SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2242

Length: 1767 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2242

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase [Vitis pseudoreticulata]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Betaine aldehyde dehydrogenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	5.197e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		5.197e-18	%
Sma3	Pentose and glucuronate interconversions	00040		5.197e-18	%
Sma3	Ascorbate and aldarate metabolism	00053		5.197e-18	%
Sma3	Fatty acid metabolism	00071		5.197e-18	%
Sma3	Valine, leucine and isoleucine degradation	00280		5.197e-18	%
Sma3	Lysine degradation	00310		5.197e-18	%
Sma3	Arginine and proline metabolism	00330		5.197e-18	%
Sma3	Histidine metabolism	00340		5.197e-18	%
Sma3	Tryptophan metabolism	00380		5.197e-18	%
Sma3	beta-Alanine metabolism	00410		5.197e-18	%
Sma3	Glycerolipid metabolism	00561		5.197e-18	%
Sma3	Pyruvate metabolism	00620		5.197e-18	%
Sma3	Chloroalkane and chloroalkene degradation	00625		5.197e-18	%
Sma3	Propanoate metabolism	00640		5.197e-18	%
Sma3	Limonene and pinene degradation	00903		5.197e-18	%
Sma3	Metabolic pathways	01100		5.197e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		5.197e-18	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	1.256e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		1.256e-16	%
Sma3	Metabolic pathways	01100		1.256e-16	%
Sma3	Betaine-aldehyde dehydrogenase.	EC:1.2.1.8	-	4.113e-22	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260		4.113e-22	%

Source	Gene names
Sma3	ALD1; ALDH; ALDH10A9; ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2C4; ALDH2a; ALDH2b; ALDH3; ALDH5F1; Aldh; Aldh 2A; Aldh1; Aldh2a; Aldh2b; At1g23800; At1g79440; At3g24503; At3g48000; At3g48170; BADH; BADH1; BADH2; BADH4; BBD1; Badh2; BvBADH1; C

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	succinate-semialdehyde dehydrogenase activity	GO:0004777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	betaine-aldehyde dehydrogenase activity	GO:0008802	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	GO:0016620	Molecular Function	-
Sma3	aminobutyraldehyde dehydrogenase activity	GO:0019145	Molecular Function	-
Sma3	coniferyl-aldehyde dehydrogenase activity	GO:0050269	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glutamate decarboxylation to succinate	GO:0006540	Biological Process	-
Sma3	oxygen and reactive oxygen species metabolic process	GO:0006800	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	gamma-aminobutyric acid catabolic process	GO:0009450	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23800.1	ALDH2B7, ALDH2B aldehyde dehydrogenase 2B7 chr1:8412238-8414804 REVERSE LENGTH=534	79%
RefSeq	Arabidopsis thaliana	NP_564204.1	aldehyde dehydrogenase 2B7 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002301540.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg: your sequence is shorter than subject: 462 - 544

Fln protein: LDPRTGDLIVDVAEGDAEDVDRAVKAARKAFDEGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQAALVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHCQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNVISGYGPTAGAAVARHMDIDKVAFTGSTATGQAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKVMGYIKSGRESGAKLVTGGDQIGTKGFYIMPTIFSEVKDDMTIATDEIFGPVQSIIKFKTLDEVIKRANATRYGLAAGVFTKNLETANSLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLNNYLQVKAVVSPLKNPAWL*

Protein Length: 463

Fln nts: TTGGATCCCAGAACAGGGGATTTGATTGTCGATGTGGCTGAAGGTGATGCAGAAGACGTGGACAGGGCTGTAAAGGCTGCACGAAAAGCCTTTGACGAGGGCCCATGGCCGAAAATGACTGCTTATGAGAGATCATGTATTATGCTCCGGTTCGCTGACTTGCTTGAAAAGCATAACGACGAGATTGCAGCCTTGGAGACATGGGACAATGGGAAGCCTTATGAGCAAGCAGCCTTGGTTGAAGTGCCAATGGCAGTGCGGCTATTTCGTTACTATGCAGGGTGGGCAGATAAAATACATGGCCTTACAGTTCCAGCTGATGGACCTTATCATTGTCAAACATTACATGAGCCTATTGGAGTTGCAGGTCAAATCATCCCTTGGAATTTTCCACTACTTATGTTTGCTTGGAAAGTTGGTCCTGCACTAGCTTGTGGGAACAGTATTGTATTAAAGAGTGCTGAGCAGACACCTTTAACAGCTCTTTATGCAGCAAAACTTTTCCACGAGGCTGGACTGCCTCCAGGAGTTCTGAATGTCATTTCAGGATATGGTCCAACTGCGGGAGCTGCAGTTGCAAGACACATGGATATTGATAAGGTTGCTTTTACAGGTTCAACTGCTACTGGTCAAGCAGTGCTAGAGTTAGCTTCCAAGAGCAACCTTAAGCCAGTGACATTGGAACTTGGAGGAAAGTCCCCTTTTATTGTATGCGAAGATGCTGATGTTGATCAAGCCGTGGAGCTCGCTCACTTTGCATTATTTTTCAATCAGGGTCAATGCTGCTGTGCTGGGTCACGAACCTTTGTACATGAGAGTATCCATGATGAGTTTGTAGAAAAAGCAAAAGCACGGTGTTTAAGTCGGGTTGTCGGTGATCCTTTTAGAAAAGGTGTTGAGCAGGGTCCTCAGATTGACCAGGAACAGTTTAACAAGGTTATGGGTTATATCAAGTCTGGGAGGGAGAGTGGTGCAAAACTTGTAACAGGGGGAGACCAAATTGGTACCAAGGGCTTCTATATTATGCCTACCATCTTCTCAGAAGTCAAGGATGACATGACCATAGCTACTGACGAAATATTTGGTCCAGTACAGTCAATTATAAAATTCAAAACTTTAGACGAAGTAATAAAGCGGGCGAATGCTACTCGTTATGGCTTGGCAGCAGGAGTGTTTACAAAGAATCTAGAGACCGCGAACTCTCTTACTCGGGCATTACGTGTCGGAACAGTTTGGGTTAACTGCTTTGACATTTTTGATGCTGGTATACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGAGAGAAGGGTATCTACAGTCTCAATAACTACTTACAGGTTAAAGCTGTTGTCTCGCCTTTGAAGAATCCAGCCTGGTTGTAG___GCTGTTAGTTCCTACAAATGGTTCAATTGTGTGGGGAACATCCAGCCTGGTTGTAGGCTGTTAGTTCCTACAAATGGTTCAATTGTGTGGGGAACATATTCAGTTCCTGATGGTCTTGTCAAGTCAGTCTAATTTGAATTTAGCTTTCTCTGTCAATAATTAATGTATATGACCTTCAGATAGTTGTGATGCTCTTGTTTTCCTGTGAACCTGCACAGTTGTGTCTCTGTAAGATTCTGTAGTTTCAGAATTTGGAACTCAATTATCATGGCCATTTCAAATGCGAAATGAAGGGTGTCATTGTTTCTGCCATGTTTTATGCTTCTTGTTTTTCTGTGAAGGTGCATAGTCATGTTTCTGCAAGACTCTGTAGATTCAGAA

Fln Alignment:

Contig2242___DPRTGDLIXXXXXXXXXXXXXXXKAARKAFDEGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQAALVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHCQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNVISGYGPTAGAAVARHMDIDKVAFTGSTATGQAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKVMGYIKSGRESGAKLVTGGDQIGTKGFYIMPTIFSEVKDDMTIATDEIFGPVQSIIKFKTLDEVIKRANATRYGLAAGVFTKNLETANSLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLNNYLQVKAVVSPLKNPAWL
A9NUF6______________DPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1220	33		66		0.997452
1672		80		20	0.995493
1673		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain