SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2154

Length: 2549 nt

UniGene Fasta

>sp_v3.0_unigene2154
CCCACGATCGCCCATCGTCCCCTCCGCCTCCGCCTCCTCCTCCTTCCCCACCGCCACCACCGCTACCATCTTCCTCACTGCCACCACCTCCTCCACCCCCTCAGCCCAACTCATCAGCCTCAGCCTCTGTTAATCTTCCTAATTCTAATCCAGTTAAGCAGCACAAGGAAATTCAGCCTCCTGCTGCCGTGCCTAATCATGGAATCCGAGCACCTCCCAAAGAAACAAATGTTTCAGGAAGTGGGTGGGGTTCGTCTGGTTCTGCTCAGGCCAAGCCTTTGATGACTCCTAGTAAGCATAGGACTCCATCATTGCCTTCTGCTGCTAAACCCCCTCAAATGCCTGGTGGACCCCAATCGGCAGAACCGAACAGGGGTGAGACAGAGGAAGAGAAGCGGTTGCGGAAGAAAAGAGAGTACGAGCAGAGGAAAGAAGAAGAAAAACAACGGCGTGAAAAAGAGGCCAATGCTGCTCTCTTGCGAAAAAACCAGTTGGGATCTTCTTTACAGCCAGCAAAAGTTACAGCCGGATCAACACCAAGAGGAGATGGCAGGGTGGAAAGGAAACCTCAGTATGTAGGTGCTGAGAAGATCGATAATAAACTCAAGAAACCGACCACATTCTTATGTAAACTAAAATTTAGAAATGAGCTGCCAGATCCAACAGCACAACCAAAATTGTTATCCATCAGCACAAATAAAGATCGATATGTAAAATACACTATTACATCTTTGGAGAAAACACACAAACCAAAGCTATTTGTTGAGCCTGATCTTGGGATTCCCCTTGATCTCCTTGACATCAGTGTCTACAACCCCCCAAAGGTAAAGCAGACTATGGATCCAGAAGATGAGGAACTTTTGCGTGATGATGAAATGAAAACACCAAATAAACTAGATGGTATTAGGAAGAAGGATAGACCTACTGATAAAGGTGTTTCTTGGCTGGTAAAAACACAATATATTTCTCCAATCAGCCTTGAATCTACTAAGCAGTCTTTAACTGAAAGGCAAATTAAGGAGTTGCGAGAAGCTAGGGAAGGACGCAATATCTTTTTGGAGAGTCTCAATAATAGGGAACAACAAATTCAGGCAATTGAAGAGTCATTTCGGGTATCCAAATTACGTCCAGTGCATCAAACTAAACCTGGCCTTGAGCCAGAGGAAATCCTTCCACTCCTTCCAGACTTTAATCGTTGGGATGATCAACTTGTTCTTGCAACGTTTGATGGTGAAGCAACAGCTGATACAGAGAACTATAGCAAGTTGGAAGCATCCGTACGCGATGAAGTGGAGTCACGGGCTGTCATGAAGAGTTTTGTTCATGCTGGTTCAGATCCAACCAAACCAGAGAAGTTTTTGTCATACATGGTACCTGCAGTGGAGGAGCTGATGAAGGATATGTATGATGAAGATGATGAAGAGATGTCCTACACATGGTTAAGGGAATATCATTGGGAGTTGCGTGCAGATGATGCTAACTCTCCAGTAACTTATGTTCTTGTGTTTGGCGAGGATGGTGCCAGATACCTGCCTCTTCCGACAAAGTTGGTTCTACAGAAGAGAAGGTCAAAGGAGGGAAGGTCTAATGATGACATTGAAAGCCAGTATCCGGTACCTTCAAGGGTGTCTATAAGGAATCGATCCCTTACACAAAAGGAGGAAGAACAGCGAGACACTGGTAGAGCAAGGCTTATGGAGGGCCAAGCAAATACTGTGGGAAATATCAGTGGTTCAAAGCGCATGGCATCTGATGAAGACATTCATAGATCTAGACATAAATTAGGGCGAGTGGAAGAAACTGATCACAACCTGAGTGGAGATGAATATTTGTCTGAGTAGTTTTACAGAAAATCAAAGGCTCATTGCTTTCCTCCAAGAATCAAACAAGAAATGTGGATCCCTGTATGTTTTGTATGGCCTGTGAGAGAATTGTACATGCAGGTGAGCCTACCTACTTAATGCAAATGCCATGCTGTTGGGGAATTTGATGCCACTTTATAGAGGTGTTTTGAAACTGTTACGTCACACTCAGCAGAAGTATCCTTAAAATTCAATAATTATGAGATTAGCTGTAGCTCTTGCAAGCTGTGTTTTGGAGCCAATATTAATTCTTTATCTTCTGCCTTCTGATATTCAAGAATCTGTAGCTATGTCAACTCTTAAGATTTACACATAACAGTTCATACTTTGGAGGGATAAATAAATGTCTCTGTATCTACGAATACATCTCTCCTGTGCTTTTTGCGGGAATATATTTTGAGAGAAAATAGAGTAATGTATCTATCAGGAGGCAAGATTTATGAAATTTCCTATCCAAACACATGCATTTCTTTTGAAACCATGGGTTCAGATTCTTTCATTTCTATTTCTCAACATAATGCTAGGCTGGAAACTTGCATGCTGAAGGCGTGAGCTATTATCTCAATGTTGAAATGGCAATATGACACTGTTGAACGAACATTATATATCTGTAAACTGGCTTGTGGAAGTCAAACCTTTTAGTTCTCGAGTGCTTTGATTCACCATTTTGGAGAAGAATTGAAATCC

Ace file of the UniGene sp_v3.0_unigene2154

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03985, Paf1, Paf1	-	-	0.0	28%
FL-Next	tr=Os08g0157100 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	55%
Sma3	PAF1 complex component	-	-	1.032e-08	-

Source	Gene names
Sma3	CHLREDRAFT_187652; F19K16.29; GAS31; GSVIVT00034302001; Os08g0157100; OsI_27878; OsJ_26103; P0438H08.25; PAFA1501; PAFA901; PAFA902; PHYPADRAFT_72764; POPTRDRAFT_553771; POPTRDRAFT_751858; RCOM_1489440;

Source	GOs	Term	Type	Identity
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	histone methylation	GO:0016571	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pistil-specific extensin-like protein	IPR003882	-	0.0	-
Sma3	RNA polymerase II-associated, Paf1	IPR007133	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79730.1	ELF7 hydroxyproline-rich glycoprotein family protein chr1:30000743-30003969 REVERSE LENGTH=589	56%
RefSeq	Arabidopsis thaliana	NP_178091.2	hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002303312.1	PAF1 complex component [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q6ZD92

Fln msg: your sequence is longer than subject: 520 - 451

Fln protein: MTPSKHRTPSLPSAAKPPQMPGGPQSAEPNRGETEEEKRLRKKREYEQRKEEEKQRREKEANAALLRKNQLGSSLQPAKVTAGSTPRGDGRVERKPQYVGAEKIDNKLKKPTTFLCKLKFRNELPDPTAQPKLLSISTNKDRYVKYTITSLEKTHKPKLFVEPDLGIPLDLLDISVYNPPKVKQTMDPEDEELLRDDEMKTPNKLDGIRKKDRPTDKGVSWLVKTQYISPISLESTKQSLTERQIKELREAREGRNIFLESLNNREQQIQAIEESFRVSKLRPVHQTKPGLEPEEILPLLPDFNRWDDQLVLATFDGEATADTENYSKLEASVRDEVESRAVMKSFVHAGSDPTKPEKFLSYMVPAVEELMKDMYDEDDEEMSYTWLREYHWELRADDANSPVTYVLVFGEDGARYLPLPTKLVLQKRRSKEGRSNDDIESQYPVPSRVSIRNRSLTQKEEEQRDTGRARLMEGQANTVGNISGSKRMASDEDIHRSRHKLGRVEETDHNLSGDEYLSE*

Protein Length: 521

Fln nts: CCCACGATCGCCCATCGTCCCCTCCGCCTCCGCCTCCTCCTCCTTCCCCACCGCCACCACCGCTACCATCTTCCTCACTGCCACCACCTCCTCCACCCCCTCAGCCCAACTCATCAGCCTCAGCCTCTGTTAATCTTCCTAATTCTAATCCAGTTAAGCAGCACAAGGAAATTCAGCCTCCTGCTGCCGTGCCTAATCATGGAATCCGAGCACCTCCCAAAGAAACAAATGTTTCAGGAAGTGGGTGGGGTTCGTCTGGTTCTGCTCAGGCCAAGCCTTTG_-_ATGACTCCTAGTAAGCATAGGACTCCATCATTGCCTTCTGCTGCTAAACCCCCTCAAATGCCTGGTGGACCCCAATCGGCAGAACCGAACAGGGGTGAGACAGAGGAAGAGAAGCGGTTGCGGAAGAAAAGAGAGTACGAGCAGAGGAAAGAAGAAGAAAAACAACGGCGTGAAAAAGAGGCCAATGCTGCTCTCTTGCGAAAAAACCAGTTGGGATCTTCTTTACAGCCAGCAAAAGTTACAGCCGGATCAACACCAAGAGGAGATGGCAGGGTGGAAAGGAAACCTCAGTATGTAGGTGCTGAGAAGATCGATAATAAACTCAAGAAACCGACCACATTCTTATGTAAACTAAAATTTAGAAATGAGCTGCCAGATCCAACAGCACAACCAAAATTGTTATCCATCAGCACAAATAAAGATCGATATGTAAAATACACTATTACATCTTTGGAGAAAACACACAAACCAAAGCTATTTGTTGAGCCTGATCTTGGGATTCCCCTTGATCTCCTTGACATCAGTGTCTACAACCCCCCAAAGGTAAAGCAGACTATGGATCCAGAAGATGAGGAACTTTTGCGTGATGATGAAATGAAAACACCAAATAAACTAGATGGTATTAGGAAGAAGGATAGACCTACTGATAAAGGTGTTTCTTGGCTGGTAAAAACACAATATATTTCTCCAATCAGCCTTGAATCTACTAAGCAGTCTTTAACTGAAAGGCAAATTAAGGAGTTGCGAGAAGCTAGGGAAGGACGCAATATCTTTTTGGAGAGTCTCAATAATAGGGAACAACAAATTCAGGCAATTGAAGAGTCATTTCGGGTATCCAAATTACGTCCAGTGCATCAAACTAAACCTGGCCTTGAGCCAGAGGAAATCCTTCCACTCCTTCCAGACTTTAATCGTTGGGATGATCAACTTGTTCTTGCAACGTTTGATGGTGAAGCAACAGCTGATACAGAGAACTATAGCAAGTTGGAAGCATCCGTACGCGATGAAGTGGAGTCACGGGCTGTCATGAAGAGTTTTGTTCATGCTGGTTCAGATCCAACCAAACCAGAGAAGTTTTTGTCATACATGGTACCTGCAGTGGAGGAGCTGATGAAGGATATGTATGATGAAGATGATGAAGAGATGTCCTACACATGGTTAAGGGAATATCATTGGGAGTTGCGTGCAGATGATGCTAACTCTCCAGTAACTTATGTTCTTGTGTTTGGCGAGGATGGTGCCAGATACCTGCCTCTTCCGACAAAGTTGGTTCTACAGAAGAGAAGGTCAAAGGAGGGAAGGTCTAATGATGACATTGAAAGCCAGTATCCGGTACCTTCAAGGGTGTCTATAAGGAATCGATCCCTTACACAAAAGGAGGAAGAACAGCGAGACACTGGTAGAGCAAGGCTTATGGAGGGCCAAGCAAATACTGTGGGAAATATCAGTGGTTCAAAGCGCATGGCATCTGATGAAGACATTCATAGATCTAGACATAAATTAGGGCGAGTGGAAGAAACTGATCACAACCTGAGTGGAGATGAATATTTGTCTGAGTAG___TTTTACAGAAAATCAAAGGCTCATTGCTTTCCTCCAAGAATCAAACAAGAAATGTGGATCCCTGTATGTTTTGTATGGCCTGTGAGAGAATTGTACATGCAGGTGAGCCTACCTACTTAATGCAAATGCCATGCTGTTGGGGAATTTGATGCCACTTTATAGAGGTGTTTTGAAACTGTTACGTCACACTCAGCAGAAGTATCCTTAAAATTCAATAATTATGAGATTAGCTGTAGCTCTTGCAAGCTGTGTTTTGGAGCCAATATTAATTCTTTATCTTCTGCCTTCTGATATTCAAGAATCTGTAGCTATGTCAACTCTTAAGATTTACACATAACAGTTCATACTTTGGAGGGATAAATAAATGTCTCTGTATCTACGAATACATCTCTCCTGTGCTTTTTGCGGGAATATATTTTGAGAGAAAATAGAGTAATGTATCTATCAGGAGGCAAGATTTATGAAATTTCCTATCCAAACACATGCATTTCTTTTGAAACCATGGGTTCAGATTCTTTCATTTCTATTTCTCAACATAATGCTAGGCTGGAAACTTGCATGCTGAAGGCGTGAGCTATTATCTCAATGTTGAAATGGCAATATGACACTGTTGAACGAACATTATATATCTGTAAACTGGCTTGTGGAAGTCAAACCTTTTAGTTCTCGAGTGCTTTGATTCACCATTTTGGAGAAGAATTGAAATCC

Fln Alignment:

Contig2154___ANAALLRKNQLGSSLQPAKVTAGSTPRGDGR----VERKPQYVGAEKIDNKLKKPTTFLCKLKFRNELPDPTAQPKLLSISTNKDRYVKYTITSLEKTHKPKLFVEXXXXXXXXXXXXSVYNPPKVKQTMXXXXXXXXXXXXMKTPNKLDGIRKKDRPTDKGVSWLVKTQYISPISLESTKQSLTERQIKELREAREGRNIFLESLNNREQQIQAIEESFRVSKLRPVHQTKXXXXXXXXXXXXXDFNRWDDQLVLATFDGEATADTENYSKLEASVRDEVESRAVMKSFVHAGSDPTKPEKFLSYMVPAVXXXXXXXXXXXXXXXSYTWLREYHWELRADDANSPVTYVLVFGEDGARYLPLPTKLVLQKRRSKEGRSNDDIESQYPVPSRVSIRNRSLTQKEEEQRDTGRARLME-GQANTVGNISGSKRMASDEDIHRSRHKLGRVEETDHNLSGDEY
Q6ZD92______________SQATVLQKTQQVRAAQQPQSRHHQQPSGGSRPAVTATRPAAAPNAERFENRLKKPTTFLCKHKFRNELPDPSSQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPEDLGIPLDLLDMSVYNTPPVQPPMAPEDEELLRDDEVLTPVKKDGIRKKERPTDKGMSWLVKTQYISPLSTDAAKMSITEKQAKERRESREGRNTFLENINDREKQIKAIEDSFRAAKSRPVHQTKRGMEAEWVLPLLPDFDRYDDQFVMVNFDGDPTADSEQYNKLERSERDECESRAVMKSFLVNGSDPAKQEKFLAYMVPS-PHELSKDLDDETEDIQYSWLREYHWEVRGDDKDDPTTYLVTFDDDGAKYLPLPTKLVLQKKKAKEGRSGDEIE-HFPVPSRITVSR------------TAHGGMMEHGESSSMHENLKRQRSSVDDDLY-DHPKHSRVEDMD-QYSGDEY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
986		10		90	0.90298
1049		10		90	0.90298
1184	83	16			0.994512
1580	10		90		0.90298
1634	50	50			1.0
1639	87		12		0.992554
1988	7	15		76	0.999983
2207		16		83	0.999991
2213		25		75	1.0
2214			83	16	0.999991
2216	83		16		0.999991
2217			16	83	0.999991
2220	83		16		0.999991
2221		83		16	0.999991
2222		16	83		0.999991
2224	81	18			0.999994
2513		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
33	44	CCT CCT CCT CCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain