SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2187

Length: 1411 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2187

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Indole-3-acetate O-methyltransferase 1 n=3 Tax=Oryza sativa RepID=IAMT1_ORYSJ	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	H1005F08.6; IAMT1; OSJNBa0087O24.5; Os04g0665200; OsI_17812; OsJ_10303; POPTRDRAFT_579741;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQW8

Fln msg:

Fln protein: METTKNLQNVLCMKGGNGDSSYVNNSSAQLNIVMAMKPVLEHSIYENVTSVMGMREVDNVFRIADLGCATGINTLLAVDTIVDAVKLTFIRHSMDVPEFQVHFADLPSNDFNTLFRTLPSLKGGADGITAAEHNEDKPPATRSYFASAVSGSHYGRLFPRQTLHFCHSSTSLHWLSRVPAIVEDTNSVAWNEGHVYISNDTVADAYLNQFKQDFASFLEARAQEIVPGGCMFIALAARNCGDIKQQGGVGACARRLEAAFEELINEWQSLIDKPQLDSFNLPFYCPSVEELQSIVESEQSFEIDNIRLLTDFPVYGLWEVREGEEERFGRIVSNFYRALFENIVGTHLGSDEHLVDEIFMRIGKRAAAKYEEFVLDKVDVAVAVLIRKRA*

Protein Length: 392

Fln nts: GTATTGCATTCAGCTTTCAGTGTTGCAAAATAATCGCCGAGCCTTTTGGGTCGTCTATCCA_-_ATGGAGACCACGAAAAACCTGCAGAATGTGCTGTGCATGAAGGGTGGAAATGGGGATTCGAGCTATGTCAACAACTCATCTGCCCAGTTAAATATTGTTATGGCCATGAAGCCCGTTCTGGAGCATTCGATCTACGAGAACGTGACATCTGTCATGGGAATGAGGGAGGTAGATAACGTATTTCGTATTGCAGATTTGGGGTGCGCAACGGGGATCAATACTCTGCTCGCAGTAGACACCATCGTGGATGCTGTGAAATTAACTTTCATTCGGCATTCCATGGACGTGCCGGAATTCCAGGTGCACTTCGCCGATCTCCCGTCAAATGATTTCAATACATTATTCCGAACGTTGCCTTCACTGAAAGGCGGCGCAGATGGAATAACAGCAGCAGAGCACAATGAAGATAAGCCTCCAGCGACTAGATCTTACTTCGCATCAGCGGTGTCGGGATCGCATTACGGACGCCTTTTCCCACGGCAAACCCTCCATTTCTGCCACTCCTCCACTAGCCTGCACTGGCTCTCTCGAGTTCCTGCTATCGTTGAGGACACAAATTCTGTTGCTTGGAACGAGGGCCATGTTTATATATCCAACGATACAGTGGCCGATGCGTATCTCAACCAATTCAAACAAGACTTTGCATCATTTTTAGAAGCCCGAGCACAGGAAATTGTTCCTGGAGGATGCATGTTCATAGCGCTCGCGGCTCGTAATTGTGGCGACATAAAGCAACAAGGCGGGGTAGGAGCTTGCGCTCGTCGCTTGGAAGCAGCATTTGAGGAGCTAATAAACGAGTGGCAGAGTTTGATTGATAAACCGCAACTAGACTCCTTCAACCTTCCTTTCTACTGTCCAAGTGTGGAAGAGCTGCAGAGCATCGTGGAATCGGAGCAGTCATTCGAAATAGATAACATTAGGCTTCTCACTGATTTTCCTGTGTATGGATTGTGGGAGGTTAGAGAAGGGGAAGAGGAGAGGTTTGGGAGAATAGTAAGTAACTTTTACAGAGCCTTGTTTGAGAATATTGTGGGAACTCACTTGGGGTCGGATGAGCATCTTGTGGATGAAATTTTCATGAGGATTGGAAAGAGGGCCGCTGCTAAATATGAAGAGTTCGTTCTCGATAAAGTCGACGTCGCTGTTGCCGTTCTTATTCGCAAGAGAGCTTGA___TTTCTTGATTCACTCTTTAGGTCATCTTGCATGCCGGTTGTATAATAAGGGTTTATTAAAAAACCAGGAGTTTTACTATGATAATTTCAAAAATAGGGTTTATCAAAAAACCAGGAGTTTTACTATGATAATTTCAAAAATATAAGACGAATGATATTATATAATTTGAATGAGCTT

Fln Alignment:

Contig2187___METTKNLQNVLCMKGGNGDSSYVNNS-SAQLNIVMAMKPVLEHSIYENVTSVMGMREVDNVFRIADLGCATGINTLLAVDTIVDAVKLTFIRHSMDVPEFQVHFADLPSNDFNTLFRTLPSLKG--------GADGITAAE-HNEDKPPATRSYFASAVSGSHYGRLFPRQTLHFCHSSTSLHWLSRVPAIVEDTNSVAWNEGHVYISNDTVADAYLNQFKQDFASFLEARAQEIVPGGCMFIALAARNCGDIKQQGGVGACARRLEAAFEELINEWQSLIDKPQLDSFNLPFYCPSVEELQSIVESEQSFEIDNIRLLTDFPVYXXXXXXXXXXXXXXXIVSNFYRALFENIVGTHLGSDEHLVDEIFMRIGKRAAAKYEEF
A9NQW8______________MESVNTLENVLCMKGGNGDSSYAYHSPSVQLKIVLALKPLLENGIYQNVRT--SKKAVDGVFRIADLGCATGMNTLLTADTIVTAVKSTFIRHSMEVPEFQVHFADLPSNDFNTLFRTLPPFRGPVEILSGDGRTGLTAAAVHDVDKPPATRSYFASAVSGSHYRRLFPRQTLHFCHSSTSLHWLSQVPASIEDRSSAAWNGGHVYISSDAVADAYLNQFKQDFAAFLDARAEEIIPGGCMFTALLGRNSADVKEQSGLGACAFHLEAAFQELVNE--GLIEEEKLDSFNIPYYGPSVEELRSIVETENSFEIKSVRVLSGFPLHPLLEVREGEEQMFGRIVGKHYRALFENIVGAHLRWDEYLIDEFFARIANRAAAKYGEY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
72		33		66	0.997452
373	33	66			0.997452
1064		40		60	1.0
1076			60	40	1.0
1077		40		60	1.0
1078	40		60		1.0
1140	14	14		71	0.984337
1225	14		85		0.993533
1255		16	83		0.994512
1257		66	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain