SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2293

Length: 4129 nt

UniGene Fasta

>sp_v3.0_unigene2293
TGGCATTGCCCTACATTAATGCCCAGAGTCCTGCAAGAGTCTCAATTGCTGCTGCAAGGCTATTTCCAGTCAAGAGTCAGTGATTGTGCAGTAGTTTCAGTTCAATATATGGGCTGAGAAGCAAATATATCGAATTTTTTTGGCTCTCGGTGCAAATCTCCTCGGTACCAACATCTTTGAACTGGTGTTTGGTATCCATCAAGTGGGTCCGAGAGCCCACATTGTTTAATCCTTGGAAGGTTGCTACCCAGTTGTTGTGTTAGGGGAAGCAAGGATGAGGTCTTCCCGGAGCACATTTTTGTAGCTTCGTTGATATTTCATCTAGTTAGGTGGATCAGAATCTTTCAACCACCGTTATATTTTGAAGATTTCCAGGTTTCTACATCTCCGCCTTGGTTTTCTGGTTTTTTGACATTTAAATTGAGACTCTGTTTTGGTATTGCATTGTCTCTCCTTTATTTAGGCCTCCATGCTCATCTTGTCTTCGACACCTGTACGAAGTTAGCCCAGATTGAGGCATATCTTGTTTCTTCATTCATTTTATTCGAGTCCAGATACAGAAGTGGAAGAATATTTAATACTAGCCTTGAAATTCTGAGGATGCAAACCCAAATGGCCCATTTTCAAGATGAAGCTAAGAAGCATAGTGGTTTTGATTTGTATGGAGGACTTTTCAACAATAGGATCTTTGGGTCAGTTAAATCGGATGGAAATTTGGATCGTTCTCAAAGATGGTCCAAGCATAATGGTGGAATTTACAGTCCCTCTGCTTATTCTTTCAGCAAGGATGGTGCTGAGAGACAGCCTGTGTACAATGCAAGCCTTGGGCAAGATATGAAGAAGAATTCGAATGGAGGAACTGCGGAGATTGGACAGGGTGTGAATAAGAATTCGAAAAGTGAAACTGGGAGTGGAGGATTTGCGGAGAATGGGAATTCAAAGGGATCTGTGCAGAATAGTGACTTGGGAAGACTCAATGTGGACATTAAGAAGGAGAATTCAGACGGTAAAGAGGAGAGTTATTCGAAAGTAGATACCCCACAATTGCGTTTGAGTGATTTCTCAGACAACTCTTTGAGAAACAGTCCTCGTTCTGAAAGCTTTAGCCTTGGGAGAAAATCATCAGATGCAAGCAGTTGCAGTTCTTGGGGGTCTGGGTCTGGTAGCTTTAAGGGAATCAGTCCAGGGAGAGTAAGTCCCGTGGTAGGAAATGTGAAGGTGTCTCGCAATCATTCTGGTGAATTAAGCACCGGTTCATTGAGTGGAGAGAGCTCAAATGGAGGAAGTCCTACTGCTGAAAGCAGACGAAGGTCTTCAAGTGCTGGGAATATTCTTGCAAATGGGTTTACAAGGGTACATAACAGTGCTACAGCAGGCAACACTGTTAATTCCAATGGGCCTTTAGGAAGTGGTATGATCACTGGCGCAGGTTCGGGGAACCAGAAGCTTGACTCATGCCGATCCCTGGTAAGCAACAATGACTGCCCTCCTTCTCTAAAGAGCAGTTATTCTTCCAGTTCTTCCGGAGAGTTGAGTAATGGCAATGGAAACGCCCTTCCCAATGGAAATAAGCTTCCCACTGGGAACATCCTCCGGGGCAATGTAAAAGTTCCAAGCGGTGCCAAAGGACCTTCGAAGGCAGAGCAGGTAACAACAGGCCATGTTCTGGGGTCGGGGAATGGTAAATATGGACATGGAAGCATAATCAGGGGAAATGGGAGGGCTGAGGGGACTGGAAACATCCAAACTGCTGCTGAAACTATGATTTTGAAGCGCTCTCTCTCAAGTACAGATGCAGAAGATGTGAAGAATGCTGGAAATGAACAATACAAGAAAGGGCACTTTGCCGAGGCACTCTTGTTGTATGATAGGGCGATTGCCTTGTCTCCTGGGCATGCCTTGTATCACAGCAATAAATGTGCTGCACTGACAGGACTTGGCCGTTTAGCCGAGGCAGTCCAGGAATGCCAGAAGGCAATTAGTCTTGATAATTCTTACATTCGTGCACATCAAAAACTTGCATCTCTCTATCTTAGACTGGGGGAGATAGAAAATGCCAGAACACATTTCAAACTTTCTGGGCAGCAGTCAGATTGGAGTGATATACAGAAAGTTCAAACAGTGGAAATGCACCTCTCCAAGTGTGCAGAAGCTCGGAAGATTGGAGACTGGAAAACCGTATTGAAAGAAAGCAATGCAGCTATTATGGCGGGTGCTGATTCTGGACGGCAGTTTTTCGCATCCAAGGCAGAGGCACTACTGAAAGCTCCGAAAGAATTAAGAAGAGGCAGCTACAGTTCTGATGACCGCACCGAAGATAGAAATTAATACATCCACCAGATATTTTGGGATCGCAGGAAATTCTTATCTGCTCCTTGTCCAGACACAGGTGGACATGGCATTAGGAAGGTTTGAGATTGCCGTTGCCAGTGCAGAAAGAGCAGCTCGCATGGATCTATATAATCCCGAGGTAACTGCATTGCTTAGAAAGGCTCGTGCAGTGGCTTATGCTCGCTCAACTGGAAATGCTCTCTTCAAAGCTGGAAAGTTTTTGGAAGCATGTACAGCATATGGGGAAGGGCTTGAACATGATCCCATGAATGCAGTTTTAATATGCAATCGAGCAGCCTGTAGATCCAAGCTCGGCCAATGGGAAAAGGCAGTTGAGGATTGTAATGCTGCTCTAAGCATTCAACCCAACTACACTAAAGCTCTTCTCAGACGGGCAGACTCCAATGCTAAGCTTGAACGATGGGAGGAAGCTTTAAATGATTTTGAAGCTTTGAGGAGAGAAATACCAGGGGATGTAGAAGTAGCTCGAGCTCTTTTTGATGTGCAAGTAGCATTGAAGAGATCTCGCGGAGAAGAAACTAATAACATGAAGTTTGGAGGGGAAGTTGAAGTGGTTTCTAGCAGTGATCAATTTCGAAAAGAAATTACTGCACCGGGTCTGGCAGTAGTACACTTCAGTACAAGATCCAGTGAGAGATGCAAGCAGATATCTCCATTTGTTGATCAGCTTTGTAAAAGACATCCATCTGTAAATTTTCTTAAGGTGGATGTCGAAGAGAATCTATTTTTGGCAAAGTCAGAGAGTGTGAATACCGTGCCCACATTCAAAATTTACAAAAATGGTCTCAAAGTCAAAGAAATTGTTGGGCCAAACCAACAGCTGTTGGAGCACTCAGTGAAACATTATAGCCTTTAGGCAGCTGTCCATAGATTCATGCATTTAGTTGAACATATTTTCATAAAGAAATAAAGTGGATCACCTCCACAGCTTTTTCCCATTCTTTAGGCCTGTGCTTCCCTCTCAGACAGGCTCTGGTATTCCATTGTATTTCATCTGTGCCCCTGTAACAGGTCTACTTTTCACTCTTTCCATTTTTATTTTTTGGTCCCTAGGGTAATTAGAACACAGGGTATCACAGAATTGTATCAGACTTGCAGCAAAATGCAATGCAAAACCATATTCCATGGGTTTGTTGGTATTTACCAAAACGTGGCAGAAATGAGCAATGCAAAACTATATTGCATGGGTTTGTTGGTATTTAGCAAAACGTGGCAGAAATGAGTAATGCAAAACCATATTCCATGGGTTTGTTGGTATTTAGCAAAACGTGACAGAAATGAACTTTGTGGAGAGCCAGAACGTGTATTGCATTTCTCAAGTTGGTGCAGTTGAATTGGGCACTGAGACATATTGTCTTGTATAGCGATGAATTTTGCAGTTCAAACTGATTGGATTTGCACCTGCATCTGCCTGAGATGGTGGTGGCCTAGTTTAGAGATTTTTTTAAGCATTCATTGGTCTGTGTATATATTAAGGATGGAATATATTATAGGATATTCATATGTCTATCCTTCCCACTGAGGCGATCTTTCTGCCTACCATCTTTCTGCTTACCACTGGAGGATGTATATTATAGCCATTGCCACATCCCATTTTATTGCTCTCTGTAACAGTGAATTGACTCTTGTTGGTCCGATCTATATTCGTAGTTTACTGCCATAAATTCTCAGTTCAATACTCTAATTGGCATAATTGGGTCCAAAACTTTGGTGGTGTAGATCTACACAGAATACTTGGATTCTCCTCGTGAATGCGTGTGTTGTCATATGCTGACCA

Ace file of the UniGene sp_v3.0_unigene2293

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPR repeat-containing thioredoxin TTL1 [Arabidopsis thaliana] sp\|Q9MAH1.1\|TTL1_ARATH RecName: Full=TPR repeat-containing thioredoxin TTL1; AltName: Full=Tetratricopeptide repeat thioredoxin-like 1 gb\|AAF69536.1\|AC008007_11 F12M16.20 [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	117M18_8; 80A08_7; At1g53300; At1g78120; At2g42580; At3g58620; At5g65160; F14P22.210; GSVIVT00004044001; GSVIVT00004917001; GSVIVT00014889001; GSVIVT00015248001; GSVIVT00018728001; GSVIVT00021424001; GSVIVT00027802001; OJ1008_D08.9; OJ1288_G09.23; OSJNBa0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015609	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G53300.1	TTL1 tetratricopetide-repeat thioredoxin-like 1 chr1:19879726-19882375 FORWARD LENGTH=699	53%
RefSeq	Arabidopsis thaliana	NP_175737.1	TPR repeat-containing thioredoxin TTL1 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002317465.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZI2

Fln msg: your sequence is longer than subject: 302 - 145

Fln protein: MTAPKIEINTSTRYFGIAGNSYLLLVQTQVDMALGRFEIAVASAERAARMDLYNPEVTALLRKARAVAYARSTGNALFKAGKFLEACTAYGEGLEHDPMNAVLICNRAACRSKLGQWEKAVEDCNAALSIQPNYTKALLRRADSNAKLERWEEALNDFEALRREIPGDVEVARALFDVQVALKRSRGEETNNMKFGGEVEVVSSSDQFRKEITAPGLAVVHFSTRSSERCKQISPFVDQLCKRHPSVNFLKVDVEENLFLAKSESVNTVPTFKIYKNGLKVKEIVGPNQQLLEHSVKHYSL*

Protein Length: 303

Fln nts: TGGCATTGCCCTACATTAATGCCCAGAGTCCTGCAAGAGTCTCAATTGCTGCTGCAAGGCTATTTCCAGTCAAGAGTCAGTGATTGTGCAGTAGTTTCAGTTCAATATATGGGCTGAGAAGCAAATATATCGAATTTTTTTGGCTCTCGGTGCAAATCTCCTCGGTACCAACATCTTTGAACTGGTGTTTGGTATCCATCAAGTGGGTCCGAGAGCCCACATTGTTTAATCCTTGGAAGGTTGCTACCCAGTTGTTGTGTTAGGGGAAGCAAGGATGAGGTCTTCCCGGAGCACATTTTTGTAGCTTCGTTGATATTTCATCTAGTTAGGTGGATCAGAATCTTTCAACCACCGTTATATTTTGAAGATTTCCAGGTTTCTACATCTCCGCCTTGGTTTTCTGGTTTTTTGACATTTAAATTGAGACTCTGTTTTGGTATTGCATTGTCTCTCCTTTATTTAGGCCTCCATGCTCATCTTGTCTTCGACACCTGTACGAAGTTAGCCCAGATTGAGGCATATCTTGTTTCTTCATTCATTTTATTCGAGTCCAGATACAGAAGTGGAAGAATATTTAATACTAGCCTTGAAATTCTGAGGATGCAAACCCAAATGGCCCATTTTCAAGATGAAGCTAAGAAGCATAGTGGTTTTGATTTGTATGGAGGACTTTTCAACAATAGGATCTTTGGGTCAGTTAAATCGGATGGAAATTTGGATCGTTCTCAAAGATGGTCCAAGCATAATGGTGGAATTTACAGTCCCTCTGCTTATTCTTTCAGCAAGGATGGTGCTGAGAGACAGCCTGTGTACAATGCAAGCCTTGGGCAAGATATGAAGAAGAATTCGAATGGAGGAACTGCGGAGATTGGACAGGGTGTGAATAAGAATTCGAAAAGTGAAACTGGGAGTGGAGGATTTGCGGAGAATGGGAATTCAAAGGGATCTGTGCAGAATAGTGACTTGGGAAGACTCAATGTGGACATTAAGAAGGAGAATTCAGACGGTAAAGAGGAGAGTTATTCGAAAGTAGATACCCCACAATTGCGTTTGAGTGATTTCTCAGACAACTCTTTGAGAAACAGTCCTCGTTCTGAAAGCTTTAGCCTTGGGAGAAAATCATCAGATGCAAGCAGTTGCAGTTCTTGGGGGTCTGGGTCTGGTAGCTTTAAGGGAATCAGTCCAGGGAGAGTAAGTCCCGTGGTAGGAAATGTGAAGGTGTCTCGCAATCATTCTGGTGAATTAAGCACCGGTTCATTGAGTGGAGAGAGCTCAAATGGAGGAAGTCCTACTGCTGAAAGCAGACGAAGGTCTTCAAGTGCTGGGAATATTCTTGCAAATGGGTTTACAAGGGTACATAACAGTGCTACAGCAGGCAACACTGTTAATTCCAATGGGCCTTTAGGAAGTGGTATGATCACTGGCGCAGGTTCGGGGAACCAGAAGCTTGACTCATGCCGATCCCTGGTAAGCAACAATGACTGCCCTCCTTCTCTAAAGAGCAGTTATTCTTCCAGTTCTTCCGGAGAGTTGAGTAATGGCAATGGAAACGCCCTTCCCAATGGAAATAAGCTTCCCACTGGGAACATCCTCCGGGGCAATGTAAAAGTTCCAAGCGGTGCCAAAGGACCTTCGAAGGCAGAGCAGGTAACAACAGGCCATGTTCTGGGGTCGGGGAATGGTAAATATGGACATGGAAGCATAATCAGGGGAAATGGGAGGGCTGAGGGGACTGGAAACATCCAAACTGCTGCTGAAACTATGATTTTGAAGCGCTCTCTCTCAAGTACAGATGCAGAAGATGTGAAGAATGCTGGAAATGAACAATACAAGAAAGGGCACTTTGCCGAGGCACTCTTGTTGTATGATAGGGCGATTGCCTTGTCTCCTGGGCATGCCTTGTATCACAGCAATAAATGTGCTGCACTGACAGGACTTGGCCGTTTAGCCGAGGCAGTCCAGGAATGCCAGAAGGCAATTAGTCTTGATAATTCTTACATTCGTGCACATCAAAAACTTGCATCTCTCTATCTTAGACTGGGGGAGATAGAAAATGCCAGAACACATTTCAAACTTTCTGGGCAGCAGTCAGATTGGAGTGATATACAGAAAGTTCAAACAGTGGAAATGCACCTCTCCAAGTGTGCAGAAGCTCGGAAGATTGGAGACTGGAAAACCGTATTGAAAGAAAGCAATGCAGCTATTATGGCGGGTGCTGATTCTGGACGGCAGTTTTTCGCATCCAAGGCAGAGGCACTACTGAAAGCTCCGAAAGAATTAAGAAGAGGCAGCTACAGTTCTG_-_ATGACCGCACCGAAGATAGAAATTAATACATCCACCAGATATTTTGGGATCGCAGGAAATTCTTATCTGCTCCTTGTCCAGACACAGGTGGACATGGCATTAGGAAGGTTTGAGATTGCCGTTGCCAGTGCAGAAAGAGCAGCTCGCATGGATCTATATAATCCCGAGGTAACTGCATTGCTTAGAAAGGCTCGTGCAGTGGCTTATGCTCGCTCAACTGGAAATGCTCTCTTCAAAGCTGGAAAGTTTTTGGAAGCATGTACAGCATATGGGGAAGGGCTTGAACATGATCCCATGAATGCAGTTTTAATATGCAATCGAGCAGCCTGTAGATCCAAGCTCGGCCAATGGGAAAAGGCAGTTGAGGATTGTAATGCTGCTCTAAGCATTCAACCCAACTACACTAAAGCTCTTCTCAGACGGGCAGACTCCAATGCTAAGCTTGAACGATGGGAGGAAGCTTTAAATGATTTTGAAGCTTTGAGGAGAGAAATACCAGGGGATGTAGAAGTAGCTCGAGCTCTTTTTGATGTGCAAGTAGCATTGAAGAGATCTCGCGGAGAAGAAACTAATAACATGAAGTTTGGAGGGGAAGTTGAAGTGGTTTCTAGCAGTGATCAATTTCGAAAAGAAATTACTGCACCGGGTCTGGCAGTAGTACACTTCAGTACAAGATCCAGTGAGAGATGCAAGCAGATATCTCCATTTGTTGATCAGCTTTGTAAAAGACATCCATCTGTAAATTTTCTTAAGGTGGATGTCGAAGAGAATCTATTTTTGGCAAAGTCAGAGAGTGTGAATACCGTGCCCACATTCAAAATTTACAAAAATGGTCTCAAAGTCAAAGAAATTGTTGGGCCAAACCAACAGCTGTTGGAGCACTCAGTGAAACATTATAGCCTTTAG___GCAGCTGTCCATAGATTCATGCATTTAGTTGAACATATTTTCATAAAGAAATAAAGTGGATCACCTCCACAGCTTTTTCCCATTCTTTAGGCCTGTGCTTCCCTCTCAGACAGGCTCTGGTATTCCATTGTATTTCATCTGTGCCCCTGTAACAGGTCTACTTTTCACTCTTTCCATTTTTATTTTTTGGTCCCTAGGGTAATTAGAACACAGGGTATCACAGAATTGTATCAGACTTGCAGCAAAATGCAATGCAAAACCATATTCCATGGGTTTGTTGGTATTTACCAAAACGTGGCAGAAATGAGCAATGCAAAACTATATTGCATGGGTTTGTTGGTATTTAGCAAAACGTGGCAGAAATGAGTAATGCAAAACCATATTCCATGGGTTTGTTGGTATTTAGCAAAACGTGACAGAAATGAACTTTGTGGAGAGCCAGAACGTGTATTGCATTTCTCAAGTTGGTGCAGTTGAATTGGGCACTGAGACATATTGTCTTGTATAGCGATGAATTTTGCAGTTCAAACTGATTGGATTTGCACCTGCATCTGCCTGAGATGGTGGTGGCCTAGTTTAGAGATTTTTTTAAGCATTCATTGGTCTGTGTATATATTAAGGATGGAATATATTATAGGATATTCATATGTCTATCCTTCCCACTGAGGCGATCTTTCTGCCTACCATCTTTCTGCTTACCACTGGAGGATGTATATTATAGCCATTGCCACATCCCATTTTATTGCTCTCTGTAACAGTGAATTGACTCTTGTTGGTCCGATCTATATTCGTAGTTTACTGCCATAAATTCTCAGTTCAATACTCTAATTGGCATAATTGGGTCCAAAACTTTGGTGGTGTAGATCTACACAGAATACTTGGATTCTCCTCGTGAATGCGTGTGTTGTCATATGCTGACCA

Fln Alignment:

Contig2293___GEVEVVSSSDQFRKEI----TAPGLAVVHFSTRSSERCKQISPFVDQLCKRHPSVNFLKVDVEENLFLAKSESVNTVPTFKIYKNGLKVKEIVGPNQQLLEHSVKHYS
A9NZI2______________GSVHIINTSQEWEAKISEANTTGKIVVVDFSATWCGPCNMIAPFYTELSQKHPQLVFLKVDVDELRELSETWNVQAMPTFVFIKNGKQIDTLVGADKSELEKKVKSYA

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
572			41	58	1.0
623		12		87	0.992554
624			12	87	0.992554
763		75		25	0.996473
801	75			25	0.996473
810			66	33	0.997452
811		33		66	0.997452
812	66		33		0.997452
2213			80	20	0.995493
2236		25		75	0.996473
2987			66	33	0.997452
2989		33	66		0.997452
2994	66		33		0.997452
2995	66		33		0.997452
3212	87		12		0.992554
3213			87	12	0.992554
3217	12			87	0.992554
3220	87			12	0.992554
3222	87		12		0.992554
3224	87	12			0.992554
3229		12		87	0.992554
3230			87	12	0.992554
3852	11		88		0.923564
3882	12		87		0.992554
3883	12		87		0.992554
3884	12	87			0.992554
3885	12		87		0.992554
3896		57		42	1.0
3949		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain