SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2155

Length: 2737 nt

UniGene Fasta

>sp_v3.0_unigene2155
TCTAATGAAGATTGCAAAAGAGTCGGCACCCTCTGATGAAAAAACCAAAGAATCAGTCCAGAGTACTGAAACAGTTGAAGATTCTTATTTTGTAGGGGGTCTTGCAGATAAATTTATGTGGGAGTGCCCAGATTCATCACCTGATAGGCCTACATTGCCTGTGTCTTCATTAAAGAGAAAATCGGCTTCAGTGGATGGCCCAAATAGGCGTCAGAGAGTAGATGGCATCGGTTCAGGAGCTGGGGCAGAAGCCACGGCCACTGGCACGTTTGTTCGTACAGGAGGTACAACTGTTTCCTCATCTGGTTTAACTAGAAGAGACATGTTTCGGCATCGCAAACCTAATACTAGTAGACCACCTTCTATGCATGTTGATGATTATGTTGCAAGAGAGAGAAACAATGATGGTATGAGTAGCAGCTCCAATGTTGTTACTGTTCAGCGTGGAGGGTCTACTGGTGGTAGGCCACCATCTATTCACGTGGATGAATTTATGGCTAGACAACGGGAACGCCAACAGCCGGTAGCTTCAGCTGGTGGAGACCTGCAAAAACCTGTGCAGACACTGCCACCTGAGACTGAGAGCAGTGTTGATAAAAATACTAAATCTAGAGAATTGAAGTCTCACCTTGAAGATGATTTACAGGAAATCAATATTGAGTTGGAAGTTGTTTCTGAATCAGAAGACATGTTGCAGTTCCCACAGTCTGATGACTTTCTGCCGTCTGCACCAGTGAACTTACCTGAGGAGAATTCACCTGAATCTCTTCTTGATGATGCAGAACATAACCCTGGCAGTTCTCAACATTTTATTCCGGTGAGCAAGGAAACAAAAATGGATGCAGTTGAAGGTGTTAATTCTGTAGGCCCAGTTTCTAGGGACCCTGTTACACAATCTGAGGGTGGTATTGTCAGACATGAAAGCCTTACTCCAGACAAAGGAAAAGGAAAGCAAAGTCCAAGTGGAGAAACAACATTCCCTCGAGAGCAATTTGATAACAGAATACCCAATTCGATGCCCATAACATCTAATTGCTATGAGACACCTGTTGCATCTAAACCACCAGAGATGACAATACCATTTTATGATCAAAGATCTGTATCGGGAGTTATGCAAGCAGGAGAACAGGGGCCTATGCCTTTCCCTGTTGTTCATCACAGATCCACTCAACCACCGGCTGGTCCTGGCCCAATGTTAACTGTAACCCAACCACATTTTGAACAAAAAAGTCATTTACATGCACCACCACTGCCACCTTTGCCACCACCTCCATCAGTTCCTTCTGGTTTAACTCCTCAAATGGTGGAAGCCAGTCCTAGCCATGCATCTCCTTACATACATTCCACAAGAGATGTCCAGCCTCCTCTCCCTTCAGGTTCACCTTTCCAGACATTTGACTCTGCTACAAATAGTGCAGTTCCACCATTGCCTGGAAGAGATCAAAAACCAACTGCTCCAAAAGATTACTATATGGAAGGGATAGGCAGCAGCATGAATATCAGTGTGGCACCACCATTACCTCCATCCAGTACTCGTTCTCTCTTAGAGGTTCCTCTTCGTCCACCTCCACCTGTACAGTTCCATCCAGAACATCAACGGCCAGCTAGTTATGGTTCCGTTGCCCCAGCCACCCCTCCTCGCCCTCCTTTTGATACTTCAACAACTCCATGGGCTAGTGTCTCAACAACTGCTAGAATGCCTGATGAGACCATTGCTTCAGCAAGACCTCCTCCACCTCTTCCTCCCACACCTCCACCATTTTCTGCCCCTCAAGTTGTGCAGGCATCTCCACAAACATCAACTGTTCATCCTCTATCTGGTATGTATTTTCAGCCTACTACAGCTATCCCACTACCTCCACCAACATCCTCTGGTGATAAGGTATTTGGAAGCTTTTCTACATCCAGTGTCGGTCAAAGTTCCACCTCTCAGTCTCATCCTTTACCTCCTGCTTTTGTACCTCCTTTGCCTCCTGGTAGGCCTACAACATTGCCAGGAAACCTTCCTGGCAGCGTATCAACTCAACAGCAGGGACTTAGCCAACAAACTCATCCCCAACATGTTCAGCCAGTTCAGCCCCCTCTGCAACCACGACAGCCTCCTCAACCACCACAACCACCTCGTCCACCTCCACCTCAGCCTCCTCAGCAGCCACGTCCCCTCTTTCAGCCACAGCAACCACTGGAACAGAGACCGCAGACTCATATTCAGTCATCAATAAATCAACATGTACAATTTCAGCCACAACCACCTCCACTGCAGCAAAATTATCCAGCACAAAGTGTGCAGCAGCACCCACACCCACTTCAGCAGCAAGCCCAACAATCTTATTATCAACACCAGCATCAGGATCATCAGCAACAACACCATGATCAAGGGGAACATGTTCATCCACAATATCATCATCCACAGGTTGAAAATGTTCAACAGCAAGAATCAGGGTTGACGCTACAACAACATTTTAGTTCTCCTGAAGCCATTCAGGCTCTATTGGGCGATCAAGAAAGACTTCGCCAGCTTTTGGAACAGCACCCAAAATTGATGCAAATGCTCCAGGAAAGATTAAACCAATTGTGATAGCAGTTATTACCTATTGTTGAATGGGCTACAACTAAATGGGAACCATCCGTTAAATTATCAACAGAACTCCCTTCTGGAATGAGGTTTTCACTGGAAGGAAGAATAGCAGTTGCAGGAGCATATAAGATGCAGAGAGAGAGAGAGAGAGAGAGAGAG

Ace file of the UniGene sp_v3.0_unigene2155

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAT1 multi-domain protein	-	-	2.0e-27	22%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	40%

Source	Gene names
Sma3	PHYPADRAFT_165952;

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HPK2

Fln msg: your sequence is shorter than subject: 859 - 1709

Fln protein: LMKIAKESAPSDEKTKESVQSTETVEDSYFVGGLADKFMWECPDSSPDRPTLPVSSLKRKSASVDGPNRRQRVDGIGSGAGAEATATGTFVRTGGTTVSSSGLTRRDMFRHRKPNTSRPPSMHVDDYVARERNNDGMSSSSNVVTVQRGGSTGGRPPSIHVDEFMARQRERQQPVASAGGDLQKPVQTLPPETESSVDKNTKSRELKSHLEDDLQEINIELEVVSESEDMLQFPQSDDFLPSAPVNLPEENSPESLLDDAEHNPGSSQHFIPVSKETKMDAVEGVNSVGPVSRDPVTQSEGGIVRHESLTPDKGKGKQSPSGETTFPREQFDNRIPNSMPITSNCYETPVASKPPEMTIPFYDQRSVSGVMQAGEQGPMPFPVVHHRSTQPPAGPGPMLTVTQPHFEQKSHLHAPPLPPLPPPPSVPSGLTPQMVEASPSHASPYIHSTRDVQPPLPSGSPFQTFDSATNSAVPPLPGRDQKPTAPKDYYMEGIGSSMNISVAPPLPPSSTRSLLEVPLRPPPPVQFHPEHQRPASYGSVAPATPPRPPFDTSTTPWASVSTTARMPDETIASARPPPPLPPTPPPFSAPQVVQASPQTSTVHPLSGMYFQPTTAIPLPPPTSSGDKVFGSFSTSSVGQSSTSQSHPLPPAFVPPLPPGRPTTLPGNLPGSVSTQQQGLSQQTHPQHVQPVQPPLQPRQPPQPPQPPRPPPPQPPQQPRPLFQPQQPLEQRPQTHIQSSINQHVQFQPQPPPLQQNYPAQSVQQHPHPLQQQAQQSYYQHQHQDHQQQHHDQGEHVHPQYHHPQVENVQQQESGLTLQQHFSSPEAIQALLGDQERLRQLLEQHPKLMQMLQERLNQL*

Protein Length: 860

Fln nts: TCTAATGAAGATTGCAAAAGAGTCGGCACCCTCTGATGAAAAAACCAAAGAATCAGTCCAGAGTACTGAAACAGTTGAAGATTCTTATTTTGTAGGGGGTCTTGCAGATAAATTTATGTGGGAGTGCCCAGATTCATCACCTGATAGGCCTACATTGCCTGTGTCTTCATTAAAGAGAAAATCGGCTTCAGTGGATGGCCCAAATAGGCGTCAGAGAGTAGATGGCATCGGTTCAGGAGCTGGGGCAGAAGCCACGGCCACTGGCACGTTTGTTCGTACAGGAGGTACAACTGTTTCCTCATCTGGTTTAACTAGAAGAGACATGTTTCGGCATCGCAAACCTAATACTAGTAGACCACCTTCTATGCATGTTGATGATTATGTTGCAAGAGAGAGAAACAATGATGGTATGAGTAGCAGCTCCAATGTTGTTACTGTTCAGCGTGGAGGGTCTACTGGTGGTAGGCCACCATCTATTCACGTGGATGAATTTATGGCTAGACAACGGGAACGCCAACAGCCGGTAGCTTCAGCTGGTGGAGACCTGCAAAAACCTGTGCAGACACTGCCACCTGAGACTGAGAGCAGTGTTGATAAAAATACTAAATCTAGAGAATTGAAGTCTCACCTTGAAGATGATTTACAGGAAATCAATATTGAGTTGGAAGTTGTTTCTGAATCAGAAGACATGTTGCAGTTCCCACAGTCTGATGACTTTCTGCCGTCTGCACCAGTGAACTTACCTGAGGAGAATTCACCTGAATCTCTTCTTGATGATGCAGAACATAACCCTGGCAGTTCTCAACATTTTATTCCGGTGAGCAAGGAAACAAAAATGGATGCAGTTGAAGGTGTTAATTCTGTAGGCCCAGTTTCTAGGGACCCTGTTACACAATCTGAGGGTGGTATTGTCAGACATGAAAGCCTTACTCCAGACAAAGGAAAAGGAAAGCAAAGTCCAAGTGGAGAAACAACATTCCCTCGAGAGCAATTTGATAACAGAATACCCAATTCGATGCCCATAACATCTAATTGCTATGAGACACCTGTTGCATCTAAACCACCAGAGATGACAATACCATTTTATGATCAAAGATCTGTATCGGGAGTTATGCAAGCAGGAGAACAGGGGCCTATGCCTTTCCCTGTTGTTCATCACAGATCCACTCAACCACCGGCTGGTCCTGGCCCAATGTTAACTGTAACCCAACCACATTTTGAACAAAAAAGTCATTTACATGCACCACCACTGCCACCTTTGCCACCACCTCCATCAGTTCCTTCTGGTTTAACTCCTCAAATGGTGGAAGCCAGTCCTAGCCATGCATCTCCTTACATACATTCCACAAGAGATGTCCAGCCTCCTCTCCCTTCAGGTTCACCTTTCCAGACATTTGACTCTGCTACAAATAGTGCAGTTCCACCATTGCCTGGAAGAGATCAAAAACCAACTGCTCCAAAAGATTACTATATGGAAGGGATAGGCAGCAGCATGAATATCAGTGTGGCACCACCATTACCTCCATCCAGTACTCGTTCTCTCTTAGAGGTTCCTCTTCGTCCACCTCCACCTGTACAGTTCCATCCAGAACATCAACGGCCAGCTAGTTATGGTTCCGTTGCCCCAGCCACCCCTCCTCGCCCTCCTTTTGATACTTCAACAACTCCATGGGCTAGTGTCTCAACAACTGCTAGAATGCCTGATGAGACCATTGCTTCAGCAAGACCTCCTCCACCTCTTCCTCCCACACCTCCACCATTTTCTGCCCCTCAAGTTGTGCAGGCATCTCCACAAACATCAACTGTTCATCCTCTATCTGGTATGTATTTTCAGCCTACTACAGCTATCCCACTACCTCCACCAACATCCTCTGGTGATAAGGTATTTGGAAGCTTTTCTACATCCAGTGTCGGTCAAAGTTCCACCTCTCAGTCTCATCCTTTACCTCCTGCTTTTGTACCTCCTTTGCCTCCTGGTAGGCCTACAACATTGCCAGGAAACCTTCCTGGCAGCGTATCAACTCAACAGCAGGGACTTAGCCAACAAACTCATCCCCAACATGTTCAGCCAGTTCAGCCCCCTCTGCAACCACGACAGCCTCCTCAACCACCACAACCACCTCGTCCACCTCCACCTCAGCCTCCTCAGCAGCCACGTCCCCTCTTTCAGCCACAGCAACCACTGGAACAGAGACCGCAGACTCATATTCAGTCATCAATAAATCAACATGTACAATTTCAGCCACAACCACCTCCACTGCAGCAAAATTATCCAGCACAAAGTGTGCAGCAGCACCCACACCCACTTCAGCAGCAAGCCCAACAATCTTATTATCAACACCAGCATCAGGATCATCAGCAACAACACCATGATCAAGGGGAACATGTTCATCCACAATATCATCATCCACAGGTTGAAAATGTTCAACAGCAAGAATCAGGGTTGACGCTACAACAACATTTTAGTTCTCCTGAAGCCATTCAGGCTCTATTGGGCGATCAAGAAAGACTTCGCCAGCTTTTGGAACAGCACCCAAAATTGATGCAAATGCTCCAGGAAAGATTAAACCAATTGTGA___TAGCAGTTATTACCTATTGTTGAATGGGCTACAACTAAATGGGAACCATCCGTTAAATTATCAACAGAACTCCCTTCTGGAATGAGGTTTTCACTGGAAGGAAGAATAGCAGTTGCAGGAGCATATAAGATGCAGAGAGAGAGAGAGAGAGAGAGAGAG

Fln Alignment:

Contig2155___STETVEDSYFVGGLADKFMWECPDSSPDRPTLPVSSLKRKSASVDGPNRRQRVDGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMFRHRKPNTSRPPSMHVDDYVARERNNDGMSSSSNVVTVQRGGSTGGRPPSIHVDEFMARQRERQQPVASAGGDLQKPVQTLPPETESSVDKNTKSRELKSHLEDDLQEINIELE-VVSESEDMLQFPQSDDFLPSAPVNLPEENSPESLLDDAEHNPGSSQHFIPVSKETKMDAVEGVNSVGPVSRDPVTQSEGGIVRHESLTPDKGKGKQSPSGETTFPREQFDNRIPNSMPITSNCYETPVASKPPEMTIPFYDQRSVSGVMQAGEQGPMPFPVVHHRSTQPPAGPGPMLTVTQPHFEQKSHLHAXXXXXXXXXXSVPSGLTPQMVEASPSHASPYIHSTRDVQPPLPSGSPFQT--FDSATNSA
F6HPK2______________SAEKVEDYCCLGGLEDKFLWECPETLPDRLLQTTLPAKRKMSSLEGPSRRARGDN----SPAETVAQGAFSRALGPPSASSGPSRRDTFRLRKPNTSRPPSMHVDDYVARERNVDGVSNS-NVIAVQRIGTTGGRPPSIHVDEFMARQRERQNPVVSAVGEVAAQAKNAAPENDADMEKFNKSRQIKADLDDDLQGIDIVFDGEESEPDEKLPFPQPDDNLQQPASVIVEQSSPRSIVEETESDVNENSQFSRLGTPLALNVNENPESEFS-SRMSVSRPERPLTREPSVSSEKKYFEQS---------DDMKNVIPAMTPSRYDSAGAAISSGFPAST---YGKASVSSVPLMVD-SRMVQPNFYLKNSSQQAGNMALATGSQGLYDQKFMLNQPPLPPMPPPPTI-SPIISQAPDPALSQSSSFVNTATDVQPPLPTAFQVQSEYLSAFTNSS

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
836	75		25		0.996473
1041			66	33	0.997452
1227	83	16			0.994512
1232	83		16		0.994512
1233	83			16	0.994512
1234	83	16			0.994512
1237		83	16		0.994512
1239		16		83	0.994512
1242	83		16		0.994512
1243		83	16		0.994512
1244	80	20			0.995493
1562			33	66	0.997452
1568		66	33		0.997452
1574		66		33	0.997452
1575	66		33		0.997452
1576		66	33		0.997452
1584		33	66		0.997452
1612	75	25			0.996473
1615		25		75	0.996473
1616	75		25		0.996473
1619		25	75		0.996473
1620		25		75	0.996473
1622		75		25	0.996473
1623		75	25		0.996473
1625		25		75	0.996473
1628		75		25	0.996473
1630	16	50	33		1.0
1631		66		33	1.0
1632	50	33			1.0
1633			83	16	0.994512
1634		66		33	1.0
1635	16	50	33		1.0
1639		66		33	1.0
1640		66		33	1.0
1641			33	66	1.0
1642		66	33		1.0
1645		71	28		1.0
1646			71	28	1.0
1647		85		14	0.993533
1648	28	71			1.0
1649		85	14		0.993533
1651		85	14		0.993533
1652	42	57			1.0
1653		14		85	0.993533
1654		14		85	0.993533
1660	85		14		0.993533
1666	85	14			0.993533
1735		87		12	0.992554
1736		87	12		0.992554
1737			12	87	0.992554
1739		87		12	0.992554
1740	87		12		0.992554
1741		87		12	0.992554
1743	12			87	0.992554
1748	12	87			0.992554
1888			83	16	0.999991
1957			90	10	0.90298
1959			10	90	0.90298
1960		10		90	0.90298
1973		11		88	0.923564
2107		83		16	0.994512
2109			16	83	0.994512
2445	90			10	0.90298
2624			90	10	0.90298
2685	16			83	0.994512
2687			83	16	0.994512
2688	16			83	0.994512
2689	16	83			0.994512
2691	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2712	2737	AG AG AG AG AG AG AG AG AG AG AG AG AG	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain