SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2206

Length: 3118 nt

UniGene Fasta

>sp_v3.0_unigene2206
GAATATTGGCTGGAGCTGTCCTGCTGTGTGAGCCCCTAGTGTAAAATTTGGTTTTTTTGTGGGCAAGCCTTCCTGATCGTCCCCTGCAGTTTTCACTTTGCGGATCATACTCCACAACTGTGCTTGTTCATTACATTCTAGAAAATTCAACTAGAAGGCAAATTACAAAAGTTTTGATATGCTATTGTCTGTGGAGGGAGCAATATTCTTTTCCTGTGTTGATCTTCCTTGCAGATCTGGAGTTGGGTGTCCTATTGCATAATTACGGGCAGCTGGATCCATTGCTAGAAACCGTCTGTTTCTGTGGTTTTGAAGTTGTAGAAAGGCTGCAGGTCATGGAAGCATAGCATCAACTCAAAACAGTAGAAAAGTTTTACAAGGCTGGAGGTCTGGGCAGTGAGTTTTGATCAGGGAAAGTGCTTGGATTGAAGCTGGAGCGCCGTTTTCAATGAAGAAAGGGAAATTGGACCCTAATGGGGGAGGGCGGTTGAAATTAACACATATTATGCTGCTGTTTGCAGGTATGTATTTGCTGTTTGTGTGCTTAGAATTCTTCCAGCTCTTTGGAACCCGTCCAATATTCAATGCAGATGAGAGTACAAAAAGTTTGGATGACTTAATCAGAGAGAGTTTGGGAGAGGAAGAGGACCAAGATAGGCCTTTCTTCAGGTCATTATTTTATAAGGATACGCTTCAGAAAAGAGTAGATGACAGGCAGAGCAAGAATGCTCCACAGAGGCCTCAGAAAGAGTCATTCAGACTATTGCCAGGAACTGTCCCAATTAATAACCCTGTCAAGCCCGAATATGGGCGAATATCGGGAGCCATTTTGGAGCAAATGAATGAAACAAAGGAGCTGTCCGAACTTCAGAGGATGGCGAAGGATGCCTGGGTTGTTGGCCTGAAAGCATGGAAAGAAGCGGAAGAAGCAACTACTTTGCAGGGAAACCAAAGCATTGCGGGGCATTTGGGGGAAGGAGCAGTGGAGCCTTGCCCTCAATCAATATCCTTGACTGGCCAGGAAATGGAGAAGTCTGGGCATATGATGCATCTTCCCTGTGGGTTGACATTAGGTTCTTCCATAACATTAATAGGGACTCCTCGCAAGGCTCACATTGATTACTCACCCAAAATCTCTAGTGACGAGCCTTCTACATTTGTGTCTCAGTTCATGCTTGAACTGCAAGGTCTCAAGGCAGTTGATGGTGAAGAACCCCCCAGAGTGCTGCACGTCAATCCCAGACTGAAAGGTGACTGGAGTGGTAGGCCTGTCATAGAGCAGAATACATGCTACAGGATGCAGTGGGGCACAGCTCAAAGGTGTGAAGGGTGGCGAACAAAAGATGACGATGATACGGTTGATGGGTCTGTGAAATGTGAAAAGTGGATTCGAGATGATAATGAAGGCCCTAAAGAATCTAAGACGACATGGTGGTTGAATCGCTTTATTGGTCGTGAAGTAAAGCCAACAATGGATTGGCCATTTCCCTTTGCAGAGGAACGCTTGTTCGTACTTACTTTAAGGGCAGGATTAGAAGGCTATCATATGAACGTGGATGGTAGGCACGTGACCTCGTTCCCTTATCGAACTGGCTTTGTTCTCGAGGATGCAACTGGCTTATCACTAAATGGCGACATAGATGTTCATTCAGTATTTGCTGCATCCTTACCTACATCTCTTCCAAGCTTCTCAACTCAAAGAATCCTTGACATGTCGAACAAATGGAAAGCTCCCTCTTTGCCGGAGGGTCCCATAGATCTCCTCATTGGTGTCCTTTCTGCAAGTAATCACTTTGCAGAGCGCATGGCTGTGAGGAAGACATGGATGCAATCTCAATTGATTAGATCGTCAAAAGTTGTGGCCCGTTTCTTTGTTGCCTTGAATGCAAGGAAGGAGGTCAATGTGCAGCTAAAGAATGAAGCAGATTTTTATGGAGATATTATTATCGTTCCATTTATGGACCGTTATGAACTTGTAGTGTTGAAGACTGTTGCAATTTGTGAATATGGGGTTCGAAATATTTCTGCAAAATACGTTATGAAATGTGATGATGATACCTTCGTGAGAGTGGATACTGTATTGAAGGAAATCAAAAGAACTCCCCATGTACATGGCTTGTATATGGGTAACCTTAATCTTTTCCACAGGCCACTCCGTGTTGGCAAATGGGCTGTAACATATGAGGAATGGCCAGAAGAAGAGTACCCCACTTATGCAAATGGACCAGGATATATCATTTCAAATGACGTAGCGAATTTTGTTGTATCTCAACATGCTAATCACACTTTGAGGCTTTTCAAGATGGAAGATGTTAGCATGGGGATGTGGGTTGAACAATTCAATGCTTCTTCACGTGTTCAGTACTCTCATAACTGGAAATTCTGCCAATATGGATGCACAGATGATTACTACACCGCACATTATCAGTCTCCCAGACAAATGCTCTGCATGTGGGACAAACTATTGAAAGGGAAAGTTGAGTGTTGCTCCTTGTGAAGGTGTTAGTATTGTTTTGCAGCAATTGCCTGTACATTTAAGAAATGTTTAGCTGTATTCAAATCCTACCTTGAATGCATTATCCAGCTGTCAATTTTGATGAATGTTTTGAAGACCTCTTCGCTGAAGCTGAATATAAGTTTACAATCATTTCTTACACCCAAAGAAAGCACCTAAGAATGGTACTGTGCTTAGACTCCAATCATTAGGCTTAAAGATGTGGATACCTTGATGTGGGTGGTTGTCCAAAGTTTCTGTGTGTCTGTAACAGTTATGCAGACAAAATATTCAGGAGTTTCATCCTCTTGTTCACACGGCATGTAAATTTCATGGACCCATATGGGACAGCCTATTACCATTATAAATGTTTGATCGTTATGCTTAAAGATTAGATGCCTTGACAAATAGGCTGTCACTTCCCAAATTTTTATAATGGGAGTAGACATTGTTGTCATGAGTTCCCTCGTTAAATCAGATGTAAATCAGGCAGACGCTTCTTTGTATTTATATACTGTCTTAATCCTTTTATCAGTGCACCTCCTAAATAATCAATTATATGGCAGTTGGAATTGATCAGCCCTGGAATCTGATCATTCTTGTATTGTTACTTTTGGTTTGATA

Ace file of the UniGene sp_v3.0_unigene2206

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SYI3_RICCO	-	-	0.0	58%
FL-Next	sp=Probable beta-1,3-galactosyltransferase 19; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Galactosyltransferase family	-	-	8.451e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	1.389e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		1.389e-07	%
Sma3	N-Glycan biosynthesis	00510		1.389e-07	%
Sma3	Mucin type O-Glycan biosynthesis	00512		1.389e-07	%
Sma3	Various types of N-glycan biosynthesis	00513		1.389e-07	%
Sma3	Other types of O-glycan biosynthesis	00514		1.389e-07	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		1.389e-07	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		1.389e-07	%
Sma3	Lipopolysaccharide biosynthesis	00540		1.389e-07	%
Sma3	Peptidoglycan biosynthesis	00550		1.389e-07	%
Sma3	Glycerolipid metabolism	00561		1.389e-07	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		1.389e-07	%
Sma3	Sphingolipid metabolism	00600		1.389e-07	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		1.389e-07	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		1.389e-07	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		1.389e-07	%
Sma3	Carotenoid biosynthesis	00906		1.389e-07	%
Sma3	Zeatin biosynthesis	00908		1.389e-07	%
Sma3	Flavonoid biosynthesis	00941		1.389e-07	%
Sma3	Anthocyanin biosynthesis	00942		1.389e-07	%
Sma3	Flavone and flavonol biosynthesis	00944		1.389e-07	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		1.389e-07	%
Sma3	Betalain biosynthesis	00965		1.389e-07	%
Sma3	Biosynthesis of type II polyketide products	01057		1.389e-07	%
Sma3	Metabolic pathways	01100		1.389e-07	%
Sma3	Biosynthesis of secondary metabolites	01110		1.389e-07	%
Sma3	Galactosylxylosylprotein 3-beta-galactosyltransferase.	EC:2.4.1.134	-	9.658e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	9.658e-12	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	9.658e-12	%
Sma3	Metabolic pathways	01100	9.658e-12	%

Source	Gene names
Sma3	At1g27120; At1g74800; At4g21060; At5g62620; B3GALT17; B3GALT18; B3GALT19; B3GALT20; F25A4.23; GSVIVT00000056001; GSVIVT00028354001; GSVIVT00028951001; LOC_Os03g48610; LOC_Os03g58900; LOC_Os03g58920; LOC_Os12g16480; LOC_Os12g41956; MRG21.3; OJ1715_A07.11-1

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	galactosyltransferase activity	GO:0008378	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62620.1	Galactosyltransferase family protein chr5:25137136-25139764 FORWARD LENGTH=681	64%
RefSeq	Arabidopsis thaliana	NP_201068.1	putative beta-1,3-galactosyltransferase 19 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002308783.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LV16

Fln msg:

Fln protein: MKKGKLDPNGGGRLKLTHIMLLFAGMYLLFVCLEFFQLFGTRPIFNADESTKSLDDLIRESLGEEEDQDRPFFRSLFYKDTLQKRVDDRQSKNAPQRPQKESFRLLPGTVPINNPVKPEYGRISGAILEQMNETKELSELQRMAKDAWVVGLKAWKEAEEATTLQGNQSIAGHLGEGAVEPCPQSISLTGQEMEKSGHMMHLPCGLTLGSSITLIGTPRKAHIDYSPKISSDEPSTFVSQFMLELQGLKAVDGEEPPRVLHVNPRLKGDWSGRPVIEQNTCYRMQWGTAQRCEGWRTKDDDDTVDGSVKCEKWIRDDNEGPKESKTTWWLNRFIGREVKPTMDWPFPFAEERLFVLTLRAGLEGYHMNVDGRHVTSFPYRTGFVLEDATGLSLNGDIDVHSVFAASLPTSLPSFSTQRILDMSNKWKAPSLPEGPIDLLIGVLSASNHFAERMAVRKTWMQSQLIRSSKVVARFFVALNARKEVNVQLKNEADFYGDIIIVPFMDRYELVVLKTVAICEYGVRNISAKYVMKCDDDTFVRVDTVLKEIKRTPHVHGLYMGNLNLFHRPLRVGKWAVTYEEWPEEEYPTYANGPGYIISNDVANFVVSQHANHTLRLFKMEDVSMGMWVEQFNASSRVQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKLLKGKVECCSL*

Protein Length: 684

Fln nts: GAATATTGGCTGGAGCTGTCCTGCTGTGTGAGCCCCTAGTGTAAAATTTGGTTTTTTTGTGGGCAAGCCTTCCTGATCGTCCCCTGCAGTTTTCACTTTGCGGATCATACTCCACAACTGTGCTTGTTCATTACATTCTAGAAAATTCAACTAGAAGGCAAATTACAAAAGTTTTGATATGCTATTGTCTGTGGAGGGAGCAATATTCTTTTCCTGTGTTGATCTTCCTTGCAGATCTGGAGTTGGGTGTCCTATTGCATAATTACGGGCAGCTGGATCCATTGCTAGAAACCGTCTGTTTCTGTGGTTTTGAAGTTGTAGAAAGGCTGCAGGTCATGGAAGCATAGCATCAACTCAAAACAGTAGAAAAGTTTTACAAGGCTGGAGGTCTGGGCAGTGAGTTTTGATCAGGGAAAGTGCTTGGATTGAAGCTGGAGCGCCGTTTTCA_-_ATGAAGAAAGGGAAATTGGACCCTAATGGGGGAGGGCGGTTGAAATTAACACATATTATGCTGCTGTTTGCAGGTATGTATTTGCTGTTTGTGTGCTTAGAATTCTTCCAGCTCTTTGGAACCCGTCCAATATTCAATGCAGATGAGAGTACAAAAAGTTTGGATGACTTAATCAGAGAGAGTTTGGGAGAGGAAGAGGACCAAGATAGGCCTTTCTTCAGGTCATTATTTTATAAGGATACGCTTCAGAAAAGAGTAGATGACAGGCAGAGCAAGAATGCTCCACAGAGGCCTCAGAAAGAGTCATTCAGACTATTGCCAGGAACTGTCCCAATTAATAACCCTGTCAAGCCCGAATATGGGCGAATATCGGGAGCCATTTTGGAGCAAATGAATGAAACAAAGGAGCTGTCCGAACTTCAGAGGATGGCGAAGGATGCCTGGGTTGTTGGCCTGAAAGCATGGAAAGAAGCGGAAGAAGCAACTACTTTGCAGGGAAACCAAAGCATTGCGGGGCATTTGGGGGAAGGAGCAGTGGAGCCTTGCCCTCAATCAATATCCTTGACTGGCCAGGAAATGGAGAAGTCTGGGCATATGATGCATCTTCCCTGTGGGTTGACATTAGGTTCTTCCATAACATTAATAGGGACTCCTCGCAAGGCTCACATTGATTACTCACCCAAAATCTCTAGTGACGAGCCTTCTACATTTGTGTCTCAGTTCATGCTTGAACTGCAAGGTCTCAAGGCAGTTGATGGTGAAGAACCCCCCAGAGTGCTGCACGTCAATCCCAGACTGAAAGGTGACTGGAGTGGTAGGCCTGTCATAGAGCAGAATACATGCTACAGGATGCAGTGGGGCACAGCTCAAAGGTGTGAAGGGTGGCGAACAAAAGATGACGATGATACGGTTGATGGGTCTGTGAAATGTGAAAAGTGGATTCGAGATGATAATGAAGGCCCTAAAGAATCTAAGACGACATGGTGGTTGAATCGCTTTATTGGTCGTGAAGTAAAGCCAACAATGGATTGGCCATTTCCCTTTGCAGAGGAACGCTTGTTCGTACTTACTTTAAGGGCAGGATTAGAAGGCTATCATATGAACGTGGATGGTAGGCACGTGACCTCGTTCCCTTATCGAACTGGCTTTGTTCTCGAGGATGCAACTGGCTTATCACTAAATGGCGACATAGATGTTCATTCAGTATTTGCTGCATCCTTACCTACATCTCTTCCAAGCTTCTCAACTCAAAGAATCCTTGACATGTCGAACAAATGGAAAGCTCCCTCTTTGCCGGAGGGTCCCATAGATCTCCTCATTGGTGTCCTTTCTGCAAGTAATCACTTTGCAGAGCGCATGGCTGTGAGGAAGACATGGATGCAATCTCAATTGATTAGATCGTCAAAAGTTGTGGCCCGTTTCTTTGTTGCCTTGAATGCAAGGAAGGAGGTCAATGTGCAGCTAAAGAATGAAGCAGATTTTTATGGAGATATTATTATCGTTCCATTTATGGACCGTTATGAACTTGTAGTGTTGAAGACTGTTGCAATTTGTGAATATGGGGTTCGAAATATTTCTGCAAAATACGTTATGAAATGTGATGATGATACCTTCGTGAGAGTGGATACTGTATTGAAGGAAATCAAAAGAACTCCCCATGTACATGGCTTGTATATGGGTAACCTTAATCTTTTCCACAGGCCACTCCGTGTTGGCAAATGGGCTGTAACATATGAGGAATGGCCAGAAGAAGAGTACCCCACTTATGCAAATGGACCAGGATATATCATTTCAAATGACGTAGCGAATTTTGTTGTATCTCAACATGCTAATCACACTTTGAGGCTTTTCAAGATGGAAGATGTTAGCATGGGGATGTGGGTTGAACAATTCAATGCTTCTTCACGTGTTCAGTACTCTCATAACTGGAAATTCTGCCAATATGGATGCACAGATGATTACTACACCGCACATTATCAGTCTCCCAGACAAATGCTCTGCATGTGGGACAAACTATTGAAAGGGAAAGTTGAGTGTTGCTCCTTGTGA___AGGTGTTAGTATTGTTTTGCAGCAATTGCCTGTACATTTAAGAAATGTTTAGCTGTATTCAAATCCTACCTTGAATGCATTATCCAGCTGTCAATTTTGATGAATGTTTTGAAGACCTCTTCGCTGAAGCTGAATATAAGTTTACAATCATTTCTTACACCCAAAGAAAGCACCTAAGAATGGTACTGTGCTTAGACTCCAATCATTAGGCTTAAAGATGTGGATACCTTGATGTGGGTGGTTGTCCAAAGTTTCTGTGTGTCTGTAACAGTTATGCAGACAAAATATTCAGGAGTTTCATCCTCTTGTTCACACGGCATGTAAATTTCATGGACCCATATGGGACAGCCTATTACCATTATAAATGTTTGATCGTTATGCTTAAAGATTAGATGCCTTGACAAATAGGCTGTCACTTCCCAAATTTTTATAATGGGAGTAGACATTGTTGTCATGAGTTCCCTCGTTAAATCAGATGTAAATCAGGCAGACGCTTCTTTGTATTTATATACTGTCTTAATCCTTTTATCAGTGCACCTCCTAAATAATCAATTATATGGCAGTTGGAATTGATCAGCCCTGGAATCTGATCATTCTTGTATTGTTACTTTTGGTTTGATA

Fln Alignment:

Contig2206___ELQRMAKDAWVVGLKAWKEAEEATTLQG-NQSIAGHLGEGAVEPCPQSISLTGQEMEKSGHMMHLPCGLTLGSSITLIGTPRKAHIDYSPKIS---SDEPSTFVSQFMLELQGLKAVDGEEPPRVLHVNPRLKGDWSGRPVIEQNTCYRMQWGTAQRCEGWRTKDDDDTVDGSVKCEKWIRDDNEGPKESKTT----WWLNRFIGREVKPTMDWPFPFAEERLFVLTLRAGLEGYHMNVDGRHVTSFPYRTGFVLEDATGLSLNGDIDVHSVFAASLPTSLPSFSTQRILDMSNKWKAPSLPEGPIDLLIGVLSASNHFAERMAVRKTWMQSQLIRSSKVVARFFVALNARKEVNVQLKNEADFYGDIIIVPFMDRYELVVLKTVAICEYGVRNISAKYVMKCDDDTFVRVDTVLKEIKRTPHVHGLYMGNLNLFHRPLRVGKWAVXXXXXXXXXXXXXANGPGYIISNDVANFVVSQHANHTLRLFKMEDVSMGMWVEQFNASSR-VQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKL-LKGKVECCSL
Q9LV16______________ELHKSAKVAWEVGRKIWEELESGKTLKALEKEKKKKIEEHGTNSCSLSVSLTGSDLLKRGNIMELPCGLTLGSHITVVGKPRAAHSEKDPKISMLKEGDEAVKVSQFKLELQGLKAVEGEEPPRILHLNPRLKGDWSGKPVIEQNTCYRMQWGSAQRCEGWRSRDDEETVDGQVKCEKWARDDSITSKEEESSKAASWWLSRLIGRSKKVTVEWPFPFTVDKLFVLTLSAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTINGDIDVHSVFAGSLPTSHPSFSPQRHLELSSNWQAPSLPDEQVDMFIGILSAGNHFAERMAVRRSWMQHKLVKSSKVVARFFVALHSRKEVNVELKKEAEFFGDIVIVPYMDSYDLVVLKTVAICEYGAHQLAAKFIMKCDDDTFVQVDAVLSEAKKTPTDRSLYIGNINYYHKPLRQGKWSVTYEEWPEEDYPPYANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNNGTKPVDYIHSLRFCQFGCIENYLTAHYQSPRQMICLWDKLVLTGKPQCCNM

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1606		50		50	1.0
1704	14		85		0.993533
1705	71			14	0.984337
1706	85		14		0.993533
1747	71		28		1.0
1880	11		88		0.923564
2081	10		90		0.90298
2082		10		90	0.90298
2119			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain