SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2176

Length: 1291 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2176

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative acid phosphatase (Fragment) n=1 Tax=Pinus pinaster RepID=Q8RVJ4_PINPS	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Putative acid phosphatase	-	-	7.387e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	4.888e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		4.888e-15	%
Sma3	Riboflavin metabolism	00740		4.888e-15	%

Source	Gene names
Sma3	57h21.11; ACP; APS-1; APS-1(1); APS-AA2; APS1; AT4g25150; At1g04040; At2g38600; At4g25150; At4g29260; At4g29270; At5g44020; At5g44020/MRH10.13; At5g51260; B1007D10.12; B1140B01.11; B15-3-5; F13M23.290; F21M11.2; GSVIVT00016639001; GSVIVT00025255001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein	IPR011267	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29270.1	HAD superfamily, subfamily IIIB acid phosphatase chr4:14423797-14424848 REVERSE LENGTH=256	50%
RefSeq	Arabidopsis thaliana	NP_194656.1	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002309231.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA42

Fln msg:

Fln protein: MAVMLASATMFPFLLFLLLSGAAADGLPKAKLCGRSASRCPAWRLSVESGNLKDWNIVPLKCVGYVGKYMLAEGQYWEDSKVAALTILDYVKTLKLAGDGMDAWVFDIDETLLSNIPYYQHHDFGGKAFDSKTFEDWVLKMKAPALPSSLLLYNSLLARGFKIFLLTGRDESLRNGTVHNLFQAGYKGWAGLILRGENDQGTSAGVYKPEKRGELVKKGYRLWGSVGDQWNDLTGPYQASRSFKLPNPMYYVS*

Protein Length: 255

Fln nts: ATACCACTGCTTGCAGTGGTATCAACGCAGAGTACGCGGGGACAGTGGGGACTGCGGTGAACAATTTCCATGTTCTTGAAGGTCCTGCGTGGTGTTATATAACACCCTGCTCCTTTCTATTCAGCACAAGCTAAGCATCAGATAAACCTTAGTTCCTACC_-_ATGGCAGTCATGTTAGCATCGGCCACCATGTTCCCCTTTCTTTTGTTCCTCCTGCTCAGCGGGGCCGCAGCCGATGGGTTGCCCAAGGCGAAGCTATGCGGCCGTTCTGCCTCCCGGTGCCCGGCTTGGAGATTGAGCGTGGAGAGCGGCAACCTTAAAGATTGGAATATCGTGCCATTAAAATGCGTCGGCTACGTGGGGAAATATATGTTGGCAGAAGGGCAGTATTGGGAGGATTCCAAAGTAGCAGCGTTAACCATTCTGGATTATGTCAAAACGCTGAAACTTGCAGGAGATGGGATGGATGCGTGGGTTTTCGATATTGATGAAACTCTTCTATCCAATATCCCTTATTACCAACACCACGATTTTGGGGGCAAGGCTTTCGATTCGAAGACATTTGAAGATTGGGTATTAAAGATGAAAGCACCTGCGCTGCCGTCGTCTCTGCTGCTTTATAATAGTTTGTTAGCTCGGGGTTTCAAAATCTTCCTTCTAACTGGCCGAGACGAATCTCTGCGGAATGGAACGGTCCATAATCTGTTCCAGGCCGGTTACAAGGGCTGGGCGGGTCTGATATTGAGGGGGGAGAACGATCAGGGCACCTCGGCGGGTGTGTACAAGCCCGAGAAGAGGGGAGAACTGGTGAAGAAAGGCTATCGTTTATGGGGAAGTGTGGGTGATCAGTGGAACGATCTGACCGGACCCTACCAGGCATCGCGCTCCTTCAAGCTTCCCAATCCTATGTATTACGTCAGTTGA___AATAGCTTGCAAAGTTTCGTTTCAGAAATGCGAGTTTATCAAATGTCTTCTCCCACCATGTCTGTTGGTAGTAAAAAATAGTGTGTTAGTAGATGGGCTGACCATGCTCATGGTTCTACCCTTCAGGCATGCCTTATTTGTGATCGGTTAACAATGTCACTATCGATGCCAATGTTAGTTTTGGGTTTTCAATCATCCTTTTGTTAATGGCAGGTTTTCTGTTTGTAACAATGGGAAGAAATTATTTGAAAGTGGATATTACGAAATTTTCTCTATAAAACGTCTACAAAATGGGAGTGTCTTATGTCACTAATATGATCTTGATCACTGTAATAATTTATGTGACCTGCTCTGCTCTTTTTTGGCTTT

Fln Alignment:

Contig2176___MAVMLASATMFPXXXXXXXSG-AAADGLPKAKLCGRSASRCPAWRLSVESGNLKDWNIVPLKCVGYVGKYMLAEGQYWEDSKVAALTILDYVKTLKLAGDGMDAWVFDIDETLLSNIPYYQHHDFGGKAFDSKTFEDWVLKMKXXXXXXXXXXXXXXXXRGFKIFLLTGRDESLRNGTVHNLFQAGYKGWAGLILRGENDQGTSAGVYKPEKRGELVKKGYRLWGSVGDQWNDLTGPYQASRSFKLPNPMYYVS
D5AA42______________MAFVLASVAIFPFLLFLLLLGTASANGLSKSKLSGRSASRCEGWRLSVESGNLRDWDVVPSKCVGYVQKYMMTAGQYWEDSKVAVFTILEYVKTLKLVGDGKDAWVFDIDETLLSNIPYYQQHEYGGKAFDSKTFEAWVLEMKSPALPSSLLLYNRLLARGFKIFLLTGRDESQRNGTVHNLFQAGYKGWAGLILRGVNEQGSQASAYKPEKRAELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYIS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
975		57		42	1.0
979		42		57	1.0
1000	42		57		1.0
1001	42		57		1.0
1004			42	57	1.0
1030		8		91	1.0
1048	8		91		1.0
1100	66		33		1.0
1119		42		57	1.0
1120		57		42	1.0
1182		25		75	0.996473
1186			66	33	0.997452
1190	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain