SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2256

Length: 3772 nt

UniGene Fasta

>sp_v3.0_unigene2256
TTGCCTCTCATACTTCTCTTCTCGCGTGGAGAAAGGTCTTGCGGTCATGGTTCAGCCTCTTTTACCGATTTCCAGGCAGAAATAAGCGCTTCGAGCTCGATCCACGGCGGCCAGGGCTCCAGATTGCAAGGGAGTTGTCGTAAATGGCGTTTAAAGTCATGACCTTGGCTGTCAATCAATTTATTTTGGGACACGTATGGGGAGAAATTAACCAGGCAGGGTTACACAAGACTGAAGGCCTGTAGAAAATTGTTATTCGGCTGGACTCGAACATATAATGTGACCCCGGTGGAAACCGAGACTAAATGGGAAGTACCGGGGAGCCAGAGCGCAAGAGGCGCCATTTGAACTCCATAAGCCCTACTGTCAAGAAGCAGCCTTCCACTCCCTCCTCGGACGAAAAAAAGGTTGATGCTGCAGTTCTTCAGTATCAGAATCAGAAGCTTGCTCAGCAATTAGAAGCTCAAAGAAGTGAATTTCATGCACTAGAGAGCAAGTTCAATCAACTGAAAAACAAACAGGCTAAATATGATGACACATTGATAGTAGTTAATAGAGCTTGGAAAGAGCTGGTAGATGACTTGGAGTTGCTTTCGATACGAGCTGGGGGATGCACAAATGGAGTTAAGGTTTTGGATGTTTCTCAAACTTTGGAAGATGGGAAGGGTGGATCATGTTCTCCAGAAGAGACCTTTTTGTGTCGTATTTTAGAAGCTAGTACAATGGAAAGCAAAGTTCCAAATGCTTCTGTCAAGGATGTAGAGAATGGCCTTATGACAAGGCGTGCATCCACATTAAAAATAATGGAATATTTATTAAAGGCAATTGATGGTCAGCGAGCTAAAAATGAGGAATTGTCCTCTATTCTTTGTGAGAAGCTAGCTGAAGATGAAGTTAGCAAACAACTCCAAAATAATCATGATAACTTAAGGGAAGAGGTCAAGAATTTACGGGCTGCAACTGATGCACATCACCTGAAGCATAAGCAATATTCAAATGAGGTTCGAATTCTTCAGGACAGTCATGCAAATGATCAATCTGAGATAAAACGGTTGATGGGTGAGCTGGAGGAAACAATGGCAGAGCTAGAGGAAAGTAAATGTAAGCTTGCACGTTTGAAATCACAAAGGGATGCATCACTTGGAGCATCTTTGCCAAACTTGCATTTGGGGAATAGAAATGACTTAGACAAGTCTGGGGATAAGTCAAGAAAATTAAGAGAGGTAGAAGCCGCATTGGAAGAACTTAAGACATTAGCAGAAAATCGACTAGCCGAGCTCCAAGAAACACATCAAGAAAAGCTGAAAATTTCACAGCAGATGGATCGTATGCAGGACTCTTTAAAAGATGGGAAGCATATTATGTCATCTAGACCCTACCTTTTACTCAATGACCAACTTCAACGCCTGAAAGCTGAAGTGGACCGTTATCAGTCTGCAGTTGAGTCCTTGCAGGCTGAAAGGGATGCCCTTTTGCGTCGTGAGAAGGAAATGAACTTGAAGCTGGAATCGTCCGAGGTTTCAAAGAGGGCAGCTGCAGTTGCCGATGCTAGAATAGTTGAGCTAGAGTTGGATTTGCGAGAGTGCATGACTGAAAGAAATTTATTTGAGACAAGGCTTGAAGAGGCTTTACAGGAGTCAGGAAGGAAAGACACTATTAGTGAGTTTAAAGTCATGGTTTCAACTCTACATAAAGAGATGGGTATGATGCAAGCACATTTAACTAAATTTAAGGAGACAGCTTTTGAAGTTCATTCATTGCGGGCAGAGGTCCATTCCCTCACAACTATACTTAACAGAAAGTCAAATGAATACAAAAAACTGTCAGATAAATGTGCAGACCATGCAGCTAAAATAAAATCCTTGCAGGCTTTGGTTACGGATCTAAGAGAGACTGAACAAGAGCTAAAGTTAATTCTGGAGATGTATGGGCGGGAAACCACAGATTCCAGGGATGTCATGGAAGCAAGGCAGGCAGAATGCAAAGCTTGGGCACAGGTGCATAAGCTAAAGTCTGCCCTTGATGAGCACAGTTTGGAATTGCGGGTCAAAGCAGCCAATGAAGCTGAGGCAGTCTGCCAACAGAGACTTGCTGTTGCTGAAGCTGAGATAGCTGACACAAGGCAAAAGCTTGATGCTGCAGAGAGGGACATATTGGAGTTCACTGAGGCTCTGAAAGCTAAAAATGAAGAAGGAGAAGCCTATATAGCTGAAATTGAGACTATTGGGCAAGCATACGAAGATATGCAAACCCAAAATCAACGATTACTTCAGCAGATAACAGAGAGAGATGATTACAATATCAAGCTTGTATCGGAGAGTGTGAAGGCAAAGCAGGTTCAAAATTCTCTTCTTATGGAGAAAAAGGATATGGCAAAGCAATTGCAGCAGGCTGGTGCTTCAGCAGAGATGTATAAACAGAAGATTATGCGTCTTGAAGAACAGGTGAGAGTTCACTTGGATCAAATTGGAAAGGCTACTGAAGATGGTCAGCAGTATGCACTTACTCTGGATAGTACAAAACGAAAATTGGTAGATGTAGAGAAAGAGTCACAATCTCTTAAGGCTTGTCTTGAGGCTGTGCAAAAGGAGGCTGAACAGTGCAAACGCAGAATTACTGATCTGCAAGTGGAGTTGAAGAATGAGAGGTTCGGGAAAAAGCGAATTGAGGAAGAACTGGCCGCTTTGAACATAAAATTTACATGCCTCAGTTCCCTTAACAATGGTGAAACGGTAGTAGAAAGACTTCAAGAAGAAATCAAAGAGTACAAGGCAATTTTAAAATGCAGTGTTTGCCATGATAGGCCCAAAGAAGTTGTGATTACCAAGTGCTTCCACTTGTTTTGTGGCCCTTGTATACAACGGAACTTGGAGACCCGGCACCGCAAATGTCCAGGATGTGGTACAGGTTTTGGACAGAACGATGTGCGGACTGTATACATATGATTTAGATGGTCAATATGATCTGGTTTTCGAACAAGAGAGAACAATGTAGAGGTTTAAGAGTAAAGTTGGAGTTTACAACCAGATTTTGTTGGTAAAGATGTACCCAAAAATAATTCATTGGGTAGAGCAGGTCCGAGGACATACTTTTGTGTTTTCGACCATCTCCTGTTGAAAGTCATGTAAAATACTAACTGAAAACAGTGATTCATGGTTTACTGTAACCTTCCCCCATTTTAGGAGGGTTTTGTTTTACTGCTAGGTTTTTTTTCTTCCTGACATGCCAAGAACTGGTGTAAATACCATCCATCCTTCAAAGTAAAATCATGGAATTGTAGGTGCAATGTCTTTCGGGTTTCAACATTAGAGTTGTTGGGGTGGATTTGCTTGCTCTGTGTATTATGTCTGTAACTGACTGCATATTTAACAAATCAATCAAACCAGTTGACGAGATTAAGATAAAATATTGGTCAGGCCATTGCTTATATCAGAGTGGTGCCTTATCCCAAAGGTGTCAGTCATGCCCCTTGGAGGCTTCAAGGGAAGATCACCCGGAGCTCTTATATTTTCAGAAAAAAATGGTGTATACTTTATGATATAATGGTGACTTGTGAGAAGAAAGTATGGAGTTTGTCATGTTGTTGCAGAGAATAGCAGTGTTACAGACACACATCTTGAGTTGTTGGATCACAGATATTTGGAAGCTCACACATTAGGGAATTGGTATTGCGATCATAGGCCTTTCTTCACAGATCATCATTGTAGGGGCTCAGGAATCAGGATACACATAATTATTTCTATGGCTATTGTCTTGCTCAAAATTTCTCCGT

Ace file of the UniGene sp_v3.0_unigene2256

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp\|Q8RXD6.1\|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb\|AAL91211.1\| unknown protein [Ar	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Sma3	Histone ubiquitination proteins group	-	-	1.003e-08	-

Source	Gene names
Sma3	At1g55250/At1g55255; At1g55255; BRE1A; BRE1B; F7A10.17; GSVIVT00019139001; GSVIVT00024749001; HUB2; HUPA901; HUPA902; OsI_16895; OsI_34687; OsJ_15692; OsJ_32496; PHYPADRAFT_115788; PHYPADRAFT_144430; PHYPADRAFT_152947; PHYPADRAFT_208452; PHYPADRAFT_222810

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein of unknown function DUF716, TMEM45	IPR006904	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55250.1	HUB2 histone mono-ubiquitination 2 chr1:20607214-20612302 FORWARD LENGTH=900	45%
RefSeq	Arabidopsis thaliana	NP_564680.4	E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002302510.1	histone ubiquitination proteins group [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABH9

Fln msg: your sequence is longer than subject: 880 - 205

Fln protein: MGSTGEPERKRRHLNSISPTVKKQPSTPSSDEKKVDAAVLQYQNQKLAQQLEAQRSEFHALESKFNQLKNKQAKYDDTLIVVNRAWKELVDDLELLSIRAGGCTNGVKVLDVSQTLEDGKGGSCSPEETFLCRILEASTMESKVPNASVKDVENGLMTRRASTLKIMEYLLKAIDGQRAKNEELSSILCEKLAEDEVSKQLQNNHDNLREEVKNLRAATDAHHLKHKQYSNEVRILQDSHANDQSEIKRLMGELEETMAELEESKCKLARLKSQRDASLGASLPNLHLGNRNDLDKSGDKSRKLREVEAALEELKTLAENRLAELQETHQEKLKISQQMDRMQDSLKDGKHIMSSRPYLLLNDQLQRLKAEVDRYQSAVESLQAERDALLRREKEMNLKLESSEVSKRAAAVADARIVELELDLRECMTERNLFETRLEEALQESGRKDTISEFKVMVSTLHKEMGMMQAHLTKFKETAFEVHSLRAEVHSLTTILNRKSNEYKKLSDKCADHAAKIKSLQALVTDLRETEQELKLILEMYGRETTDSRDVMEARQAECKAWAQVHKLKSALDEHSLELRVKAANEAEAVCQQRLAVAEAEIADTRQKLDAAERDILEFTEALKAKNEEGEAYIAEIETIGQAYEDMQTQNQRLLQQITERDDYNIKLVSESVKAKQVQNSLLMEKKDMAKQLQQAGASAEMYKQKIMRLEEQVRVHLDQIGKATEDGQQYALTLDSTKRKLVDVEKESQSLKACLEAVQKEAEQCKRRITDLQVELKNERFGKKRIEEELAALNIKFTCLSSLNNGETVVERLQEEIKEYKAILKCSVCHDRPKEVVITKCFHLFCGPCIQRNLETRHRKCPGCGTGFGQNDVRTVYI*

Protein Length: 881

Fln nts: TTGCCTCTCATACTTCTCTTCTCGCGTGGAGAAAGGTCTTGCGGTCATGGTTCAGCCTCTTTTACCGATTTCCAGGCAGAAATAAGCGCTTCGAGCTCGATCCACGGCGGCCAGGGCTCCAGATTGCAAGGGAGTTGTCGTAAATGGCGTTTAAAGTCATGACCTTGGCTGTCAATCAATTTATTTTGGGACACGTATGGGGAGAAATTAACCAGGCAGGGTTACACAAGACTGAAGGCCTGTAGAAAATTGTTATTCGGCTGGACTCGAACATATAATGTGACCCCGGTGGAAACCGAGACTAA_-_ATGGGAAGTACCGGGGAGCCAGAGCGCAAGAGGCGCCATTTGAACTCCATAAGCCCTACTGTCAAGAAGCAGCCTTCCACTCCCTCCTCGGACGAAAAAAAGGTTGATGCTGCAGTTCTTCAGTATCAGAATCAGAAGCTTGCTCAGCAATTAGAAGCTCAAAGAAGTGAATTTCATGCACTAGAGAGCAAGTTCAATCAACTGAAAAACAAACAGGCTAAATATGATGACACATTGATAGTAGTTAATAGAGCTTGGAAAGAGCTGGTAGATGACTTGGAGTTGCTTTCGATACGAGCTGGGGGATGCACAAATGGAGTTAAGGTTTTGGATGTTTCTCAAACTTTGGAAGATGGGAAGGGTGGATCATGTTCTCCAGAAGAGACCTTTTTGTGTCGTATTTTAGAAGCTAGTACAATGGAAAGCAAAGTTCCAAATGCTTCTGTCAAGGATGTAGAGAATGGCCTTATGACAAGGCGTGCATCCACATTAAAAATAATGGAATATTTATTAAAGGCAATTGATGGTCAGCGAGCTAAAAATGAGGAATTGTCCTCTATTCTTTGTGAGAAGCTAGCTGAAGATGAAGTTAGCAAACAACTCCAAAATAATCATGATAACTTAAGGGAAGAGGTCAAGAATTTACGGGCTGCAACTGATGCACATCACCTGAAGCATAAGCAATATTCAAATGAGGTTCGAATTCTTCAGGACAGTCATGCAAATGATCAATCTGAGATAAAACGGTTGATGGGTGAGCTGGAGGAAACAATGGCAGAGCTAGAGGAAAGTAAATGTAAGCTTGCACGTTTGAAATCACAAAGGGATGCATCACTTGGAGCATCTTTGCCAAACTTGCATTTGGGGAATAGAAATGACTTAGACAAGTCTGGGGATAAGTCAAGAAAATTAAGAGAGGTAGAAGCCGCATTGGAAGAACTTAAGACATTAGCAGAAAATCGACTAGCCGAGCTCCAAGAAACACATCAAGAAAAGCTGAAAATTTCACAGCAGATGGATCGTATGCAGGACTCTTTAAAAGATGGGAAGCATATTATGTCATCTAGACCCTACCTTTTACTCAATGACCAACTTCAACGCCTGAAAGCTGAAGTGGACCGTTATCAGTCTGCAGTTGAGTCCTTGCAGGCTGAAAGGGATGCCCTTTTGCGTCGTGAGAAGGAAATGAACTTGAAGCTGGAATCGTCCGAGGTTTCAAAGAGGGCAGCTGCAGTTGCCGATGCTAGAATAGTTGAGCTAGAGTTGGATTTGCGAGAGTGCATGACTGAAAGAAATTTATTTGAGACAAGGCTTGAAGAGGCTTTACAGGAGTCAGGAAGGAAAGACACTATTAGTGAGTTTAAAGTCATGGTTTCAACTCTACATAAAGAGATGGGTATGATGCAAGCACATTTAACTAAATTTAAGGAGACAGCTTTTGAAGTTCATTCATTGCGGGCAGAGGTCCATTCCCTCACAACTATACTTAACAGAAAGTCAAATGAATACAAAAAACTGTCAGATAAATGTGCAGACCATGCAGCTAAAATAAAATCCTTGCAGGCTTTGGTTACGGATCTAAGAGAGACTGAACAAGAGCTAAAGTTAATTCTGGAGATGTATGGGCGGGAAACCACAGATTCCAGGGATGTCATGGAAGCAAGGCAGGCAGAATGCAAAGCTTGGGCACAGGTGCATAAGCTAAAGTCTGCCCTTGATGAGCACAGTTTGGAATTGCGGGTCAAAGCAGCCAATGAAGCTGAGGCAGTCTGCCAACAGAGACTTGCTGTTGCTGAAGCTGAGATAGCTGACACAAGGCAAAAGCTTGATGCTGCAGAGAGGGACATATTGGAGTTCACTGAGGCTCTGAAAGCTAAAAATGAAGAAGGAGAAGCCTATATAGCTGAAATTGAGACTATTGGGCAAGCATACGAAGATATGCAAACCCAAAATCAACGATTACTTCAGCAGATAACAGAGAGAGATGATTACAATATCAAGCTTGTATCGGAGAGTGTGAAGGCAAAGCAGGTTCAAAATTCTCTTCTTATGGAGAAAAAGGATATGGCAAAGCAATTGCAGCAGGCTGGTGCTTCAGCAGAGATGTATAAACAGAAGATTATGCGTCTTGAAGAACAGGTGAGAGTTCACTTGGATCAAATTGGAAAGGCTACTGAAGATGGTCAGCAGTATGCACTTACTCTGGATAGTACAAAACGAAAATTGGTAGATGTAGAGAAAGAGTCACAATCTCTTAAGGCTTGTCTTGAGGCTGTGCAAAAGGAGGCTGAACAGTGCAAACGCAGAATTACTGATCTGCAAGTGGAGTTGAAGAATGAGAGGTTCGGGAAAAAGCGAATTGAGGAAGAACTGGCCGCTTTGAACATAAAATTTACATGCCTCAGTTCCCTTAACAATGGTGAAACGGTAGTAGAAAGACTTCAAGAAGAAATCAAAGAGTACAAGGCAATTTTAAAATGCAGTGTTTGCCATGATAGGCCCAAAGAAGTTGTGATTACCAAGTGCTTCCACTTGTTTTGTGGCCCTTGTATACAACGGAACTTGGAGACCCGGCACCGCAAATGTCCAGGATGTGGTACAGGTTTTGGACAGAACGATGTGCGGACTGTATACATATGA___TTTAGATGGTCAATATGATCTGGTTTTCGAACAAGAGAGAACAATGTAGAGGTTTAAGAGTAAAGTTGGAGTTTACAACCAGATTTTGTTGGTAAAGATGTACCCAAAAATAATTCATTGGGTAGAGCAGGTCCGAGGACATACTTTTGTGTTTTCGACCATCTCCTGTTGAAAGTCATGTAAAATACTAACTGAAAACAGTGATTCATGGTTTACTGTAACCTTCCCCCATTTTAGGAGGGTTTTGTTTTACTGCTAGGTTTTTTTTCTTCCTGACATGCCAAGAACTGGTGTAAATACCATCCATCCTTCAAAGTAAAATCATGGAATTGTAGGTGCAATGTCTTTCGGGTTTCAACATTAGAGTTGTTGGGGTGGATTTGCTTGCTCTGTGTATTATGTCTGTAACTGACTGCATATTTAACAAATCAATCAAACCAGTTGACGAGATTAAGATAAAATATTGGTCAGGCCATTGCTTATATCAGAGTGGTGCCTTATCCCAAAGGTGTCAGTCATGCCCCTTGGAGGCTTCAAGGGAAGATCACCCGGAGCTCTTATATTTTCAGAAAAAAATGGTGTATACTTTATGATATAATGGTGACTTGTGAGAAGAAAGTATGGAGTTTGTCATGTTGTTGCAGAGAATAGCAGTGTTACAGACACACATCTTGAGTTGTTGGATCACAGATATTTGGAAGCTCACACATTAGGGAATTGGTATTGCGATCATAGGCCTTTCTTCACAGATCATCATTGTAGGGGCTCAGGAATCAGGATACACATAATTATTTCTATGGCTATTGTCTTGCTCAAAATTTCTCCGT

Fln Alignment:

Contig2256___LQEEIKEYKAILKCSVCHDRPKEVVITKCFHLFCGPCIQRNLETRHRKCPGCGTGFGQNDVRTVYI
D5ABH9______________LSTGVKEIK--LSCAICMDKMKEETTTICGHVFCKKCIVRAIEV-YKQCPSCRKKLTMKSIHRIYI

SNPs (tot: 3)

Position	A %	C %	T %	Probability
2608		66	33	0.997452
2662	33	66		0.997452
3404		33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain