SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2201

Length: 1432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2201 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-MYB transcription factor MYB4 n=1 Tax=Picea glauca RepID=A5JYE8_PICGL	-	-	0.0	58%
FL-Next	tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	58%
Sma3	MYB transcription factor	-	-	2.806e-34	-

Source	Gene names
Sma3	117M18_17; At1g18570; At1g18570/F25I16_4; At1g22640; At1g57557; At1g57560; At1g63910; At1g74430; At1g74430/F1M20_11; At2g16720; At3g01140; At3g02940; At3g08500; At3g12720; At3g13890; At4g01680; At4g01680/T15B16.4; At4g05100; At4g09460; At4g12350; At4g2268

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to UV	GO:0009411	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	indole glucosinolate biosynthetic process	GO:0009759	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002313334.1	predicted protein, partial [Populus trichocarpa]	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5JYE8

Fln msg: your sequence is longer than subject: 450 - 334

Fln protein: MWCTPEQNGSPVSPTPKLRKGLWSPEEDEKLITYIMNKGMVGCSWTSIAKQAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEEYLIRNLHSILGNRWSQIAASLPGRTDNEIKNYWNTCIKKKKLKTPSSFSTKSNITSESDRTCNTYSASTHPAQDAFNFSRSGQQYLNAMPEMFCPEPPNKTVNLRFTSVENQYSCVDPLGFAKHRVQLQDQNHFSVDPDSICNNLIPNSQMQINSISTQTQHEVCDPLKEERKSDGEMISNENENEIMIDYSAITGCSANSYSNSADFTDVSLSACTSQDPGISFLEDHNYEGLPEKSNHQSCSAPNSCSQFSKPGVLWVDVDHFCNVQAGTDQDDYRVPANWRCGEVNLGVPVNIDDKQKSYQVGQIGGAHISDQWNFTRTSPPLGREASGQLDFECDGAAGQLPTWPLDDHLYNLHSDTASNLF*

Protein Length: 451

Fln nts: CGTCGAACCGATTCCCGAGGCGAGCAAAACCTTTTGTCAACCTGTGTTCAAATCGCACGCAGGGCAAAGATAATA_-_ATGTGGTGCACACCAGAGCAAAATGGCTCCCCAGTTTCCCCCACACCAAAGCTAAGAAAAGGTCTCTGGTCACCTGAAGAAGATGAGAAGCTTATCACCTATATCATGAACAAGGGCATGGTAGGGTGTTCCTGGACCTCTATCGCCAAGCAAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGACTGAGATGGATTAACTACTTACGCCCAGATCTGAAACGCGGCTCATTTTCACCCCAAGAAGAGTATTTGATCAGAAACTTACACTCTATTTTGGGCAACAGGTGGTCTCAAATAGCTGCCAGTTTGCCGGGACGCACAGATAATGAAATCAAGAATTATTGGAATACTTGCATCAAGAAGAAGAAGCTGAAAACCCCCTCCAGCTTCTCCACCAAATCTAATATCACCTCCGAATCCGATCGTACCTGCAACACTTATTCAGCCTCCACTCATCCTGCCCAGGATGCTTTCAATTTCTCTCGTTCTGGCCAGCAATACTTGAACGCCATGCCTGAAATGTTTTGCCCAGAGCCACCCAATAAAACCGTTAACCTGCGATTCACCAGTGTTGAAAATCAGTACTCTTGTGTTGACCCATTGGGATTTGCAAAACATCGTGTCCAGTTACAGGATCAGAATCACTTTTCAGTTGATCCGGACTCAATCTGCAATAACCTGATTCCTAATTCTCAGATGCAGATTAATTCTATTTCTACTCAAACCCAGCATGAGGTTTGCGACCCATTGAAAGAAGAAAGAAAAAGTGATGGCGAGATGATCAGTAATGAAAATGAAAATGAGATCATGATTGACTATTCTGCCATAACTGGCTGTAGCGCTAATTCATACTCAAATTCTGCTGATTTTACTGATGTTTCTCTATCAGCTTGCACCAGTCAAGACCCTGGAATTAGTTTCCTGGAAGATCATAATTACGAGGGCCTTCCTGAGAAATCTAACCATCAATCATGCTCGGCTCCTAATTCCTGTTCCCAATTTAGCAAACCAGGAGTTTTATGGGTAGACGTTGATCATTTCTGTAACGTTCAGGCTGGGACTGATCAGGATGATTACAGGGTTCCTGCTAATTGGAGGTGTGGTGAAGTAAATTTGGGCGTTCCAGTGAATATTGATGATAAGCAGAAGAGCTATCAGGTGGGTCAGATAGGAGGAGCGCATATTAGTGATCAATGGAACTTTACACGAACTTCTCCACCATTGGGAAGAGAAGCAAGTGGGCAGTTGGACTTTGAATGTGATGGTGCAGCAGGCCAACTTCCCACTTGGCCACTGGACGACCATTTGTACAATCTCCATAGTGATACTGCATCAAATTTATTTTAG___CGAACTA

Fln Alignment:

Contig2201___MWCTPEQNGSPVSPTPKLRKGLWSPEEDEKLITYIMNKGMVGCSWTSIAKQAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEEYLIRNLHSILGNRWSQIAASLPGRTDNEIKNYWNTCIKKKKLKTPSSFSTKSNITSESDRTCNTYSASTHPAQDAFNFSRSGQQYLNAMPEMFCPEPPNKTVNLRFTSVENQYSCVDPLGFAKHRVQLQDQNHFSVDPDSICNNLIPNSQMQINSISTQTQHE
A5JYE8______________MSCTTGGLPSPISK-PKLRKGLWSPEEDDKLINYMMKNGQ-GC-WSDVAKQAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSCI-KKKLKHLSASNNNSKSICASNRT-NTMNSSMTP------FSESSAQPLEVMPTRY--QPPN-AFNHEVPTAENQFCIPDVL--ALRHEQVQNQNQFSIDQDSATNNLI-SQLWNSNSISLST-HE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
740		18		81	0.999994
1362	85		14		0.993533
1378		16	83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
986	997	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain