SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2177

Length: 1767 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene2177 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor IIB (ISS) [Ostreococcus tauri] emb\|CAL56498.1\| transcription factor IIB (ISS) [Ostreococcus tauri]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	At2g01280; At2g45100; At3g09360; CHLREDRAFT_112803; F26G16.4; F3L24.23; GSVIVT00003811001; MICPUCDRAFT_48092; MICPUN_82380; OSTLU_36784; OSTLU_41529; Os05g0305100; OsI_19387; OsJ_17983; Ot13g01700; PHATRDRAFT_30925; PHYPADRAFT_135738; POPTRDRAFT_846349; P

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	translational initiation	GO:0006413	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3		IPR006670	-	-
Sma3	Brf1-like TBP-binding	IPR011665	-	-
Sma3	Zinc finger, TFIIB-type	IPR013137	-	-
Sma3	Transcription factor TFIIB, cyclin-related	IPR013150	-	-
Sma3	Cyclin-like	IPR013763	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314140.1	predicted protein, partial [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP4

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 419 - 746

Fln protein: MVWCSYCGKDQPTERDDINGFICCTGCGRVLDDNIYSSDPTFVKTAGGQSQFSGNFIKDGQYSSYGRLGGDSVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSAREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSISNTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEATLTKRLIEFENTDSGSLTIEEFENKAKELEAEMQTIKVPPINAETKGIKGITDLLCEHKDMGSTHFAHGLCHSCYEEFVKLSGGIQGGSAPPAFQRAEKQRRQGALHKEQGKISFFDEEDEDDQYQIFEDTAIMETEKEKKMNWKAVKD

Protein Length: 420

Fln nts: ATGACAATACAGTGTCATTCACGTTACCCTGTCAAAAGGTTTTTCTCATCCTATTTGTGGTCGTTCGAACACAGCCAAAGCCACGAACCATTTTATACCCACAAGTCTGAAAGTCCGAAGCTTTTGATCGTTCGATCTTCCTTGACAGAGTTGCGCCTTGGCTTGATTTTTCATGCTGGCAGTACCTACGATTTTGGAAGCACGACCAGGGAGACACAGAGACACAGAGCGGGAAGAACCAGGAGCAGACTATTTGGAGAGGGTTCCACTTATAGACGGTTAACCGATTGATACCACGAGATAAAAATTGTATATTTTGGTGTTCACCAGAAATTGGAATTAGTCTCTTTTTGATGTGCTTGGGTGTAACTTTATTGTTGCCGAGTATGGAAAGACATTCTTGATCCTAATGATATGACATATGAGTGATCTATTCGGGGAAGTCCATCCAGTCATGATATTTGTGAGAGTCTAAAGGGATCCTTGAAAATTTTGATCAGCTTGGCATC_-_ATGGTGTGGTGCAGCTATTGTGGAAAGGATCAACCTACGGAGCGTGATGATATCAATGGATTTATATGTTGTACTGGTTGTGGGCGAGTTCTTGATGACAATATTTACTCATCAGATCCAACTTTTGTAAAAACTGCTGGGGGTCAGAGTCAATTTTCAGGGAACTTTATCAAGGATGGTCAATATAGCTCTTATGGACGTTTGGGCGGAGATTCAGTCCACGAGTATGGTTTCAAGTCCGATTCACATGAGAAAACTTTGGAAAAGGGAAGAGAAGAGATAGAAATTATTGCAGAAAGCCTGTCTGTTAGTGCCAGGGAGGATTCTGTTAATGCAGGGCATCGGTTATACATAATTGCAGTTGAACGCAACTTTACCAGAGGTAGACGGACAAAGCAAGTTGCAGCTGCCTGTCTTTATATCGTGTGTCGGCAAGAACAAAAACCATTTTTGCTTATTGATTTTTCAGATGTCTTGCAAATAAATGTCTATGTGCTAGGTGCTGTGTTTTTGCAACTTTGCAAATTATTGAGACTTGAGCAACATCCAATCATTCAAAAGCCAGTTGACCCCAGCCTGTTTATTCATCGTTTTGCTGATCGCTTAGTTGGGAGAGCAACAACTAGAAAGCAGTTTCATTCAATTTCAAATACTGCGTTGCGAATACTGGCAAGTATGAAACGTGATTGGATGCAGACTGGGAGAAAACCAAGTGGAGTGTGTGGTGCAGCACTATATATATCTGCACTCTCACATGGCTTTGGATGCACAAAAGCCGATGTTGTGAGTATCGTGCATATTTGTGAAGCAACATTGACAAAGCGGTTGATTGAGTTCGAAAATACAGATTCAGGCAGTTTGACTATAGAGGAGTTTGAAAACAAGGCCAAGGAGCTTGAGGCAGAAATGCAGACAATTAAAGTTCCACCAATAAACGCAGAGACTAAAGGAATAAAAGGCATAACAGATTTACTTTGTGAGCACAAGGACATGGGGTCCACCCATTTTGCACACGGACTTTGTCACTCCTGTTATGAAGAGTTTGTCAAGCTCTCTGGAGGTATTCAGGGAGGATCTGCACCACCTGCATTCCAGCGTGCTGAAAAACAGAGGAGACAGGGTGCCTTACATAAAGAACAAGGGAAAATATCTTTTTTTGATGAAGAAGATGAAGATGATCAGTATCAGATCTTTGAAGACACTGCTATAATGGAAACAGAGAAAGAAAAAAAAATGAATTGGAAAGCAGTCAAGGATG

Fln Alignment:

Contig2177___MVWCSYCGKDQPTERDDINGFICCTGCGRVLDDNIYSSDPTFVKTAGGQSQFSGNFIKDGQYSSYGRLGGDSVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSAREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSISNTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEATLTKRLIEFENTDSGSLTIEEFENKAKELEAEMQTIKVPPINAETKGIKGITDLLCEHKDMGSTHFAHGLCHSCYEEFVKLSGGIQGGSAPPAFQRAEKQRRQGALHKEQGKISFFXXXXXXDQYQI-----FEDTAIMETEKEKKMNWKAVKD
B8LQP4______________MVWCSYCGKDQPTERDDINGFICCTGCGRVLDDNIYSSDPTFVKTAGGQSQFSGNFIKDGQYSSYGRLGGDLVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSGREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEFENTDSGSLTIEEFESKAKELEAEMQTIKVPAINAETKGIKGITDLLCEHKDTGSAHFAHGLCHSCYEEFVKLSGGIQGGSAPPAFQRAEKQRKEDALHKKQDKLLFFDEEDEEDQYQIGTQKCFEDTARMETEKEKQLNQKAVQD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
209		75		25	0.996473
1378		85		14	0.993533
1488	90		10		0.90298
1540		33		66	1.0
1559		58		41	1.0
1634		72		27	1.0
1687			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain