SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2121

Length: 1924 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2121

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_973461.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAL11603.1\|AF424609_1 unknown protein [Arabidopsis thaliana] gb\|AAM15000.1\| Expressed protein [Arabidopsis thaliana	-	-	4.0e-36	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	RCOM_0175100;

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7W9

Fln msg: your sequence is longer than subject: 359 - 142

Fln protein: MVLCKCQKATELYCCMHKAPVCGDCICLPEHSTCEVRTYAEWIADTSCTFLPKCSLCLQILRGTSDSVTRLGCLHVLHTSCLLILLKGCASPTGYKCPSCKSEMWPTKRQFVSSGSILAKHLEELFAKSYIAMLDKNALLPLASELLPNLSDLSGQGIARSLSADRTTVFSLSSPLAEIYKDQTIEKMPLNCILNDLNPLKNDVLTFKPSTMTDIEAAKSSFPAIATAEPVGSPKRAMVFSRKCSFRGDKKIIDGPAEDCGKGSKHTPNGLETEYVGSLIPCSTPARLVLPITSPTYKTTSKSHGMQDAADGLWQRYKRAALIDPRKILLLFATLSSMGTMVLIYFTLQSEKFVFLFT*

Protein Length: 360

Fln nts: GATGCATGCACACCGATGTCTCTTTTTTTCACAAACAACAAGCCATATATGACATGGAGGGGAAAAATAACCACCCATATGCACAGAACCATCATATGCAACCCTCCTGTTCTCTGCCATTTTCTGGTACAATAAAGAGAGGGTGTAGTTACCAAGGTAAAAGGAAGAAGGTTGAATCCACACAGTGTCAGCAATTGGAAGGCATATAGGAGGTATAGTACACTACAGTGTTCAGAAATTGTGAATGTCTATGTAATGGAAATGATGAACATGACATTATGTAAATAGAAGGTGCACGAGTATTAGATACATTTACCGTATGGACCCTGGGGAGTTTGAAGGAACAGGGGAAAATTGTTACTGGCATGGTTAGTTACTAGTGTATATTTTCAACTTCCTCTTTTGTGGGTGTTGAGGCTGGATTTGTATTGATTACTCTGCACGCTACAATGACATGTGCATTATTGCGGTTCAGTACCCATCTAAGCTGCACGTGACTGACCCATATCGGAGCGCAGTGTAGAGGCGAGTGAAGGAATCTGTTATTTGCTGAAGGCGAAGATCAAAGTTGAAGTCCCGAAGAATTAGCC_-_ATGGTACTCTGCAAATGTCAGAAGGCAACAGAACTATATTGTTGTATGCACAAGGCTCCGGTCTGCGGAGATTGTATTTGCCTTCCTGAACACAGCACTTGTGAGGTAAGGACTTATGCGGAGTGGATAGCTGATACAAGTTGCACATTTCTGCCAAAATGTAGTTTATGCTTGCAAATATTACGTGGCACAAGTGATTCTGTCACTCGGCTTGGCTGCTTACATGTTTTGCATACCTCATGCCTGCTTATACTTCTAAAAGGATGTGCCTCCCCAACTGGCTACAAATGTCCTTCATGCAAGTCAGAGATGTGGCCTACAAAGCGGCAGTTTGTTAGTTCTGGTTCTATCCTTGCCAAACACTTGGAGGAGCTCTTTGCAAAGAGCTACATTGCGATGTTGGACAAGAATGCTCTATTACCATTAGCTTCTGAACTATTGCCAAATCTATCCGACTTATCAGGCCAAGGAATAGCTAGGTCACTCTCAGCAGATCGAACAACAGTTTTTAGCTTATCATCACCTCTTGCAGAAATATACAAGGATCAGACTATTGAGAAGATGCCATTGAACTGCATTCTTAATGATCTCAATCCACTAAAGAATGATGTACTAACTTTCAAACCAAGTACAATGACAGATATTGAAGCTGCAAAATCTAGTTTCCCTGCCATTGCGACTGCAGAGCCTGTTGGAAGCCCAAAGCGTGCTATGGTGTTTTCTAGGAAGTGTTCTTTTCGTGGTGATAAGAAAATTATTGATGGGCCTGCAGAGGACTGTGGAAAAGGCTCCAAGCATACACCAAATGGATTAGAGACAGAATATGTTGGATCTTTGATTCCATGTAGCACACCTGCTAGACTTGTGCTTCCAATAACATCACCGACATATAAGACTACAAGCAAATCTCATGGCATGCAAGATGCAGCTGATGGGCTATGGCAAAGATACAAGCGTGCTGCATTAATTGATCCGAGGAAAATTCTTTTATTGTTTGCAACACTGTCCAGCATGGGGACAATGGTACTGATATATTTTACTCTGCAATCGGAAAAATTTGTTTTCTTATTCACATAG___ATTTTTAGGAAAGCCCGGTGTAATGTACAGATTTTTATTATGCTGTTTTCATGGGTCCTCCATTCTTTGATTCAAGTTTTTGACTATACTCTTTGCCTAGAGCACAATATTGTGATCTTTGTAAATGCTTAAAATAGGGAAGTCAACTGTAGACTGATTTCATATTTTCATTGTCAAGTATTTTCTTCTCATTTATCTCTCGAATTAGTTTAAGACGTATCTAAACTTATTAATTTGTACATTCTTTTAACTTTTCA

Fln Alignment:

Contig2121___MHKAPVCGDCICLPEHSTCEVRTYAEWIADTSCTFLPKCSLCLQILRGTSDSVTRLGCLHVLHTSCLLILLKGCASPTGYKCPSCKSEMWPTKRQFVSSGSILAKHLEELFAKSYIAMLDK
D5A7W9______________MHKAPVCGDCICLPEHSTCEVRTYAEWIADTSDTFLPKCSSCLQILHGTSDSVTRLGCLHVLHTSCLLILLKGCASPTGYKCPSCNSEMWPTKRQFVSSGSILSKHLEDLFAKSYVAMLDK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
251	33			66	1.0
303	75		25		0.996473
319	50		50		1.0
321	75			25	0.996473
461	12	87			0.992554
568	83		16		0.999991
579		75		25	1.0
625	36	63			1.0
789	10			90	0.90298
791	10	90			0.90298
793			90	10	0.90298
794	10			90	0.90298
795	10	90			0.90298
1056		88		11	0.923564
1074	88		11		0.923564
1164		88		11	0.923564
1202	12			87	0.992554
1203	87			12	0.992554
1219	88	11			0.923564
1221	11			88	0.923564
1380	21	78			1.0
1493	16		83		0.999991
1807	12		87		0.992554
1809	87		12		0.992554
1820		12	87		0.992554
1857		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain