SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2128

Length: 3819 nt

UniGene Fasta

>sp_v3.0_unigene2128
CAGTGCTTTTCATAGAGATGTTAAACCATAGTTTACTCTCTCTTTTTTTTTTCCCTCTTTCTATTGATGGTTTTGCCACAATATGTCTATGTTTGTGTTCAGTCTTTCTGAGAACATCATTTGTGCGTTTGTGCCTTGCACTATTTCCTACAAGGCTATTGAAAACATTAGAAGCAACATACTTATATTTTATTTTAGAAGTCTAGAAAGTTATACAATTGGAATGATTATCGAGGTAATGGCAGTCTTTAGCGAAACAGTAAAAGTGGGTCAAAGAAGAAAAACCTAATCTAGAAGGTTACACAATTGGAATGGTTATCAAGGTAATGGCAGTCTTTAGCGAAACCGTAAAATTGGGTCAAAGAAGAAACAAAGGCCTTGATATAGTAGGACAATCATTGGTGATCTAAGTGGTTTCAAAAGTCCTATGGTCTGGTTGTGGTCACCTGAAATCTTTAGCTAAAGACCTTGGTATAATAGGACAATCATTGGTGATCTAAGTGGTTTCAAAGTCCTATGTTCTGGTTGTGGCCACCTGAAATCTTTATCTAAGTTCTGGAGTATTAAATAATATAACAAAGAGGAATGGAAATTTATATGTTTGCGTCATCGATTACTCAAAAGATTAATTTAGGAAAGTGCCATAGTTCTCAAAGCTATGAATTGAGAGTCTACATGCTTTCAGAATGCATGTTTTTTTGAGTGCCTGTTTTGGATTCAATGCCATGCCAAGGATGTTTTGTTTGCACAGTTTCAGGTAAAAACTTTACCCGTCATTAGCGGAAACAGGCAAGTGAAAATTACAGAATAATGTGCTTGCAAAAGGGTAGAGCGCTCTCTATACAGAGAGGATTGAAGTGTGGAAGGTGATAAGATAATTTAATCAACAAAATTAGAACCTTAAAATTAAATTTAAATTAAATTAATTATGAATGAACGTAAAACAATGTAAAATGATATGTTGATGACTTTAAAGAGAGACCAAATTAATTAGTAGAAAATATCAAAATAATTGAAGTTAAATTAAATTGAAGTAGTGTGTTAATGACAAATAACAAGTTTGAGAGAGAAAAAACGCCAATTAATATGAATTGAAAAAAGCAAAGAACTTATAGTAATGAAAGAACAAAAGGAGGAAAATCACCAAAGAAAATATTCTATGAGCTATTTTGCCAAGGTGAAGGGAAAATGCTATCATATGTTTCATTTTACAAAGGTGTTTGGAGGATTACCTCAATGACCATTAATAATTACCACATTTTGAAGGTCTGTATAATGAAACAACAATTTATTTCGTAAATTACAAGAATAAAGATGAAAAACAGCTTATTCTTGAACGAGGTCTATCCAAGGATCTTAAGATGCAGGTTTTCATGTGCACCAAGCATTCAACAATTAGCTGGACTGACACTTCTGCCAGGCCACAATACTGCAAGCAGCAATAGTTTTCTCAAGTGTTTGGGTTGGGATGCTGCAATCTGGAGCACCTCATTCTTCATCATGAATTCATGGTTTATACTTGTTTCGTTTTGTTCTTGTTTTTCTTAGTTCTTCATGTGCTTGATTTGTTGCTTCTCTTTTTCTTTTCACCAGAAAATGGAGGTTTTGCCCCTGTTCTCTTCTGGACTGGTTGCATATACTTGAGAAAACTTTTGGTTTGACACTGCATCAAATGATCGTGCAGCAAAGTTCATGTTCCTGGACTGAAACAAATAAGTCGCAAACAGCACCCCTTCAACTCTTTCAAAGTTGTGACACTGAAGAATTCTTCAGGAGCTGATTGAGATTGCAGTTGGGCTTAAATAGATGTGCATTTTCTATTCATTTCATCCATGGCAATTTTGCCACATGGAGCTGACCAAGATTATACTTGGATTTTGTGCTTTCTGACCCAGGCTGCTATGCAGTTTTGTGACCAGATTGGAGCTGTTCGAAGAGATGTGACCGGTGTTCTTGAATGGGTGTTGACTAAAATGATTGTATTTATATGTAGCTGTAACACTGACTTGCCCTTCAAACTTTTCTATGCAGGTACTTAACAGTAAATTATGGGTACAACGATGGAGTATTTTCATGATCCTATGACCACCCATGGATCTAATGGGCTGGAGGAACATACCTCAACTTCCACAAAAAGTGGCGTGGAAGGAAACGCTGAACGCTTGGAAAAGCTAGACAAAGGATATTTACAGTATGGTTGCTCACATTATAAACGGAGATGCCGTATTAGAGCGCCATGTTGCAATGAGGTCTTTGATTGTAGACATTGTCACAATGAAGCAAAGAATTCTGTCAATGTTAAGCCCCAACAGAGACATGATGTTCCTCGACACAATCTCCAAAGGGTCATTTGTTCACTTTGTGACACTGAGCAAGATGTTCATCAAGTGTGTATTAACTGTGGCGTCTGCATGGGGAAGTACTTTTGTGAAACATGCAAGCTATTTGATGATGATATCTCAAAACAGCAATACCACTGTGATGGATGTGGTATATGTAGAACTGGGGGCAGGGATAATTTCTTCCACTGCTTTAAATGTGGTTGTTGCTATTCGATTATGTTGAAGGATTGTCATCCTTGTGTAGAAGGAGCAATGCACCACAACTGTCCCGTTTGTTTTGAGTTCCTGTTCGAGTCGACGAGGGATATTAATGTACTACCTTGTGGGCACACTATTCATATGGACTGTTTGAAAGAGATGCAACAGCACCTACAGTTCTTTTGTCCAGTGTGTTCGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAACTTGACGAAGAGGTTGCTTTGACACCAATGCCCGAGTCCTACCAGAACAAGAAGATCTGGATTTTATGCAATGATTGTAATGCAACTTCAGAAGTACCGTTTCACATTGTCGCACAAAAGTGCCTGAACTGCAATTCGTATAACACCCGACAGACCAGAGGATGTCACACCACAGACACTTGTCGACAATAACTGTTGCCGTTGTGATGTCTAACTGAAGGTTCTGATGAGCAATCGTAAAAGCTGCTGCGGCCATGAAGACGATCTTGCAATGAAGATTCATTATACCTCACAAGCATCAAATATCCTCTGGATTGTATGAAAGTGGCTGTACTATCATGTTATAATTTTACTGCAGTGAATAAATACCTGTCCTGCCTGAGTGGCTCTGAAAGTTATGCATTGCAGTTTGTTGCCATTTGCTCGACCTGCTAGGATAGCTTTCAATGGATTTGGCAGGGGCAGGTCAGAAAGCACACAAGCAAAGGCCGGATAGAGCAGCGGCTAGCTTGGTGCATGTCAAAATTGAAGAAAAAATCATTTTAGCGCCTTTTGGAATAGACTGGGGTGTACGGGGACCAGTAGTTATGCCATTTCTATTATCTCGAGTTTCTTGTCTAAACTTCAGAGAATTTGCCAAAAAAATTCTGGATTTTTGAAACAATATAGAAATGGCTTTCCAGTTCTTGGAAAATTTAAAACTCGTCAATGAAGCTGATATATTTTGTGATAACCAGTCTTCCTTTAATTTAGTTAATTTGTGCCTCAGCTCTGATCCTAGTTTTTATTCCTCTCGCTGTACATGTAATTGTAATCTTGGGATTCTGGAAGTGTTGTTTCATGGTATTTCAAATAAAAACACGAACAGACTGAATAATTGAAAACGAAGAAAGTCTTTTTAGCTTGTAAATGATGTGATATTCACAGTAAGTGTAGAAATGATTCAGGCATATAATGTCTTTATTAAAGATAAAATCCTGAAAAGGCGACTGAAGGGACACTGGGAAGGTGCAGGTTAGCTTAATGTTTTGCATTCTCTAATACA

Ace file of the UniGene sp_v3.0_unigene2128

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana] gb\|AED93462.1\| CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	VITISV_029477;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein chr5:7665143-7667031 FORWARD LENGTH=291	64%
RefSeq	Arabidopsis thaliana	NP_197938.2	CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002309580.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: your sequence is longer than subject: 306 - 273

Fln protein: MGTTMEYFHDPMTTHGSNGLEEHTSTSTKSGVEGNAERLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPRHNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNFFHCFKCGCCYSIMLKDCHPCVEGAMHHNCPVCFEFLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQTRGCHTTDTCRQ*

Protein Length: 307

Fln nts: CAGTGCTTTTCATAGAGATGTTAAACCATAGTTTACTCTCTCTTTTTTTTTTCCCTCTTTCTATTGATGGTTTTGCCACAATATGTCTATGTTTGTGTTCAGTCTTTCTGAGAACATCATTTGTGCGTTTGTGCCTTGCACTATTTCCTACAAGGCTATTGAAAACATTAGAAGCAACATACTTATATTTTATTTTAGAAGTCTAGAAAGTTATACAATTGGAATGATTATCGAGGTAATGGCAGTCTTTAGCGAAACAGTAAAAGTGGGTCAAAGAAGAAAAACCTAATCTAGAAGGTTACACAATTGGAATGGTTATCAAGGTAATGGCAGTCTTTAGCGAAACCGTAAAATTGGGTCAAAGAAGAAACAAAGGCCTTGATATAGTAGGACAATCATTGGTGATCTAAGTGGTTTCAAAAGTCCTATGGTCTGGTTGTGGTCACCTGAAATCTTTAGCTAAAGACCTTGGTATAATAGGACAATCATTGGTGATCTAAGTGGTTTCAAAGTCCTATGTTCTGGTTGTGGCCACCTGAAATCTTTATCTAAGTTCTGGAGTATTAAATAATATAACAAAGAGGAATGGAAATTTATATGTTTGCGTCATCGATTACTCAAAAGATTAATTTAGGAAAGTGCCATAGTTCTCAAAGCTATGAATTGAGAGTCTACATGCTTTCAGAATGCATGTTTTTTTGAGTGCCTGTTTTGGATTCAATGCCATGCCAAGGATGTTTTGTTTGCACAGTTTCAGGTAAAAACTTTACCCGTCATTAGCGGAAACAGGCAAGTGAAAATTACAGAATAATGTGCTTGCAAAAGGGTAGAGCGCTCTCTATACAGAGAGGATTGAAGTGTGGAAGGTGATAAGATAATTTAATCAACAAAATTAGAACCTTAAAATTAAATTTAAATTAAATTAATTATGAATGAACGTAAAACAATGTAAAATGATATGTTGATGACTTTAAAGAGAGACCAAATTAATTAGTAGAAAATATCAAAATAATTGAAGTTAAATTAAATTGAAGTAGTGTGTTAATGACAAATAACAAGTTTGAGAGAGAAAAAACGCCAATTAATATGAATTGAAAAAAGCAAAGAACTTATAGTAATGAAAGAACAAAAGGAGGAAAATCACCAAAGAAAATATTCTATGAGCTATTTTGCCAAGGTGAAGGGAAAATGCTATCATATGTTTCATTTTACAAAGGTGTTTGGAGGATTACCTCAATGACCATTAATAATTACCACATTTTGAAGGTCTGTATAATGAAACAACAATTTATTTCGTAAATTACAAGAATAAAGATGAAAAACAGCTTATTCTTGAACGAGGTCTATCCAAGGATCTTAAGATGCAGGTTTTCATGTGCACCAAGCATTCAACAATTAGCTGGACTGACACTTCTGCCAGGCCACAATACTGCAAGCAGCAATAGTTTTCTCAAGTGTTTGGGTTGGGATGCTGCAATCTGGAGCACCTCATTCTTCATCATGAATTCATGGTTTATACTTGTTTCGTTTTGTTCTTGTTTTTCTTAGTTCTTCATGTGCTTGATTTGTTGCTTCTCTTTTTCTTTTCACCAGAAAATGGAGGTTTTGCCCCTGTTCTCTTCTGGACTGGTTGCATATACTTGAGAAAACTTTTGGTTTGACACTGCATCAAATGATCGTGCAGCAAAGTTCATGTTCCTGGACTGAAACAAATAAGTCGCAAACAGCACCCCTTCAACTCTTTCAAAGTTGTGACACTGAAGAATTCTTCAGGAGCTGATTGAGATTGCAGTTGGGCTTAAATAGATGTGCATTTTCTATTCATTTCATCCATGGCAATTTTGCCACATGGAGCTGACCAAGATTATACTTGGATTTTGTGCTTTCTGACCCAGGCTGCTATGCAGTTTTGTGACCAGATTGGAGCTGTTCGAAGAGATGTGACCGGTGTTCTTGAATGGGTGTTGACTAAAATGATTGTATTTATATGTAGCTGTAACACTGACTTGCCCTTCAAACTTTTCTATGCAGGTACTTAACAGTAAATT_-_ATGGGTACAACGATGGAGTATTTTCATGATCCTATGACCACCCATGGATCTAATGGGCTGGAGGAACATACCTCAACTTCCACAAAAAGTGGCGTGGAAGGAAACGCTGAACGCTTGGAAAAGCTAGACAAAGGATATTTACAGTATGGTTGCTCACATTATAAACGGAGATGCCGTATTAGAGCGCCATGTTGCAATGAGGTCTTTGATTGTAGACATTGTCACAATGAAGCAAAGAATTCTGTCAATGTTAAGCCCCAACAGAGACATGATGTTCCTCGACACAATCTCCAAAGGGTCATTTGTTCACTTTGTGACACTGAGCAAGATGTTCATCAAGTGTGTATTAACTGTGGCGTCTGCATGGGGAAGTACTTTTGTGAAACATGCAAGCTATTTGATGATGATATCTCAAAACAGCAATACCACTGTGATGGATGTGGTATATGTAGAACTGGGGGCAGGGATAATTTCTTCCACTGCTTTAAATGTGGTTGTTGCTATTCGATTATGTTGAAGGATTGTCATCCTTGTGTAGAAGGAGCAATGCACCACAACTGTCCCGTTTGTTTTGAGTTCCTGTTCGAGTCGACGAGGGATATTAATGTACTACCTTGTGGGCACACTATTCATATGGACTGTTTGAAAGAGATGCAACAGCACCTACAGTTCTTTTGTCCAGTGTGTTCGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAACTTGACGAAGAGGTTGCTTTGACACCAATGCCCGAGTCCTACCAGAACAAGAAGATCTGGATTTTATGCAATGATTGTAATGCAACTTCAGAAGTACCGTTTCACATTGTCGCACAAAAGTGCCTGAACTGCAATTCGTATAACACCCGACAGACCAGAGGATGTCACACCACAGACACTTGTCGACAATAA___CTGTTGCCGTTGTGATGTCTAACTGAAGGTTCTGATGAGCAATCGTAAAAGCTGCTGCGGCCATGAAGACGATCTTGCAATGAAGATTCATTATACCTCACAAGCATCAAATATCCTCTGGATTGTATGAAAGTGGCTGTACTATCATGTTATAATTTTACTGCAGTGAATAAATACCTGTCCTGCCTGAGTGGCTCTGAAAGTTATGCATTGCAGTTTGTTGCCATTTGCTCGACCTGCTAGGATAGCTTTCAATGGATTTGGCAGGGGCAGGTCAGAAAGCACACAAGCAAAGGCCGGATAGAGCAGCGGCTAGCTTGGTGCATGTCAAAATTGAAGAAAAAATCATTTTAGCGCCTTTTGGAATAGACTGGGGTGTACGGGGACCAGTAGTTATGCCATTTCTATTATCTCGAGTTTCTTGTCTAAACTTCAGAGAATTTGCCAAAAAAATTCTGGATTTTTGAAACAATATAGAAATGGCTTTCCAGTTCTTGGAAAATTTAAAACTCGTCAATGAAGCTGATATATTTTGTGATAACCAGTCTTCCTTTAATTTAGTTAATTTGTGCCTCAGCTCTGATCCTAGTTTTTATTCCTCTCGCTGTACATGTAATTGTAATCTTGGGATTCTGGAAGTGTTGTTTCATGGTATTTCAAATAAAAACACGAACAGACTGAATAATTGAAAACGAAGAAAGTCTTTTTAGCTTGTAAATGATGTGATATTCACAGTAAGTGTAGAAATGATTCAGGCATATAATGTCTTTATTAAAGATAAAATCCTGAAAAGGCGACTGAAGGGACACTGGGAAGGTGCAGGTTAGCTTAATGTTTTGCATTCTCTAATACA

Fln Alignment:

Contig2128___LEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPRHNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNFFHCFKCGCCYSIMLKDCHPCVEGAMHHNCPVCFEFLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQTRG
D5A9X0______________LDRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK-DPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
266	33	66			1.0
529			88	11	0.999952
732	90		10		0.90298
742	11			88	0.923564
839	14			85	0.993533
1515			80	20	0.995493
3487	45	54			1.0
3543		70		30	1.0
3609			90	9	0.999872
3647	75		25		1.0
3662	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain