SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2295

Length: 2130 nt

UniGene Fasta

>sp_v3.0_unigene2295
CTCTCTCATAGTGGTGGCCGACACCCTGATAAATCCTAGTCAGATTGCACGCCACTGAGCGTGATGTGGTCGTTGTAACACTCTTAATAAAAATAGCCGAGAAAGTTGGCACGGAAGCGAAAGCAACAGCGCGCTCACAGTCACGTGGAAGCAACATCTCTTCCATTCATGTCTATATAAATAGCTAACTCGGCGATACAGATCGCACATAGTGGAAGACAGCCGAGAGCCCTTTCTCTCCATCTGAGCTTTTGGAGGCCAAGATGATGCTGGGGATCAGGAGATTGGTGGGTGCCAATGGCATCTTCAATGGCAAAAAGAAGAGGATTGGAATTGGCATGAGGGCCATGGCATCAGTCTCTGCTGCTGAGAGCCATGAACCTTCTGTTGTCCTGCCTCAGATGCCTGCATTTGATTACAAGCCCCAGCCTTACACGGGTCCCTTAGCCGAGGAGATATTGAAGAAGAGGAAGCAGTTCCTCGGGCCTTCCAATTTTTATTTCTATGAGAAACCTTTGAATATTGTTGAAGGAAAGATGCAGTACTTGTTTGACGAAGATGGGCGTCGATACCTGGATGCTTATGCAGGCATCGTCTGTATTTCCTGTGGGCACTGTCACCCTGAAATTGTTGATGCTATTATAAAGCAAACAAAGCTCCTGCAGCATGCTACCACAATATATCTTCATCATGCGGTGACAGATCTTGCAGAGGCATTAGCTGCAAAGATGCCAGGAAATCTTAAGGTAGTTTTCTTTGTAAATTCAGGTACGGAGGCAAATGAATTAGCTACGATGATGGCCCGGTTGTACACTGGTAACCATGATATGATTTCAGTGAGAAATGGATACCATGGAAATGGTTCTAACACAATGGGATTGACCAGTCAGAGCAAATGGAAATTTAACGTTGTGCAGAGTGGAGTGCATCACGCAGTCAACCCTAACCCATATCGAGGGATTTTTGGCGCTGATGGGCCACAGTATGCTAAAGATGTTCAAGATATTATCGACTTTGGAACCACTGGACGTGTTGCTGGCTTTATTGCAGAAACTATACAGGGTGTTGGTGGAGCAGTAGAACTAGCACCTGGATACTTGCGAGCAGCTTATGATATTGTACGGAAGGCTGGAGGTGTTTGTATATCTGATGAGGTTCAGACAGGATTTGGTCGTATGGGAAGTCATTACTGGGGCTTTGAAACACAAGGTGTTATCCCTGACATTGTAACTGTGGCCAAGGGTATTGGGAATGGCCTTCCTATTGGTGCTGTTGTGACAACTCCAGAAATTGCACAAGTTTTAACACAACGATCACACTGTGTTACTTTTGGTGGAAATCCAGTCAGTACTGCTGGCGGCCATGCTGTGCTAAAAGTTTTAGACAAAGAAAAACGACAAGAACATAGCGCTGTTGTGGGTGCTCATCTAATCAACCGTTTAAGAGAACTTCAAGACAAATATGAAATCATTGGAGATGTAAGGGGAAGAGGTCTAATGATTGGGGTTGAGCTTGTGACTGATCGAATATCAAAAACACCAGCCAAAGAAGAGACTTCACTTGTGTTTGAGAAGATGAAAGACCTGGGAGTGTTGGTTGGAAGAGGGGGAATGTATGGAAATGTCTTCAGAATCAAGCCTCCAATGTGCTTCACAAAGGAAGATTCTGATTTTCTTGTGGATGTTATGGACTATTCACTGTCAAAACTTTAATTTACTTTTCATAGTTTGGAACAGGTTCGTACTTGTTTCAATAAATTTGCAACTATAAGTGTTGCAATAACATCTGAACTTTTAAGTTATTAGGGAATACATACTCCAGAGTAGATGGGACTTTCAGCAATACTTTCCCTTGGTGCACTGTCCAAACTTTAATGTGTTACACAGTTTGAAACAGTTTGTACTTTGTTTCAATAAATTTGCAACTAAATTTGTTGCAGTAATATCTGAGCGCATGAGACACCACCTCGTTGTCTCTTCGTCTCAGACACTGTAGTAAGCTCCTGTAAGTCTTACAATGTGATTATGTGATGATAACAGCTGTGACTCTTATTGGTTTAATGTTGCTTGTGATGATGTCAGTGACTGTTATGGGTTTTAACGTGATCATTAGATATGTGATTATTTTACT

Ace file of the UniGene sp_v3.0_unigene2295

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alanine-glyoxylate aminotransferase, putative n=1 Tax=Ricinus communis RepID=B9T1D1_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	0.0	-
Sma3	transaminase activity	GO:0008483	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39660.1	AGT2 alanine:glyoxylate aminotransferase 2 chr4:18406797-18409262 FORWARD LENGTH=476	69%
RefSeq	Arabidopsis thaliana	NP_568064.1	alanine:glyoxylate aminotransferase 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002310591.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg:

Fln protein: MMLGIRRLVGANGIFNGKKKRIGIGMRAMASVSAAESHEPSVVLPQMPAFDYKPQPYTGPLAEEILKKRKQFLGPSNFYFYEKPLNIVEGKMQYLFDEDGRRYLDAYAGIVCISCGHCHPEIVDAIIKQTKLLQHATTIYLHHAVTDLAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNGSNTMGLTSQSKWKFNVVQSGVHHAVNPNPYRGIFGADGPQYAKDVQDIIDFGTTGRVAGFIAETIQGVGGAVELAPGYLRAAYDIVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTVAKGIGNGLPIGAVVTTPEIAQVLTQRSHCVTFGGNPVSTAGGHAVLKVLDKEKRQEHSAVVGAHLINRLRELQDKYEIIGDVRGRGLMIGVELVTDRISKTPAKEETSLVFEKMKDLGVLVGRGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL*

Protein Length: 484

Fln nts: CTCTCTCATAGTGGTGGCCGACACCCTGATAAATCCTAGTCAGATTGCACGCCACTGAGCGTGATGTGGTCGTTGTAACACTCTTAATAAAAATAGCCGAGAAAGTTGGCACGGAAGCGAAAGCAACAGCGCGCTCACAGTCACGTGGAAGCAACATCTCTTCCATTCATGTCTATATAAATAGCTAACTCGGCGATACAGATCGCACATAGTGGAAGACAGCCGAGAGCCCTTTCTCTCCATCTGAGCTTTTGGAGGCCAAG_-_ATGATGCTGGGGATCAGGAGATTGGTGGGTGCCAATGGCATCTTCAATGGCAAAAAGAAGAGGATTGGAATTGGCATGAGGGCCATGGCATCAGTCTCTGCTGCTGAGAGCCATGAACCTTCTGTTGTCCTGCCTCAGATGCCTGCATTTGATTACAAGCCCCAGCCTTACACGGGTCCCTTAGCCGAGGAGATATTGAAGAAGAGGAAGCAGTTCCTCGGGCCTTCCAATTTTTATTTCTATGAGAAACCTTTGAATATTGTTGAAGGAAAGATGCAGTACTTGTTTGACGAAGATGGGCGTCGATACCTGGATGCTTATGCAGGCATCGTCTGTATTTCCTGTGGGCACTGTCACCCTGAAATTGTTGATGCTATTATAAAGCAAACAAAGCTCCTGCAGCATGCTACCACAATATATCTTCATCATGCGGTGACAGATCTTGCAGAGGCATTAGCTGCAAAGATGCCAGGAAATCTTAAGGTAGTTTTCTTTGTAAATTCAGGTACGGAGGCAAATGAATTAGCTACGATGATGGCCCGGTTGTACACTGGTAACCATGATATGATTTCAGTGAGAAATGGATACCATGGAAATGGTTCTAACACAATGGGATTGACCAGTCAGAGCAAATGGAAATTTAACGTTGTGCAGAGTGGAGTGCATCACGCAGTCAACCCTAACCCATATCGAGGGATTTTTGGCGCTGATGGGCCACAGTATGCTAAAGATGTTCAAGATATTATCGACTTTGGAACCACTGGACGTGTTGCTGGCTTTATTGCAGAAACTATACAGGGTGTTGGTGGAGCAGTAGAACTAGCACCTGGATACTTGCGAGCAGCTTATGATATTGTACGGAAGGCTGGAGGTGTTTGTATATCTGATGAGGTTCAGACAGGATTTGGTCGTATGGGAAGTCATTACTGGGGCTTTGAAACACAAGGTGTTATCCCTGACATTGTAACTGTGGCCAAGGGTATTGGGAATGGCCTTCCTATTGGTGCTGTTGTGACAACTCCAGAAATTGCACAAGTTTTAACACAACGATCACACTGTGTTACTTTTGGTGGAAATCCAGTCAGTACTGCTGGCGGCCATGCTGTGCTAAAAGTTTTAGACAAAGAAAAACGACAAGAACATAGCGCTGTTGTGGGTGCTCATCTAATCAACCGTTTAAGAGAACTTCAAGACAAATATGAAATCATTGGAGATGTAAGGGGAAGAGGTCTAATGATTGGGGTTGAGCTTGTGACTGATCGAATATCAAAAACACCAGCCAAAGAAGAGACTTCACTTGTGTTTGAGAAGATGAAAGACCTGGGAGTGTTGGTTGGAAGAGGGGGAATGTATGGAAATGTCTTCAGAATCAAGCCTCCAATGTGCTTCACAAAGGAAGATTCTGATTTTCTTGTGGATGTTATGGACTATTCACTGTCAAAACTTTAA___TTTACTTTTCATAGTTTGGAACAGGTTCGTACTTGTTTCAATAAATTTGCAACTATAAGTGTTGCAATAACATCTGAACTTTTAAGTTATTAGGGAATACATACTCCAGAGTAGATGGGACTTTCAGCAATACTTTCCCTTGGTGCACTGTCCAAACTTTAATGTGTTACACAGTTTGAAACAGTTTGTACTTTGTTTCAATAAATTTGCAACTAAATTTGTTGCAGTAATATCTGAGCGCATGAGACACCACCTCGTTGTCTCTTCGTCTCAGACACTGTAGTAAGCTCCTGTAAGTCTTACAATGTGATTATGTGATGATAACAGCTGTGACTCTTATTGGTTTAATGTTGCTTGTGATGATGTCAGTGACTGTTATGGGTTTTAACGTGATCATTAGATATGTGATTATTTTACT

Fln Alignment:

Contig2295___MMLGIRRLVGANGIFNGKKKRIGIGMRAMASVSAAESHEPSVVLPQMPAFDYKPQPYTGPLAEEILKKRKQFLGPSNFYFYEKPLNIVEGKMQYLFDEDGRRYLDAYAGIVCISCGHCHPEIVDAIIKQTKLLQHATTIYLHHAVTDLAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNGSNTMGLTSQSKWKFNVVQSGVHHAVNPNPYRGIFGADGPQYAKDVQDIIDFGTTGRVAGFIAETIQGVGGAVELAPGYLRAAYDIVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTVAKGIGNGLPIGAVVTTPEIAQVLTQRSHCVTFGGNPVSTAGGHAVLKVLDKEKRQEHSAVVGAHLINRLRELQDKYEIIGDVRGRGLMIGVELVTDRISKTPAKEETSLVFEKMKDLGVLVGRGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL
A9NW66______________MMLGIRRLVSANGIFNGSKKRIGISMRAMTSVSAAESHEPAVLLPQMPAFDYKPQPYTGPLADEILKKRKQFLGPSNFYFYDKPLNIVEGKMQYLFDEDGRRYLDAFAGIVCISCGHCHPEVVDTIVKQTKLLQHTTTIYLHHAVTELAEALAAKMPGNLKVVFFVNSGTEANELATMMARLYTGNHDMISVRNGYHGNSANTMGLTSQSKWKFNIVQSGVHHAVNPNPYRGVFGSDGPQYAKDVQDIIEFGTTGRVAGFIAETIQGVGGAVELAPGYLPAVYDSVRKAGGVCISDEVQTGFGRMGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAQVLTQRSHCVTFGGNPVCTAGGHAVLKVLDKEKRQEHCAVVGAHLINRLKELQDKYEIIGDVRGRGLMVGVELVTDRTSKTPAREETSLAFERMKDLGVLVGKGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1611	5		70		1.0
1907	90			10	0.90298
2010	25		75		1.0
2061	72	27			1.0
2079	20			80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain