAATTCACTTTCAAGTATTGAATCATGCTCATTTTGAATATTCTGCAAATCTTCTAATTAGCCCTGCTTATGCAAAGCTTATACCATATATATTAATGTCCCGTGGATTATGAAATTCTAGTCAAGCGCTTGTTTAACATCTAACTTTTTGTAGATAACAAGGTAAGACAATTGTTAGAAGAAAAGATCTTTG

Fln Alignment:

Contig2297___CYCWNNWQETVESLQYW--SFVALWLL---EIPCGLTGSIVEEIIKDWNSELQERTTKFRKQAEALAEWDRRILRNRNVLIKLESEVAKVVESQHSLERQLELIETHQQQVEKALQSMXXXXXXXXXXERPSITEDEAASVRDLMYEQAEYIEREMEQMGEQIKRIIETVNANQGGDLDNSDGISPLDIVVRILNNQLNSLVWIDEKAGELSSRINKLANHGAALDR
B9MV05______________CCTYNNFQHYCSDIIAWTSSSVSTALTATPKLPSEITGKTVEEIIKEWNSELQERTGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAKVVETQANLERKLELIETHQQEVDKALQSIEEEAERIYKDERGSLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVIQTVNANQGGELDAIDGMTPLDMVVRILNNQLSSLMWIDEKAEEFSSRIQKLANQGSAADR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
577		12		87	0.992554
667		30		70	1.0
807			10	90	0.90298
813			18	81	0.999994
822	18			81	0.999994
824			20	80	0.999996
825	90		10		0.90298
826		10		90	0.90298
829		11		88	0.923564
830			11	88	0.923564
982	87	12			0.992554
1026	12			87	0.992554
1027		12	87		0.992554
1028	12			87	0.992554
1029		87		12	0.992554
1201		66	33		0.997452
1202		33		66	0.997452
1207		66	33		0.997452
1208	33			66	0.997452
1209	33		66		0.997452
2247			83	16	0.994512
2470	90		10		0.90298
2501	11		88		0.923564
2648	66		33		0.997452
2670	33		66		0.997452
2727		17	82		1.0
2864	20		80		0.995493
2865	20			80	0.995493
2866	20		80		0.995493
2868	20	80			0.995493
2870			80	20	0.995493
2872		80		20	0.995493
2873	80			20	0.995493
2876	20		80		0.995493
2877	20		80		0.995493
2879		80		20	0.995493
2880	66		33		0.997452
2884		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain