SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2160

Length: 1324 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2160

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative pollen specific LIM domain-containing protein [Solanum lycopersicum]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, LIM-type	IPR001781	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10200.1	WLIM1 GATA type zinc finger transcription factor family protein chr1:3346677-3347763 REVERSE LENGTH=190	71%
RefSeq	Arabidopsis thaliana	NP_172491.1	transcription factor lim1 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002321571.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSQ9

Fln msg:

Fln protein: MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKMHENENRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLSKATPTKGVTENSDTDDK*

Protein Length: 195

Fln nts: ACCACTGCTTAGCAGAGATTTAAATGCTTTTTTGAAATCCGGTTACTCGCAAGATTATCAAGCGGGACTGTAGCCGAAGCTTTGAGAGGTTGAAATTCAGACCTTGCTCCCAACTGGTCTGCTGAAACAAAATCCATTATTGAGCTAGGTTTAGAATCGGGTTTGCTGGTCATCTGGGAGAGGCGATCTATTCAGCTTCGCAGGCCCCCGAAG_-_ATGGCGTTCGCCGGCACAACCCAGAAGTGCAAGGCATGTGAAAAGACGGTCTATTTGGTTGATCAATTGACAGCTGATAATTCTGTTTTTCACAAATCCTGTTTCCGCTGCCATCACTGCAATGGAACCTTAAAGCTTAGCAACTATTCGTCATTTGAGGGAGTTCTATATTGCAAACCTCATTTTGACCAGCTGTTTAAGAGAACAGGAAGTTTGGATAAAAGTTTTGAAGCCATTCCTAGAGCATCAAGAAATGACAAGATGCATGAGAATGAGAACAGGACACCTAGTAGGGTATCAGCATTGTTTTCCGGTACACAGGATAAATGTGTTGCATGTGGGAAGACAGTGTACCCCATTGAGAAGGTTGCTGTTGATGGTACATCATACCACCGACCTTGCTTCAAGTGCTGTCATGGTGGTTGTGTCATCAGCCCCTCAAATTATGTTGCTCATGAAGGCAGGCTATATTGTAGGCATCATAGCTCTCAACTTTTTAGGGAGAAAGGTAACTTCAGCCAGCTTTCAAAGGCAACACCTACAAAAGGGGTGACTGAGAACTCAGACACAGACGACAAGTGA___TCATTCGGGCCAGATTTTTGTTGAGAGAGTTGTAGTGTGTAATTGATTCATTTCATACATTTGATATGCAAGCCTGTACAATAGCCTGTGACTGTTAAGGGCATTCTTTTGTCTCCCTGTTGCTATTTGGGTTTCCGGTGTGTTCATTTTCACTTATTTTTGTGTTTTAGCTGGAGGAATTTGAGAGGGTAGAATTGTGTCATCGCTATGGCTTGTGCATGACTCATAAGCCAGCAGTTGAGACTTTTATTTATTAGTTATAGTACTATATCTTGTCGAGTTCTCAATAAAAGATAGTGTTATGCTGTTGGGCAGCATCCTAGAGTGTTTTGTAATGTAGGCATAATAGTCTCAATGTTTCTATAAGGTATTTGCCAATGTTTGTTGCAACATGTTTTGAGTTTTAGTTGCAAAAGATAGTGTTATGCTGTTGAACAGCATCCTAGAGTGCTTTGTAATGTAAACATAATAATCTCGATGTTTCTATAATAAGGTATTTTACCAATTTTGCTTGTGAGAAGTCGTGTGT

Fln Alignment:

Contig2160___MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKMHENENRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLSKATPTKGVTENSDTDDK
A9NSQ9______________MAFAGTTQKCKACEKTVYLVDQLTADNSVYHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKTQENESKTPNRVSTMFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLAKGTPTKGVTEN--TDDK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
110		75		25	0.996473
114		75	25		0.996473
627		25		75	0.996473
635	20		80		0.995493
637			20	80	0.995493
639			20	80	0.995493
1054		3		96	0.993037
1271		10		89	1.0
1293	13			13	0.999956
1298	33	16			1.0
1299	20	20			0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain