SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2152

Length: 1991 nt

UniGene Fasta

>sp_v3.0_unigene2152
CACTGCTTAAGCAGTGGTATCAACGCAGAATACGCAAGGCTCATTTACACGTGCATGACAGCACAAAACTAGGAAAAATAACCCTTTCCGGACCCTGGTCAGCATGTATGGATCTTCATCGCATCTCCTATATGTAGGCGTAGCTGATTTAAATAAAGAGAAACACAAGTCAAAATATCATTCCATTCATACCGAGCTGTGAGAATACCGGTGTCCAAGCCCGCGTAAATGGTTGTATCCCTGTCTCGCTTTTAGCTGAAGCCATGACGACTCCTGCATCCCGTAAGAGGCTTGCAAGTCACATGGACGAATCCCTTTCCCCCCACGAATCTGAAACAGATTCAGAGGAAGAAGCAGAAGTATTTATCGAATCACTTGATCAGAACGAATCAGAAGAAGAGGAGGAAGAAGAAGTATTCGATTGCGATGAATGGGCACCTCCCGCCCGCGTGTTCGATCCCCACCCCTGCCCAGATCCGTCAGATACTGAGAAGCCTGTTCGCGTTTACGCAGACGGAATATACGATCTCTTCCACTTCGGCCACGCCCGATCTCTGGAACAGGCCAAGAAATCGTTCCCGAATGTGTATTTGCTGGTGGGATGCTGTAGCGATGCGGTCACACACAGGTACAAGGGTAAGACGGTGATGACCGAAGCCGAACGCTATGAATCCCTTCGTCATTGCAGATGGGTGGACGAGGTTGTGCCAGATGCTCCTTGGGTGATCACAAAAGAGTTTTTAGACAAGCACCAAATTGACTTTGTTGCTCATGATGCCCTTCCATATGCCGATGCAAGTGGAGCAGGCAATGATGTGTATGAATATATCAAATCAATTGGCAAATTTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAATATGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAGGAGCAACAAGAGCGTGTAGGGAAAAAGTTACATATCGTTGCCACAAGAGCTGGAATACATCACAGTGAGTGGGTTGAAAATGCAGATAGATGGGTGGCTGGTTTTCTAGAGATGTTTGAGGAGGGGTGTTATATAATGGAAACGGCTATCAAGACTCGGATTCAGAAAGGTTTGATGAAGGAGCAAGTGAAAAAACGATCAGCTTCAAAAATGCTGGCAGGCTCCTTCCAGTAATGCCTGTAATTTAGTGGAGTATATCAGTGTGGTCACAAACAATTTATCCAGGCTTGAAAGTTGTTTATATATGTTTGGGATTCATGAAATTTGACTGAGTAGAAGTATATGAGTTTTTATATCCCGGCCTGCTGAATGCCATCCCTTTTTACTGTATTTGTTTGTTCCTATGCTTTTGCATGGTGTTTGACCTGATCAGTTTTTTGGCTATTTTTTGTTTAACAAACATTATATTTTCATTTAATGTACAGTGGTAGTGGACAGGCCGAAACCTGAACATTATTTTGGAACAGAACTTCAACTTTAAGGAGGACCATTTACAATGTTATTTATTTACATGCAAGGCACATTTCGTCAGTTTCTTCAGAAAGGAAATTTGGGCAGAAACAATTTCCTATCTTAGAACCAGCGGAGTTTAACAGGCTAGAATTGCCAGAAGCCTTGGGTAGCCAAACACGTTGTGGAATGAATTCTTGAAAGAACATAGTTGGAGATGCTTTAGTCAGCTGTTGTACATTGTAGATGGATGGATTTTCAATCATTGCAGTGTGCATATTATTAATGGTATTTATATGAGACATCTTATCTTGATTTCACACACCTTTTGTTGGATTTTGAGAGCCTGATAACATTACTTTTTAGCGTATTTCAAAGGAAACGCTTGAACTCGTTTGATGCGTAATGGTTGAATAGAAAGTGCATAACATTCAATGACACATT

Ace file of the UniGene sp_v3.0_unigene2152

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cholinephosphate cytidylyltransferase [Pisum sativum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G15130.1	ATCCT2, CCT2 phosphorylcholine cytidylyltransferase2 chr4:8637793-8639388 FORWARD LENGTH=304	74%
RefSeq	Arabidopsis thaliana	NP_193249.5	phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002303347.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQQ2

Fln msg:

Fln protein: MTTPASRKRLASHMDESLSPHESETDSEEEAEVFIESLDQNESEEEEEEEVFDCDEWAPPARVFDPHPCPDPSDTEKPVRVYADGIYDLFHFGHARSLEQAKKSFPNVYLLVGCCSDAVTHRYKGKTVMTEAERYESLRHCRWVDEVVPDAPWVITKEFLDKHQIDFVAHDALPYADASGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEQQERVGKKLHIVATRAGIHHSEWVENADRWVAGFLEMFEEGCYIMETAIKTRIQKGLMKEQVKKRSASKMLAGSFQ*

Protein Length: 337

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAATACGCAAGGCTCATTTACACGTGCATGACAGCACAAAACTAGGAAAAATAACCCTTTCCGGACCCTGGTCAGCATGTATGGATCTTCATCGCATCTCCTATATGTAGGCGTAGCTGATTTAAATAAAGAGAAACACAAGTCAAAATATCATTCCATTCATACCGAGCTGTGAGAATACCGGTGTCCAAGCCCGCGTAAATGGTTGTATCCCTGTCTCGCTTTTAGCTGAAGCC_-_ATGACGACTCCTGCATCCCGTAAGAGGCTTGCAAGTCACATGGACGAATCCCTTTCCCCCCACGAATCTGAAACAGATTCAGAGGAAGAAGCAGAAGTATTTATCGAATCACTTGATCAGAACGAATCAGAAGAAGAGGAGGAAGAAGAAGTATTCGATTGCGATGAATGGGCACCTCCCGCCCGCGTGTTCGATCCCCACCCCTGCCCAGATCCGTCAGATACTGAGAAGCCTGTTCGCGTTTACGCAGACGGAATATACGATCTCTTCCACTTCGGCCACGCCCGATCTCTGGAACAGGCCAAGAAATCGTTCCCGAATGTGTATTTGCTGGTGGGATGCTGTAGCGATGCGGTCACACACAGGTACAAGGGTAAGACGGTGATGACCGAAGCCGAACGCTATGAATCCCTTCGTCATTGCAGATGGGTGGACGAGGTTGTGCCAGATGCTCCTTGGGTGATCACAAAAGAGTTTTTAGACAAGCACCAAATTGACTTTGTTGCTCATGATGCCCTTCCATATGCCGATGCAAGTGGAGCAGGCAATGATGTGTATGAATATATCAAATCAATTGGCAAATTTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAATATGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAGGAGCAACAAGAGCGTGTAGGGAAAAAGTTACATATCGTTGCCACAAGAGCTGGAATACATCACAGTGAGTGGGTTGAAAATGCAGATAGATGGGTGGCTGGTTTTCTAGAGATGTTTGAGGAGGGGTGTTATATAATGGAAACGGCTATCAAGACTCGGATTCAGAAAGGTTTGATGAAGGAGCAAGTGAAAAAACGATCAGCTTCAAAAATGCTGGCAGGCTCCTTCCAGTAA___TGCCTGTAATTTAGTGGAGTATATCAGTGTGGTCACAAACAATTTATCCAGGCTTGAAAGTTGTTTATATATGTTTGGGATTCATGAAATTTGACTGAGTAGAAGTATATGAGTTTTTATATCCCGGCCTGCTGAATGCCATCCCTTTTTACTGTATTTGTTTGTTCCTATGCTTTTGCATGGTGTTTGACCTGATCAGTTTTTTGGCTATTTTTTGTTTAACAAACATTATATTTTCATTTAATGTACAGTGGTAGTGGACAGGCCGAAACCTGAACATTATTTTGGAACAGAACTTCAACTTTAAGGAGGACCATTTACAATGTTATTTATTTACATGCAAGGCACATTTCGTCAGTTTCTTCAGAAAGGAAATTTGGGCAGAAACAATTTCCTATCTTAGAACCAGCGGAGTTTAACAGGCTAGAATTGCCAGAAGCCTTGGGTAGCCAAACACGTTGTGGAATGAATTCTTGAAAGAACATAGTTGGAGATGCTTTAGTCAGCTGTTGTACATTGTAGATGGATGGATTTTCAATCATTGCAGTGTGCATATTATTAATGGTATTTATATGAGACATCTTATCTTGATTTCACACACCTTTTGTTGGATTTTGAGAGCCTGATAACATTACTTTTTAGCGTATTTCAAAGGAAACGCTTGAACTCGTTTGATGCGTAATGGTTGAATAGAAAGTGCATAACATTCAATGACACATT

Fln Alignment:

Contig2152___MTTPASRKRLASHMDESLXXXXXXXXXXXXXX-VFIESLDQNXXXXXXXXX-VFDCDEWAPPARVFDPHPCPDPSDTEKPVRVYADGIYDLFHFGHARSLEQAKKSFPNVYLLVGCCSDAVTHRYKGKTVMTEAERYESLRHCRWVDEVVPDAPWVITKEFLDKHQIDFVAHDALPYADASGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEQQERVGKKLHIVATRAGIHHSEWVENADRWVAGFLEMFEEGCYIMETAIKTRIQKGLMKEQVKKRSASKMLAGSFQ
B8LQQ2______________MATPASRKRLASQMDESLSHHETESDSEEEAEEVFIESLAHHESESEEEEEEVFDCDEWAPPARVFDPHPCPDPSNTEKPVRVYADGIYDLFHFGHARSLEQAKKSFPNVYLLVGCCSDAVTHMYKGKTVMTEAERYESLRHCRWVDEVVPDAPWVITKEFLDKHQIDYVAHDALPYADTSGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEHQERVGQKLHIVATRAGIHHSEWVENADRWVAGFLEKFEEGCYLMETAIKTRIQKGLMKEQVKKRSASKMLAGSLQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1192	97		2		0.917783
1232	97		2		0.958202
1359	96		4		0.999968
1400		90		1	1.0
1820		13		86	1.0
1866	10	5		84	0.999846
1871	27	72			1.0
1872	85		14		0.993533
1873	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain