SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2225

Length: 2478 nt

UniGene Fasta

>sp_v3.0_unigene2225
TGCTTAAGCAGTGGTATCAACGAAGAGGAAGCAAAACGGGGTCTAGATTGCCCTTCAACCCTTGAATTTTCCATCAATTTTGTGCATCGAAGCGGTTTTTCGCAGTTCCGGATTCGCAATTTCGATTACAACAATGGCTGTTTCCTGGAAGGCTTTTCATACTGTGGTTGTAGACCATTCATTTCACCGGGTGAGGAAAGATGATGCACCGTACCTTGGGGGCTGTTCTGCTCCTAATGCTAGTAAATTGTTTTCACTGCAAGAGACAAAGTTGACATGGACTGGCAAACCAGCCATGTGGCCAGTCTATTTGCAAAAACGTCAAAACCAAGCAAGGGTATTTTGCAGTGCTGCCGTGTCTTCTGGTACAGTCTCAGCATTAGAGAAAATAGATTTCAAAAAACTTCAGAACGGAAGTGACATTCGTGGGGTTGCAGTCGCTGGTGTTGAGGGAGAGCCAGTGAACCTTACAGAGACTGTAACAGAGGCAATTGCTGCAGGTTTTGTAGGATGGCTTTTGGAGAAGAAGAAAGCAGACGGATCAAGACGTTTGAGAGTTTCAGTTGGTCATGATTCCAGGATATCAGCAGACTCTCTTCAGGCTGCTGTAGCTCGTGGCATTGCTGGGGCTGGCTTGGATGTTATTCTATATGGGTTGGCATCTACTCCAGCAATGTTTAACAGTACACTTACTAAGGATGAAGATTCTCTTTGCCCTGTTGATGGCTCCATTATGATCACAGCTAGCCATCTTCCATACAACCGCAATGGGTTTAAATTTTTTACAAGTTCTGGCGGGCTTGGCAAAGCGGATATTACAGACATTCTGTCACGTGCGGCACAAATATACAATAATTTTTCTGAAGATATATTGAATGCATCCAAACAAGCTGCTTCTAATTTGTTGAGAAGGGTGGATTACATGAATGTTTACACATCAGATCTAGTAAAGGCTGTTCGTAAAGCAGCTGGAAATATGGAGAGACCACTTGAAGGATTCCATATCGTTGTAGATGCAGGAAATGGTGCAGGAGGATTCTTCCCGGGAAGTGTTCTTGATCCATTAGGAGCTGTTACTTCAGGAAGCCAATTTTTAGAACCAGATGGCATGTTTCCTAATCACATCCCAAACCCAGAGGATAAATCAGCAATGGCAGCAATCACCAAAGCTGTCCGTGATCATAAGGCTGATCTAGGAATCATATTTGATACTGATGTTGATCGGTCTGCCGCTGTTGATTCAACTGGTCGTGAGTTTAATCGCAACCGTTTGATTGCTCTGATGTCAGCCATCGTTCTAGAAGAACATCCAGGGACAACAATTGTGACCGACAGTGTAACATCAGATGGGTTGACCGCCTTCATAGAAAATAAGCTAGGAGGAAAGCATCACCGTTTTAAGAGAGGATATAAAAATGTCATTGATGAAGCTATTCGCTTGAACTCAATTGGAGAAGAATCACATCTAGCCATAGAGACTAGTGGTCATGGTGCCCTCAAGGAAAATCATTGGCTTGATGATGGAGCATATCTCATGGTTAAGCTTCTGAACAAACTTGCTGCATCCAAAGCTACAGGAGAAAGCCTTGGCAGTTCAGTTCTTACCAAATTGATAGAAGGATTGGAGGAAGCGGAAGTCGCAGTTGAATTGAGACTTAAAATTGATCAAAACCATGATGAAATTATTGGGGGAACATTCCGTGATTATGGTGAGGCGGTGCTTAAACATTTGGAAAATGTTGCAGATTTAGATCCTAACTTGCAGAAGGCACCTGTCAATTACGAAGGGGTTAGAGTATCCGCCTATGGAGGCTGGTTCCTTCTGAGACTCTCTCTTCATGATCCTGTTCTCCCCCTAAATATCGAGGCACCAACTAAAGAGGCTGCTTCGAAGCTTGCATTGGCTGTGTTATCTGCTGTGAAGGAGTTTAATGCACTGGACTTTTCAGCACTGCAGAAGTTAACTGATAGTGTGTAATTAGGTCAAATCAATGGTATATTTCATAAAGTATCATGCGTATATCCATACCGGAAGTTATGGATGATAGTAACGTTAGTTGAATTGATGTCATTGAGTTTTGTTTTCCCAGAATTGCCATTCCTTTTGTTGATGGTGCTTTTTATATATATAATCAACATTTCAATCAAATGTTTGTAAGAAGTTCTAGTAAAGAAGAAAATGTGCTGTTTTTTAATCCGTCATCAGCAAGCAAGTTGGAGAATCAACGAAAATCTGAAAAATAAACATAGGTCTCATTTTGTATTAATACACTTACCAATGATAGTGATATGTAAAAGCAACTTTTGATTTATTGGATATCCAGCATATCAAAGGGGATTGAGGGTAATCTCATAAATTCTAAAATTGTACATAATAGCAGTCATTATTAGTGTGGGATGAAAGCAACTTGTAAAAATGAACTGTTGATTTTCCTTTAAGAGACATACATTGCAAAGGGGATGTGAATATCCTCTCTC

Ace file of the UniGene sp_v3.0_unigene2225

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoglucosamine mutase family protein [Arabidopsis thaliana] ref\|NP_850839.1\| phosphoglucosamine mutase family protein [Arabidopsis thaliana] gb\|AAL31254.1\| AT5g17530/K10A8_10 [Arabidopsis thaliana] gb\|AAM91053.1\| AT5g17530/K10A8_10 [Arabidopsis thalia	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphomannomutase.	EC:5.4.2.8	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Fructose and mannose metabolism	00051	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	RCOM_0026140;

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase superfamily	IPR005841	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17530.3	-	75%
RefSeq	Arabidopsis thaliana	NP_850839.1	phosphoglucosamine mutase family protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002311090.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TM87

Fln msg:

Fln protein: MAVSWKAFHTVVVDHSFHRVRKDDAPYLGGCSAPNASKLFSLQETKLTWTGKPAMWPVYLQKRQNQARVFCSAAVSSGTVSALEKIDFKKLQNGSDIRGVAVAGVEGEPVNLTETVTEAIAAGFVGWLLEKKKADGSRRLRVSVGHDSRISADSLQAAVARGIAGAGLDVILYGLASTPAMFNSTLTKDEDSLCPVDGSIMITASHLPYNRNGFKFFTSSGGLGKADITDILSRAAQIYNNFSEDILNASKQAASNLLRRVDYMNVYTSDLVKAVRKAAGNMERPLEGFHIVVDAGNGAGGFFPGSVLDPLGAVTSGSQFLEPDGMFPNHIPNPEDKSAMAAITKAVRDHKADLGIIFDTDVDRSAAVDSTGREFNRNRLIALMSAIVLEEHPGTTIVTDSVTSDGLTAFIENKLGGKHHRFKRGYKNVIDEAIRLNSIGEESHLAIETSGHGALKENHWLDDGAYLMVKLLNKLAASKATGESLGSSVLTKLIEGLEEAEVAVELRLKIDQNHDEIIGGTFRDYGEAVLKHLENVADLDPNLQKAPVNYEGVRVSAYGGWFLLRLSLHDPVLPLNIEAPTKEAASKLALAVLSAVKEFNALDFSALQKLTDSV*

Protein Length: 616

Fln nts: TGCTTAAGCAGTGGTATCAACGAAGAGGAAGCAAAACGGGGTCTAGATTGCCCTTCAACCCTTGAATTTTCCATCAATTTTGTGCATCGAAGCGGTTTTTCGCAGTTCCGGATTCGCAATTTCGATTACAACA_-_ATGGCTGTTTCCTGGAAGGCTTTTCATACTGTGGTTGTAGACCATTCATTTCACCGGGTGAGGAAAGATGATGCACCGTACCTTGGGGGCTGTTCTGCTCCTAATGCTAGTAAATTGTTTTCACTGCAAGAGACAAAGTTGACATGGACTGGCAAACCAGCCATGTGGCCAGTCTATTTGCAAAAACGTCAAAACCAAGCAAGGGTATTTTGCAGTGCTGCCGTGTCTTCTGGTACAGTCTCAGCATTAGAGAAAATAGATTTCAAAAAACTTCAGAACGGAAGTGACATTCGTGGGGTTGCAGTCGCTGGTGTTGAGGGAGAGCCAGTGAACCTTACAGAGACTGTAACAGAGGCAATTGCTGCAGGTTTTGTAGGATGGCTTTTGGAGAAGAAGAAAGCAGACGGATCAAGACGTTTGAGAGTTTCAGTTGGTCATGATTCCAGGATATCAGCAGACTCTCTTCAGGCTGCTGTAGCTCGTGGCATTGCTGGGGCTGGCTTGGATGTTATTCTATATGGGTTGGCATCTACTCCAGCAATGTTTAACAGTACACTTACTAAGGATGAAGATTCTCTTTGCCCTGTTGATGGCTCCATTATGATCACAGCTAGCCATCTTCCATACAACCGCAATGGGTTTAAATTTTTTACAAGTTCTGGCGGGCTTGGCAAAGCGGATATTACAGACATTCTGTCACGTGCGGCACAAATATACAATAATTTTTCTGAAGATATATTGAATGCATCCAAACAAGCTGCTTCTAATTTGTTGAGAAGGGTGGATTACATGAATGTTTACACATCAGATCTAGTAAAGGCTGTTCGTAAAGCAGCTGGAAATATGGAGAGACCACTTGAAGGATTCCATATCGTTGTAGATGCAGGAAATGGTGCAGGAGGATTCTTCCCGGGAAGTGTTCTTGATCCATTAGGAGCTGTTACTTCAGGAAGCCAATTTTTAGAACCAGATGGCATGTTTCCTAATCACATCCCAAACCCAGAGGATAAATCAGCAATGGCAGCAATCACCAAAGCTGTCCGTGATCATAAGGCTGATCTAGGAATCATATTTGATACTGATGTTGATCGGTCTGCCGCTGTTGATTCAACTGGTCGTGAGTTTAATCGCAACCGTTTGATTGCTCTGATGTCAGCCATCGTTCTAGAAGAACATCCAGGGACAACAATTGTGACCGACAGTGTAACATCAGATGGGTTGACCGCCTTCATAGAAAATAAGCTAGGAGGAAAGCATCACCGTTTTAAGAGAGGATATAAAAATGTCATTGATGAAGCTATTCGCTTGAACTCAATTGGAGAAGAATCACATCTAGCCATAGAGACTAGTGGTCATGGTGCCCTCAAGGAAAATCATTGGCTTGATGATGGAGCATATCTCATGGTTAAGCTTCTGAACAAACTTGCTGCATCCAAAGCTACAGGAGAAAGCCTTGGCAGTTCAGTTCTTACCAAATTGATAGAAGGATTGGAGGAAGCGGAAGTCGCAGTTGAATTGAGACTTAAAATTGATCAAAACCATGATGAAATTATTGGGGGAACATTCCGTGATTATGGTGAGGCGGTGCTTAAACATTTGGAAAATGTTGCAGATTTAGATCCTAACTTGCAGAAGGCACCTGTCAATTACGAAGGGGTTAGAGTATCCGCCTATGGAGGCTGGTTCCTTCTGAGACTCTCTCTTCATGATCCTGTTCTCCCCCTAAATATCGAGGCACCAACTAAAGAGGCTGCTTCGAAGCTTGCATTGGCTGTGTTATCTGCTGTGAAGGAGTTTAATGCACTGGACTTTTCAGCACTGCAGAAGTTAACTGATAGTGTGTAA___TTAGGTCAAATCAATGGTATATTTCATAAAGTATCATGCGTATATCCATACCGGAAGTTATGGATGATAGTAACGTTAGTTGAATTGATGTCATTGAGTTTTGTTTTCCCAGAATTGCCATTCCTTTTGTTGATGGTGCTTTTTATATATATAATCAACATTTCAATCAAATGTTTGTAAGAAGTTCTAGTAAAGAAGAAAATGTGCTGTTTTTTAATCCGTCATCAGCAAGCAAGTTGGAGAATCAACGAAAATCTGAAAAATAAACATAGGTCTCATTTTGTATTAATACACTTACCAATGATAGTGATATGTAAAAGCAACTTTTGATTTATTGGATATCCAGCATATCAAAGGGGATTGAGGGTAATCTCATAAATTCTAAAATTGTACATAATAGCAGTCATTATTAGTGTGGGATGAAAGCAACTTGTAAAAATGAACTGTTGATTTTCCTTTAAGAGACATACATTGCAAAGGGGATGTGAATATCCTCTCTC

Fln Alignment:

Contig2225___AVSWKAFHTVVVDHSFHRVRKDDAPYLGGCSAPNASKLFSLQETKLTWTGKPAMWPVYLQKRQ----NQARVFCSAAVSSGTVSALEKIDFKKLQNGSDIRXXXXXXXXXXPVNLTETVTEAIAAGFVGWLLEKKKADGSRRLRVSVGHDSRISADSLQAAVARGIAGAGLDVILYGLASTPAMFNSTLTKDEDSLCPVDGSIMITASHLPYNRNGFKFFTSSGGLGKADITDILSRAAQIYNNFSEDILNASKQAASNLLRRVDYMNVYTSDLVKAVRKAAGNMERPLEGFHIVVDAGNGAGGFFPGSVLDPLGAVTSGSQFLEPDGMFPNHIPNPEDKSAMAAITKAVRDHKADLGIIFDTDVDRSAAVDSTGREFNRNRLIALMSAIVLEEHPGTTIVTDSVTSDGLTAFIENKLGGKHHRFKRGYKNVIDEAIRLNSIGEESHLAIETSGHGALKENHWLDDGAYLMVKLLNKLAASKATGESLGSSVLTKLIEGXXXXXXXXXXRLKIDQNHDEIIGGTFRDYGEAVLKHLENVADLDPNLQKAPVNYEGVRVSAYGGWFLLRLSLHDPVLPLNIEAPTXXXXXXXXXXXXXXXXXFNALDFSALQKLTDS
D7TM87______________AVSGKIVQNIFVAQCCHQNRQFGAQYQRDRCAPNLRSLLPFQGRKLAWTGISSMHLRNLSKYQSGFVNQGNVYCNAAPSSTSLPSLEKVDFLKLQNGSDIRGVAVAGVEGEPVTLTEPVTEAIAAAFGAWLLEKKKADGSRRLRVSIGHDSRISAQKLQEAVSLGIASAGLEVVQYGLASTPAMFNSTLTEGEQFLCPADGSIMITASHLPYNRNGFKFFTNAGGLGKADIKDILERAASIYSNFAVEGLVNSERKASVSIKRVDYMALYTSYLVEAVRRAAGNIERPLEGLHIVVDAGNGAGGFFAEKVLEPLGAITTGSQFLEPDGLFPNHIPNPEDKEAMKAITQAVLANQADLGIIFDTDVDRSAAVDSTGRELNRNRLIALMSAIVLEKHPGTTIVTDSVTSDGLTTFIEKKLGGKHHRFKRGYKNVIDEAIRLNSVGEESHLAIETSGHGALKENHWLDDGAYLMVKLLNKLASARASGIGGGSEVLTDLVEGLQEPAAAVELRLKIDKSHEDLKGGSFREYGEAVLKLLENLTDSDPKLQKAPVNYEGVRASGFGGWFLLRLSLHDPVLPLNIEAPSHDDAVKLGLAVLTVVKEFPALDSSALDKFVQS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
521		12		87	0.999964
541		37		62	1.0
636			81	18	1.0
1012		22		72	1.0
1294		86		13	0.999973
1419	87	12			0.992554
1422	11			22	0.999999
1495	12		87		0.992554
1496		12	87		0.992554
1498			87	12	0.992554
1611	12	87			0.992554
1616			11	88	0.923564
1638	10		90		0.90298
2136	72			27	1.0
2149	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain