SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2117

Length: 3722 nt

UniGene Fasta

>sp_v3.0_unigene2117
TGGACTTGAGAATCTCCGTGTGTTATAAATGCCGTGTAGATCCACAGAAGGATATTAGCGGCGGTGGGTTATGGCGACGGGATTTATCCAGGGTTTCGTGTTTGTGGCGACATGATTAGGCCAATTTGTTGCTGTTAGCGGTGGTTTTGGAGGCGATAGAGGTGTGTTGATAGCTAAGCCTGAATCTGCTCACAAAAATCCGGGGCCCTGAAGATTTATCGAATACGAATGCAGTTTGTGTGACTCGGTTTTGAACTGGGGAAGATGAAGGGGGATTGGCTGTGGTGGTGCCTGTGGGTTTGTTTTTGCCTTTCTTGCCCGGTCGATGCCGCCACAGATCCGACCGATGCTCAGGTGATGGCTGAAATGGCGAAGACAGTGAAGGTCGATAGCACCTGGACGGGCAACGATCCGTGCAGCGGGTGGACGGGGGGTTCCTGCTCGGAAACCAAAGTGACGGGGATCAACATTCAGAATATGAATTTGGAAGGGACACTGCCTGCGAATTTCAACAACCTGAGCGCCCTGAATTCGATTAGCATGCAGAGGAATTTGTTGTCAGGGCCGTTGCCCAGTTTCAGCGGATTGTCGAATCTGCAATCGGTGTTTCTTGACGGCAATGCGTTTGATTCCATACCGGCAGATTTCTTCCACGGGCTCACGAGTCTGCAAACATTTGCGATCGACGATAATAGCCTGTTGGCGCCGTGGTCGATCCCTGAAGACCTTGTGAGCGCCGTGGCTCTCACGTCGTTCAGTGCCAACAATGCCAGTATTGTCGGCGAGCTACCGGAGTTTTTGGGCGATGGGACAATAGCAGGGTTACAGACGCTAAAGCTGGCTTACAATAGTCTGAATGGGTCGATCCCGACATCATTCAATGCCTCGTCGAATTTACAGGTACTGTGGCTGAATAACCAGAAGGGCAGAGAACTTGGCGGATCTATTACGACCGTTGGCACCATGAGTCAGCTCACGCAGGCCTGGTTACATGTGAATGCCTTCACTGGACCAGTACCCGACTTCAAGTCGGCGAGTCTGTTCGACTTGCAGCTCCGAGACAACATGCTTACTGGACCAGTGCCTGAGTCGCTGCTTTCCTTCACCTCATTGAACATCAGCCTGAGAAACAACGAGCTACAAGGGCCTTACCCAAATTTCAAAACCAAAACCCAGCCCGACACAACTGGAAACAATTTCTGCACGTCCGTTCCTGGGACCCTCTGCGATTCCAGAGTAAATGCCCTGTTGGCCTTCGCGGAGGCCCTCGGGTACCCGTATGCAATCGCCAAAGCCTGGACGGGCAACGATCCGTGTGCCCAGTGGCTCTATGTGACTTGCGTTGGGGGCAATGTAAGCACGCTCAATATCGCAGACCAGCATTTCGTCGGCACCATATCTCCGGTGTTGTCGAGCCTTACCTCGCTCACGCAGATCATACTCAGCGGAAACAACCTCACGGGTTCGATTCCCTCCGACCTTACCCAGCTGCCTAATTTAAAGAAGCTGGATGTAACAAACAATCAGCTGTCGGGTGCAATTCCCAAGTTTGCCTCCAGCGTGTCTGTTCTCACAGGTGGCAATCCACAGATCGGGAAATCCCCTTCGCCCGGGTCATCTTCACCCGGGGCCTCACCGGGCTCTTCAGGTAACAGCAACGGGACGTCGAGCGGCAGCCATGCCGGTGGTGGCGGCTCAGGGAGCAAAGCCTGGATAGCTGGGGCTGTTATCGGCGTCGTGGCTCTGGTACTCGTTGCGGGGTTGTGCTACTGCTATGCGTCGAGGAAGCGTCAAAAGTCTACCCGCGTGCAGAGCCCCACAACTGTGGCGATTAATCCGCACCGCCGCGGCCCATCGGCTTCGTCCGACCAGGAGCTGCTGAAAATGTCGATCGGACCTTCGGTATCCGACTTTGTGCCTAGCATCAACCACAGTGGCCCGAGCGACGGTCATGTTGTCGAGCCACCGGGCAGCATGGTGATATCGATCCAGGTACTCCGCGAGGTGACCGACAATTTCAGCGAGGGAAACATATTGGGGCGAGGTGGGTTCGGTGTGGTATACAAGGGGGAGCTGCACGACGGAACCAAGATTGCTGTGAAGCGGATGGAGGCAGCGAAGGTGAGTAGCAAGGGGCTGAGCGAGTTCCAGGCAGAGATCGCCGTCCTTACCAAGGTTAGACATCGGCACCTCGTGGGTCTCCTCGGGTACTGTATCGACGGCGGGGAGAAGATGCTGGTGTACGAGTATATGCCCCAGGGGCCGCTGAGTCTGCATCTGTTTGAATGGGCGGCGGCCGGGCTGAGGCCGCTAGAATGGAAACAGAGGCTTAGCATTGCCCTCGATGTCGCCCGCGGAGTTGAGTACCTGCACAGCCTTGCACAGACGAGCTTCATTCACAGAGATCTGAAGCCCTCTAATATCCTTCTGGGCGACGACATGAGGGCCAAGGTCTCGGATTTCGGGTTGGTCAAGCTGGCCCCTGATGGAAAGTTTTCTGTTGAAACCAGGCTGGCCGGCACTTTTGGTTATCTGGCCCCTGAATACGCAGTGACGGGTCGGGTGACAACCAAGGTGGACGTGTTCAGCTTTGGTGTGGTGCTGATGGAGCTGATAACTGGACGCAAGGCTCTGGATGAGACCCAACCAGAGGAGAGCATGCACTTGGTCACATGGTTCCGGCGTACGTTCATGAGCCGCGAGGGTTTCCGCAAGGCTATTGACCCAGTCCTTGACGTGACTGACGATACCTTCCAAAATATCTGCAAAGTGGCGGAGCTGGCTGGTCACTGCACCTCTCGGGAGCCCTTCCAGCGCCCTGACATGGGCCACGCAGTCAATGTGCTCTCCCCCCTCGTCGAGCAGTGGAAGCCTGCCAAAACGGATTCCGAGGACTGCTACGGTATTGACCTTGATGTGCCCCTCTCCCAGGCGCTCAAGCGATGGCAGGCCGTTGAAGGAGGGGTATCGTCCCATGGAGACGAGGACTACTCACTCAGGAGCTTGGACAATACTCAGACAAGCATTCCCAACAAGCCCTTGGGATTTGCAGACTCCTTTCAATCAGCTGATTGCCGATGATCAATCACCCACAACAATCAGAAATACAGAATTGGGGGAACAGAATTGCAGAGCTTTCAACATTCAGTCATCCATGGTTTCCATTGATTGTATCAGAGGAGGTTTCAGCTTTTTGGTTTTTAAATTACAGCTCTCGGATTGCAAATAATCTTGATATCTGTGCCCCCATGCTCACTTTTTACATGGATTTGAAATGCTTCAGAAGAGAAAACATTGCAGGCCTTCTGGTTTGGATTGGATCAGCCATTGTTGATTGCATAGATTACTGGTGGTCCTTGTTCTTCTATCCTTACTGAGTGCATGGATTTTTAATGGTCCAGAGAGTAGATTTGTAATGGATACTGCTTTGTAATCCTTTGAATCACTGTACAGAGATTCTTTTAGTTTCTTTCCTTCAGACTATCTGCAGTAGCATCAACAAATTTGTTTTGCAAGCTACCATTTTAGTACAGTGAAAATATGATAGGAGGATAGAAGGTATTAATTATGTTAAAATATAAGGTTTTCTGTGCATCTTCTCATGGATTTATGAAAGGGATTTTGCTTACACAATTGTATTGTGATCTCCAATTTTTGTGTTGTAATGGAGCCACGCTCACTTTCAGCGGTTAGCACATACTTCTAAATATAAATCATATTAG

Ace file of the UniGene sp_v3.0_unigene2117

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T5F6_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Receptor-like kinase RHG4	-	-	1.09e-07	-

Source	Gene names
Sma3	AT1G24650; AT1G66150; AT2G01820; AT3G23750; At1g24650; At1g66150; At2g01820; At3g23750; CT268; GSVIVT00012384001; GSVIVT00017505001; GSVIVT00017506001; GSVIVT00021510001; GSVIVT00026663001; GSVIVT00030629001; GSVIVT00033505001; H0723C07.6; LOC_Os03g50810;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01820.1	Leucine-rich repeat protein kinase family protein chr2:357664-360681 REVERSE LENGTH=943	51%
RefSeq	Arabidopsis thaliana	NP_178291.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002312477.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is longer than subject: 939 - 431

Fln protein: MKGDWLWWCLWVCFCLSCPVDAATDPTDAQVMAEMAKTVKVDSTWTGNDPCSGWTGGSCSETKVTGINIQNMNLEGTLPANFNNLSALNSISMQRNLLSGPLPSFSGLSNLQSVFLDGNAFDSIPADFFHGLTSLQTFAIDDNSLLAPWSIPEDLVSAVALTSFSANNASIVGELPEFLGDGTIAGLQTLKLAYNSLNGSIPTSFNASSNLQVLWLNNQKGRELGGSITTVGTMSQLTQAWLHVNAFTGPVPDFKSASLFDLQLRDNMLTGPVPESLLSFTSLNISLRNNELQGPYPNFKTKTQPDTTGNNFCTSVPGTLCDSRVNALLAFAEALGYPYAIAKAWTGNDPCAQWLYVTCVGGNVSTLNIADQHFVGTISPVLSSLTSLTQIILSGNNLTGSIPSDLTQLPNLKKLDVTNNQLSGAIPKFASSVSVLTGGNPQIGKSPSPGSSSPGASPGSSGNSNGTSSGSHAGGGGSGSKAWIAGAVIGVVALVLVAGLCYCYASRKRQKSTRVQSPTTVAINPHRRGPSASSDQELLKMSIGPSVSDFVPSINHSGPSDGHVVEPPGSMVISIQVLREVTDNFSEGNILGRGGFGVVYKGELHDGTKIAVKRMEAAKVSSKGLSEFQAEIAVLTKVRHRHLVGLLGYCIDGGEKMLVYEYMPQGPLSLHLFEWAAAGLRPLEWKQRLSIALDVARGVEYLHSLAQTSFIHRDLKPSNILLGDDMRAKVSDFGLVKLAPDGKFSVETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVVLMELITGRKALDETQPEESMHLVTWFRRTFMSREGFRKAIDPVLDVTDDTFQNICKVAELAGHCTSREPFQRPDMGHAVNVLSPLVEQWKPAKTDSEDCYGIDLDVPLSQALKRWQAVEGGVSSHGDEDYSLRSLDNTQTSIPNKPLGFADSFQSADCR*

Protein Length: 940

Fln nts: TGGACTTGAGAATCTCCGTGTGTTATAAATGCCGTGTAGATCCACAGAAGGATATTAGCGGCGGTGGGTTATGGCGACGGGATTTATCCAGGGTTTCGTGTTTGTGGCGACATGATTAGGCCAATTTGTTGCTGTTAGCGGTGGTTTTGGAGGCGATAGAGGTGTGTTGATAGCTAAGCCTGAATCTGCTCACAAAAATCCGGGGCCCTGAAGATTTATCGAATACGAATGCAGTTTGTGTGACTCGGTTTTGAACTGGGGAAG_-_ATGAAGGGGGATTGGCTGTGGTGGTGCCTGTGGGTTTGTTTTTGCCTTTCTTGCCCGGTCGATGCCGCCACAGATCCGACCGATGCTCAGGTGATGGCTGAAATGGCGAAGACAGTGAAGGTCGATAGCACCTGGACGGGCAACGATCCGTGCAGCGGGTGGACGGGGGGTTCCTGCTCGGAAACCAAAGTGACGGGGATCAACATTCAGAATATGAATTTGGAAGGGACACTGCCTGCGAATTTCAACAACCTGAGCGCCCTGAATTCGATTAGCATGCAGAGGAATTTGTTGTCAGGGCCGTTGCCCAGTTTCAGCGGATTGTCGAATCTGCAATCGGTGTTTCTTGACGGCAATGCGTTTGATTCCATACCGGCAGATTTCTTCCACGGGCTCACGAGTCTGCAAACATTTGCGATCGACGATAATAGCCTGTTGGCGCCGTGGTCGATCCCTGAAGACCTTGTGAGCGCCGTGGCTCTCACGTCGTTCAGTGCCAACAATGCCAGTATTGTCGGCGAGCTACCGGAGTTTTTGGGCGATGGGACAATAGCAGGGTTACAGACGCTAAAGCTGGCTTACAATAGTCTGAATGGGTCGATCCCGACATCATTCAATGCCTCGTCGAATTTACAGGTACTGTGGCTGAATAACCAGAAGGGCAGAGAACTTGGCGGATCTATTACGACCGTTGGCACCATGAGTCAGCTCACGCAGGCCTGGTTACATGTGAATGCCTTCACTGGACCAGTACCCGACTTCAAGTCGGCGAGTCTGTTCGACTTGCAGCTCCGAGACAACATGCTTACTGGACCAGTGCCTGAGTCGCTGCTTTCCTTCACCTCATTGAACATCAGCCTGAGAAACAACGAGCTACAAGGGCCTTACCCAAATTTCAAAACCAAAACCCAGCCCGACACAACTGGAAACAATTTCTGCACGTCCGTTCCTGGGACCCTCTGCGATTCCAGAGTAAATGCCCTGTTGGCCTTCGCGGAGGCCCTCGGGTACCCGTATGCAATCGCCAAAGCCTGGACGGGCAACGATCCGTGTGCCCAGTGGCTCTATGTGACTTGCGTTGGGGGCAATGTAAGCACGCTCAATATCGCAGACCAGCATTTCGTCGGCACCATATCTCCGGTGTTGTCGAGCCTTACCTCGCTCACGCAGATCATACTCAGCGGAAACAACCTCACGGGTTCGATTCCCTCCGACCTTACCCAGCTGCCTAATTTAAAGAAGCTGGATGTAACAAACAATCAGCTGTCGGGTGCAATTCCCAAGTTTGCCTCCAGCGTGTCTGTTCTCACAGGTGGCAATCCACAGATCGGGAAATCCCCTTCGCCCGGGTCATCTTCACCCGGGGCCTCACCGGGCTCTTCAGGTAACAGCAACGGGACGTCGAGCGGCAGCCATGCCGGTGGTGGCGGCTCAGGGAGCAAAGCCTGGATAGCTGGGGCTGTTATCGGCGTCGTGGCTCTGGTACTCGTTGCGGGGTTGTGCTACTGCTATGCGTCGAGGAAGCGTCAAAAGTCTACCCGCGTGCAGAGCCCCACAACTGTGGCGATTAATCCGCACCGCCGCGGCCCATCGGCTTCGTCCGACCAGGAGCTGCTGAAAATGTCGATCGGACCTTCGGTATCCGACTTTGTGCCTAGCATCAACCACAGTGGCCCGAGCGACGGTCATGTTGTCGAGCCACCGGGCAGCATGGTGATATCGATCCAGGTACTCCGCGAGGTGACCGACAATTTCAGCGAGGGAAACATATTGGGGCGAGGTGGGTTCGGTGTGGTATACAAGGGGGAGCTGCACGACGGAACCAAGATTGCTGTGAAGCGGATGGAGGCAGCGAAGGTGAGTAGCAAGGGGCTGAGCGAGTTCCAGGCAGAGATCGCCGTCCTTACCAAGGTTAGACATCGGCACCTCGTGGGTCTCCTCGGGTACTGTATCGACGGCGGGGAGAAGATGCTGGTGTACGAGTATATGCCCCAGGGGCCGCTGAGTCTGCATCTGTTTGAATGGGCGGCGGCCGGGCTGAGGCCGCTAGAATGGAAACAGAGGCTTAGCATTGCCCTCGATGTCGCCCGCGGAGTTGAGTACCTGCACAGCCTTGCACAGACGAGCTTCATTCACAGAGATCTGAAGCCCTCTAATATCCTTCTGGGCGACGACATGAGGGCCAAGGTCTCGGATTTCGGGTTGGTCAAGCTGGCCCCTGATGGAAAGTTTTCTGTTGAAACCAGGCTGGCCGGCACTTTTGGTTATCTGGCCCCTGAATACGCAGTGACGGGTCGGGTGACAACCAAGGTGGACGTGTTCAGCTTTGGTGTGGTGCTGATGGAGCTGATAACTGGACGCAAGGCTCTGGATGAGACCCAACCAGAGGAGAGCATGCACTTGGTCACATGGTTCCGGCGTACGTTCATGAGCCGCGAGGGTTTCCGCAAGGCTATTGACCCAGTCCTTGACGTGACTGACGATACCTTCCAAAATATCTGCAAAGTGGCGGAGCTGGCTGGTCACTGCACCTCTCGGGAGCCCTTCCAGCGCCCTGACATGGGCCACGCAGTCAATGTGCTCTCCCCCCTCGTCGAGCAGTGGAAGCCTGCCAAAACGGATTCCGAGGACTGCTACGGTATTGACCTTGATGTGCCCCTCTCCCAGGCGCTCAAGCGATGGCAGGCCGTTGAAGGAGGGGTATCGTCCCATGGAGACGAGGACTACTCACTCAGGAGCTTGGACAATACTCAGACAAGCATTCCCAACAAGCCCTTGGGATTTGCAGACTCCTTTCAATCAGCTGATTGCCGATGA___TCAATCACCCACAACAATCAGAAATACAGAATTGGGGGAACAGAATTGCAGAGCTTTCAACATTCAGTCATCCATGGTTTCCATTGATTGTATCAGAGGAGGTTTCAGCTTTTTGGTTTTTAAATTACAGCTCTCGGATTGCAAATAATCTTGATATCTGTGCCCCCATGCTCACTTTTTACATGGATTTGAAATGCTTCAGAAGAGAAAACATTGCAGGCCTTCTGGTTTGGATTGGATCAGCCATTGTTGATTGCATAGATTACTGGTGGTCCTTGTTCTTCTATCCTTACTGAGTGCATGGATTTTTAATGGTCCAGAGAGTAGATTTGTAATGGATACTGCTTTGTAATCCTTTGAATCACTGTACAGAGATTCTTTTAGTTTCTTTCCTTCAGACTATCTGCAGTAGCATCAACAAATTTGTTTTGCAAGCTACCATTTTAGTACAGTGAAAATATGATAGGAGGATAGAAGGTATTAATTATGTTAAAATATAAGGTTTTCTGTGCATCTTCTCATGGATTTATGAAAGGGATTTTGCTTACACAATTGTATTGTGATCTCCAATTTTTGTGTTGTAATGGAGCCACGCTCACTTTCAGCGGTTAGCACATACTTCTAAATATAAATCATATTAG

Fln Alignment:

Contig2117___SRKRQKSTRVQSPTTVAI---NPHRRGPSASSDQELLKMSIGPSVSDFVPSINHSGPSDGHVVEPPGSMV-ISIQVLREVTDNFSEGNILGRGGFGVVYKGELHDGTKIAVKRMEAAKVSSKGLS--------EFQAEIAVLTKVRHRHLVGLLGYCIDGGEKMLVYEYMPQGPLSLHLFEWAAAGLRPLEWKQRLSIALDVARGVEYLHSLAQTSFIHRDLKPSNILLGDDMRAKVSDFGLVKLAPDG-KFSVETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVVLMELITGRKALDETQPEESMHLVTWFRRTFMSREGFRKAIDPVLDVTDDTFQNICKVAELAGHCTSREPFQRPDMGHAVNVLSPLV
B8LKY1______________SRRSKVDTSITSTGTQSAETKNPNDIGKTLPTSQT------GPSISTASTESIVSTPRLEEQLRVSSQLLKFTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFR---KGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLS-GHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
931			66	33	0.997452
932	66	33			0.997452
961	50		50		1.0
967	75		25		0.996473
1370	20			80	0.995493
1401		20		80	0.995493
1479		50	50		1.0
1530		75	25		0.996473
1561	25		75		0.996473
1585		75		25	0.996473
1608	75		25		0.996473
1802			60	40	1.0
1808	20	80			0.995493
1851		14	85		0.993533
2057			40	60	1.0
2109	83		16		0.994512
2273		16		83	0.994512
2304		40		60	1.0
2306	60		40		1.0
2354		85		14	0.993533
2953		87	12		0.992554
3129		12		87	0.992554
3198			85	14	0.993533
3386			95	4	0.996252
3457	88		3	7	0.999079
3603	93			6	0.999153

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain