SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2222

Length: 2802 nt

UniGene Fasta

>sp_v3.0_unigene2222
ATACATGCCATGTCCACATTCGAATACAAACATGGCGATTATGATAAAAAGAATTGATACCACCACAAAATGATGTAAACTACGGGTTCTCAGTGGATAGCATTCACAGCCTCCTGTAATGTCTTTAACACGCACCTCTCACGTCCCCAGATGCTTTTCCTTCTGAGTTGAAGGGCAGGGATGGCAATTAATGTTGTTAATGCTGCTATCACGACACTACTTCCTCCAAGTCATCCGCAACAGCCCCAGTTTTGCTGCTATGGTAGGATAAAAGTTTATCCCTCATCATTCCAGAAGACTGCTGTGGAAAAAATATTTTCAGAGGAAGAGAGGTTATTTTTTCCTCCTGATCACAAACGAAATCATGGACTTTGCTTCCGAATGCAGGCAGTGAGATCAGACCATCTGAATGCTGTGAGAGATCCTGACCTACATGCAGCAAAATCTGTTGAAATTCAAACTGTATCAGAGAAAACAGTAATTGGAGAGGGTGGCTTTTCACAAGATGTGGCTATTCCTTCACAGCATTTTGAAAACCAGGTGCATGTTGGAAATCAGTTGACAAAAACTGGATCTTCATTGGAAGATTTGAGAGATCTATATTCTCCAAATGACATGAATTTACATGTGCCTAATGGAGGGTTGATTCCTTTTGCTGAAAGTATGTCATCTGCCAGTGAGACTGCACAGATCCATGGGGTGAGAAACTGGGCATTAGTAAAGGATGTAAATACTTCTGTTGTTGACACATTGTCTGATGGTATGTACAATTATTTGTCCATGCCAATTAATGCATCATCTACTGAACACCTGCAGCCTACTACTGAAGCAACATCTATTGTTTCAGATTTATCAATTTCTGTTGGAGATGCTGTTGTAAATATACCATCTGCAGCTAGTGGAGAAGGAATGGAAAGTTTGTCTGACTCTCAAGTTTCCACTGATTCATTGCCTGCTCTTGATTCTACTGTAAATTCAATGTCAGATACAGTATCCCAATCTGAACCTACTTCTGAACCATTTATAGAATCAAAAAATATAGCTAATTTTTCTGTAGAGAGGACAGAAAAATCTCTTGAAGAATTTTTTTCTAGTATCCAAGAGTCCCTCACTTCTTCAGCGAGCAGTGCCAGTAGCACCATGAAGGAGACTTACAATAACATTAATGGATCCATTTTGAAATCCACAAAGAATCTGACAGAGTCATTTGAGAATGCAATTTCTGGCATTCTTTCCAAGGGCAATGACTCTGGAGGATTTACACGCAACAATTCAATGGACTTGATGAGCCCTTTTGAGATGGGAACACCAGCAAACAATGCTATAAAAAAGGTTGTGCTGATCATAGAAGATTCTGCAGGTTCTGTTTTAGCAATAGTAGTGAATTTGGTGACAGATGTTTATAGCTTTACAAAGGCTTTGCTTCCTCCTGAAGTACAATCTGTATTAGATGTTGGTGAAGAGAAAGCGTCAAAAATCATTAAGCCACTCGGGTATGCTGTTCAGCAGGCTAATGTTGTAATTACAGATATAGAAAAAGCTGTAGGTGTGAATCCCGAGAATCCAGATAGGCCAGTTATAGTGTTTGGTGGCAGTACTATCTTCGTAGGGGTTTCTTTTTGGCAGTACAACTATGGAGGATATTCTGGTGATCTAACTGCTAAAATGGCATCAGAACTCCTTAGAAAGGAGGAAAATACTGTGTTAATTGATATCCGGCCTCAGGTTCTGAAAGAAAGTGATGGAATACCGGATCTACGAAGAGGAGCAAGATTCAAATTTGCAGGGTTGGAATTACCAGAGGTAGATGGCTCTATAAAGAAGTTACTGAAGAATGCAAATGCAATTGATGATGTCTTGACTGCAGCCGTCATCAAAAACTTGAAAATTGTCAATGGTGGTACAAAGGTGATCATTATGGATGCAGATGGTCTTCAATCCAAAAAGGTTGCTAGAGCTTTGAGGAAGCTTGGAATCAAGAGATCATATCGAATTCAAGGAGGTTTCAAGTCTTGGGTGGGAGAAGGTCTCCGTGTTAAAGAGATGAAAACTGAGACACCGTTGACAATCCTGAAAGAGGAAACAGAGGCTATTCTTGAGGAGAGCAGACCAGCACCAGGAACCATTTTTGCAGCATGTGTAGGTTTTGTTGCAGCCATCAATGCGCTGATTGAGTGGGAAAAGACACTACAACTTATTGGCTTTATTGGTGTTGTACAGGTGATCTATAGTCGAATTAATTCGTATGAAAGTGCCGAGGATCTGAAGGCTGATCTGAGGGCATTGTTTAGTCCATTTCAATCAGCTACCCAGGGCATTCTCTGGATTGCTGGACAGATGGAACCGAATAAATTGAAGTTGGCAACGTCACCGTCAACAACAGCAGTGCAAAACAGGGTTCTTCAAGCAGCTGCAAAACATGGCTCTCTGCCCTCTGAGATTGAACAGACACAAGATTTAGAGCCTGTCAGCGACACTGATACTGAAACTGAGATGCCGAATGCCTCTCAGCAGGAACTGTAATTAAGACCATTGAGTTTCAGTAATCTGATATAACACTTTGACGAAGCATCATAAAATCCCAGAGTGTAAGCCTCTTCCGCTGTATTTTCCTGTGGCCACTGAATTCATATTATATAACCTTTGCTTTGTCGTATCCAATGTCCGCAAACCTCGTATGAAATTGTGACATACGTTTTTCACATATTGTCATAAAGTGTATATTGAGCTGGACAGCTGAATTGCTTAAAAATTGTTGTAATATTATATATCATCTGTCTTTTCAAGAAAAGCCTCGCAGAT

Ace file of the UniGene sp_v3.0_unigene2222

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Extracellular calcium sensing receptor; Pinus massoniana.	-	-	0.0	29%

Source	Gene names
Sma3	POPTRDRAFT_574415; POPTRDRAFT_828175;

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: H6UZY9

Fln msg: your sequence is longer than subject: 781 - 421

Fln protein: MAINVVNAAITTLLPPSHPQQPQFCCYGRIKVYPSSFQKTAVEKIFSEEERLFFPPDHKRNHGLCFRMQAVRSDHLNAVRDPDLHAAKSVEIQTVSEKTVIGEGGFSQDVAIPSQHFENQVHVGNQLTKTGSSLEDLRDLYSPNDMNLHVPNGGLIPFAESMSSASETAQIHGVRNWALVKDVNTSVVDTLSDGMYNYLSMPINASSTEHLQPTTEATSIVSDLSISVGDAVVNIPSAASGEGMESLSDSQVSTDSLPALDSTVNSMSDTVSQSEPTSEPFIESKNIANFSVERTEKSLEEFFSSIQESLTSSASSASSTMKETYNNINGSILKSTKNLTESFENAISGILSKGNDSGGFTRNNSMDLMSPFEMGTPANNAIKKVVLIIEDSAGSVLAIVVNLVTDVYSFTKALLPPEVQSVLDVGEEKASKIIKPLGYAVQQANVVITDIEKAVGVNPENPDRPVIVFGGSTIFVGVSFWQYNYGGYSGDLTAKMASELLRKEENTVLIDIRPQVLKESDGIPDLRRGARFKFAGLELPEVDGSIKKLLKNANAIDDVLTAAVIKNLKIVNGGTKVIIMDADGLQSKKVARALRKLGIKRSYRIQGGFKSWVGEGLRVKEMKTETPLTILKEETEAILEESRPAPGTIFAACVGFVAAINALIEWEKTLQLIGFIGVVQVIYSRINSYESAEDLKADLRALFSPFQSATQGILWIAGQMEPNKLKLATSPSTTAVQNRVLQAAAKHGSLPSEIEQTQDLEPVSDTDTETEMPNASQQEL*

Protein Length: 782

Fln nts: ATACATGCCATGTCCACATTCGAATACAAACATGGCGATTATGATAAAAAGAATTGATACCACCACAAAATGATGTAAACTACGGGTTCTCAGTGGATAGCATTCACAGCCTCCTGTAATGTCTTTAACACGCACCTCTCACGTCCCCAGATGCTTTTCCTTCTGAGTTGAAGGGCAGGG_-_ATGGCAATTAATGTTGTTAATGCTGCTATCACGACACTACTTCCTCCAAGTCATCCGCAACAGCCCCAGTTTTGCTGCTATGGTAGGATAAAAGTTTATCCCTCATCATTCCAGAAGACTGCTGTGGAAAAAATATTTTCAGAGGAAGAGAGGTTATTTTTTCCTCCTGATCACAAACGAAATCATGGACTTTGCTTCCGAATGCAGGCAGTGAGATCAGACCATCTGAATGCTGTGAGAGATCCTGACCTACATGCAGCAAAATCTGTTGAAATTCAAACTGTATCAGAGAAAACAGTAATTGGAGAGGGTGGCTTTTCACAAGATGTGGCTATTCCTTCACAGCATTTTGAAAACCAGGTGCATGTTGGAAATCAGTTGACAAAAACTGGATCTTCATTGGAAGATTTGAGAGATCTATATTCTCCAAATGACATGAATTTACATGTGCCTAATGGAGGGTTGATTCCTTTTGCTGAAAGTATGTCATCTGCCAGTGAGACTGCACAGATCCATGGGGTGAGAAACTGGGCATTAGTAAAGGATGTAAATACTTCTGTTGTTGACACATTGTCTGATGGTATGTACAATTATTTGTCCATGCCAATTAATGCATCATCTACTGAACACCTGCAGCCTACTACTGAAGCAACATCTATTGTTTCAGATTTATCAATTTCTGTTGGAGATGCTGTTGTAAATATACCATCTGCAGCTAGTGGAGAAGGAATGGAAAGTTTGTCTGACTCTCAAGTTTCCACTGATTCATTGCCTGCTCTTGATTCTACTGTAAATTCAATGTCAGATACAGTATCCCAATCTGAACCTACTTCTGAACCATTTATAGAATCAAAAAATATAGCTAATTTTTCTGTAGAGAGGACAGAAAAATCTCTTGAAGAATTTTTTTCTAGTATCCAAGAGTCCCTCACTTCTTCAGCGAGCAGTGCCAGTAGCACCATGAAGGAGACTTACAATAACATTAATGGATCCATTTTGAAATCCACAAAGAATCTGACAGAGTCATTTGAGAATGCAATTTCTGGCATTCTTTCCAAGGGCAATGACTCTGGAGGATTTACACGCAACAATTCAATGGACTTGATGAGCCCTTTTGAGATGGGAACACCAGCAAACAATGCTATAAAAAAGGTTGTGCTGATCATAGAAGATTCTGCAGGTTCTGTTTTAGCAATAGTAGTGAATTTGGTGACAGATGTTTATAGCTTTACAAAGGCTTTGCTTCCTCCTGAAGTACAATCTGTATTAGATGTTGGTGAAGAGAAAGCGTCAAAAATCATTAAGCCACTCGGGTATGCTGTTCAGCAGGCTAATGTTGTAATTACAGATATAGAAAAAGCTGTAGGTGTGAATCCCGAGAATCCAGATAGGCCAGTTATAGTGTTTGGTGGCAGTACTATCTTCGTAGGGGTTTCTTTTTGGCAGTACAACTATGGAGGATATTCTGGTGATCTAACTGCTAAAATGGCATCAGAACTCCTTAGAAAGGAGGAAAATACTGTGTTAATTGATATCCGGCCTCAGGTTCTGAAAGAAAGTGATGGAATACCGGATCTACGAAGAGGAGCAAGATTCAAATTTGCAGGGTTGGAATTACCAGAGGTAGATGGCTCTATAAAGAAGTTACTGAAGAATGCAAATGCAATTGATGATGTCTTGACTGCAGCCGTCATCAAAAACTTGAAAATTGTCAATGGTGGTACAAAGGTGATCATTATGGATGCAGATGGTCTTCAATCCAAAAAGGTTGCTAGAGCTTTGAGGAAGCTTGGAATCAAGAGATCATATCGAATTCAAGGAGGTTTCAAGTCTTGGGTGGGAGAAGGTCTCCGTGTTAAAGAGATGAAAACTGAGACACCGTTGACAATCCTGAAAGAGGAAACAGAGGCTATTCTTGAGGAGAGCAGACCAGCACCAGGAACCATTTTTGCAGCATGTGTAGGTTTTGTTGCAGCCATCAATGCGCTGATTGAGTGGGAAAAGACACTACAACTTATTGGCTTTATTGGTGTTGTACAGGTGATCTATAGTCGAATTAATTCGTATGAAAGTGCCGAGGATCTGAAGGCTGATCTGAGGGCATTGTTTAGTCCATTTCAATCAGCTACCCAGGGCATTCTCTGGATTGCTGGACAGATGGAACCGAATAAATTGAAGTTGGCAACGTCACCGTCAACAACAGCAGTGCAAAACAGGGTTCTTCAAGCAGCTGCAAAACATGGCTCTCTGCCCTCTGAGATTGAACAGACACAAGATTTAGAGCCTGTCAGCGACACTGATACTGAAACTGAGATGCCGAATGCCTCTCAGCAGGAACTGTAA___TTAAGACCATTGAGTTTCAGTAATCTGATATAACACTTTGACGAAGCATCATAAAATCCCAGAGTGTAAGCCTCTTCCGCTGTATTTTCCTGTGGCCACTGAATTCATATTATATAACCTTTGCTTTGTCGTATCCAATGTCCGCAAACCTCGTATGAAATTGTGACATACGTTTTTCACATATTGTCATAAAGTGTATATTGAGCTGGACAGCTGAATTGCTTAAAAATTGTTGTAATATTATATATCATCTGTCTTTTCAAGAAAAGCCTCGCAGAT

Fln Alignment:

Contig2222___PANNAIKKVVLIIEDSAGSVLAIVVNLVTDVYSFTKALLPPEVQSVLDVGEEKASKIIKPLGYAVQQANVVITDIEKAVGVNPEN--PDRPVIVFGGS-----------TIFVGVSFWQYNYGGYSGDLTAKMASELLRKEENTVLIDIRPQVLKESDGIPDLRRGARFKFAGLELPEVDGSIKKLLKNANAIDDVLTAAVIKNLKIVNGGTKVIIMDADGLQSKKVARALRKLGIKRSYRIQGGFKSWVG
H6UZY9______________PAMDAAMPYIQKASDSAVQIASPVASDVTQ--QAQKALESAGVDSKSVVEAAKTAAVVA--GGAAEQTTKAIEGVKPIASATIDSLLSSDPIVLVGGAGALILLYLLVPSIFSTIAF---SLRGYKGELTPAQALQLLTKQDY-VMIDIRTEKERSKAGIPSLPRSAKNKLFSLAVEEFPNKLRSLLRNSKKVEAEVAALKISYLKRLNKNSRVVIMDSYGDVAKTVARALTGLGFSNAWVLTDGFSGGRG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1878	90	10			0.90298
1880	77			11	0.968132
1881		88		11	0.923564
2084		88		11	0.923564
2086			88	11	0.923564
2087	88			11	0.923564
2090		88	11		0.923564
2156		80	20		0.999996
2166	10		90		0.90298
2208		11		77	0.968132
2210		11	88		0.923564
2311	20	80			0.999996
2312	90	10			0.90298
2313			80	20	0.999996
2748	87			12	0.992554
2749	85		14		0.993533
2751	85	14			0.993533
2763	83		16		0.994512
2767		16		83	0.994512
2781		20		80	0.995493
2785	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain