SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2274

Length: 1147 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2274

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor ser/thr protein [Oryza sativa Japonica Group] gb\|ABF95119.1\| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative Receptor-like serine/threonine kinase(RFK1)	-	-	1.109e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.712e-15	-

Source	Gene names
Sma3	AT1G07650; AT1G29720; AT1G53420; AT1G53430; AT1G53440; AT1G56145; AT3G14840; At1g16670; At1g29720; At1g29730; At1g56145; B1153E06.9; F14G9.24; F19K19.4; F1N18.20; F1N18.21; F1N18.22; F24B9.29; GSVIVT00018208001; GSVIVT00018818001; GSVIVT00021495001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09010.1	Protein kinase superfamily protein chr3:2750285-2752086 FORWARD LENGTH=393	65%
RefSeq	Arabidopsis thaliana	NP_566341.1	protein kinase domain-containing protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002305688.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: your sequence is shorter than subject: 267 - 402

Fln protein: LGSDNTRMDMNWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNILLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTSAVEEQFLLEWTWQLREENRLLEIVDPRLEEYPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVAAGTNRSSAGSHFHAFHSPQVAASHKGVSSSSATTCNSTSNVSSSCATVTQLEPRE*

Protein Length: 268

Fln nts: CTAGGTTCAGATAACACTAGAATGGATATGAATTGGACAATGAGAGCCAAAATCTGCATGGGAACTGCTCGTGGTCTTTCTTATCTTCATGAAGAACTTGTGCCTCACATTGTACACAGGGATATCAAAGCTAGTAATATACTCCTGGACAGAGATCTTAATCCAAAGATTGCAGATTTTGGTCTGGCTAAGCTTTTCCCAGATAATGTTACCCACATTAGTACACGGGTTGCTGGCACAATTGGTTATTTAGCCCCAGAGTATGCCATGCGTGGTCAGTTGACGAAGAAAGCTGACATCTACAGCTTTGGGGTACTTGTACTTGAGATAATTAGTGGCAGAAGTAACACAAAGTCAACTTCAGCAGTCGAGGAGCAATTTCTTTTGGAGTGGACATGGCAACTGAGGGAAGAGAACAGGCTACTAGAAATCGTTGATCCAAGGTTAGAGGAGTATCCGAAAGAAGAAGTATTGCGTTTCATCAAGGTTGCACTTTTGTGCACACAAGCTGCATCAAATTTCAGGCCCTCTATGTCTCAAGTAGTGGCAATGCTGTCAAAAGAGATAAATATTAATGAGAACTTACTGTCACGACCTGGCTTCATCTCAGACTTCAAAAACTTGAAAGTAGCAGCTGGCACAAATAGATCTTCAGCTGGGTCACATTTTCATGCTTTTCATAGCCCTCAAGTGGCAGCATCACACAAGGGAGTTTCATCATCTTCTGCCACGACGTGCAACTCAACAAGCAATGTTAGCAGCTCATGTGCCACTGTCACTCAGTTAGAACCCAGGGAATAG___TGAATCCGTGATTTACTTTTGTATGAAAGGATATCTAGGAAATGAAGGGGCCTTACTTTTGTATGAAAGGATACCTAGGAAATGAAGGACCTTAATAAAGCTATCTGCAAGTAGAGAAAAAATCAAAGGATATCCTTATCCACTAGCTCGTTATCCGACAAAACTGGACTAGCTTGTATGTTAATCATATTGGTCAAATTTGGAATTGGAGGTTCCATGATCAACAACTCTGGAACCTGGAGTTTCCTTTGAAAGTAGGTAATATGTAGTCATGCATGTTAATATGGCTTTGCAATGTAAGATTGAGTGGTGTGGAAATGTTTTAATTAAAAGAAAGGTTATTCTC

Fln Alignment:

Contig2274___DNTRMDMNWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNILLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTSAVEEQFLLEWTWQLREENRLLEIVDPRLEEYPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVAAGTNRXXXXXXXXXXXXPQVAASHKGVXXXXXXXXXXXXXXXXXXXXXXQLEPR
A9NWR4______________DNTRMDMDWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNVLLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTFPLEEQFLLEWTWQLREESRLLDIVDPRLEEYPKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVSAGTSRPPARTNLNAFHNAQVTAMHRGVSSSSTTTGNSTSVVSSSPATITQLEPR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
951		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain