SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2116

Length: 1520 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2116

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF248 multi-domain protein	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Ankyrin-like protein	-	-	1.256e-18	-

Source	Gene names
Sma3	AT1G31850; AT4G19120; AT4g14360; AT4g19120; At1g04430; At1g04430/F19P19.11; At1g19430; At1g29470; At1g31850; At1g77260; At2g34300; At2g39750; At2g40280; At3g23300; At3g51070; At4g14360; At4g19120; At5g04060; At5g06050; At5g14430; At5g64030; B1065E10.47; B

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56080.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr3:20810526-20812988 REVERSE LENGTH=610	55%
RefSeq	Arabidopsis thaliana	NP_567033.2	dehydration-responsive protein-like protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002300957.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: your sequence is shorter than subject: 364 - 637

Fln protein: IQLALERGIPAILGVIGTQRLVFPSNVYDVVHCARCRVHWHGDGGKPLLEINRILRPGGYFIWSATPVYRDDQAHRDVWTAVMALTESMCWKLVLKTMAKTGVGIAIYQKPTSSSCYMQRKQQDPPLCQEDDRSDAAWYTPLQRCIHQIPSESSVHGSMWPSHWSLRLEEEPLWLKYKLGSTNGSSRGFHKDTAYWRDVVQNLYWHDLSIDWSIIRNVMDMRAGFGGFAAALIEQPVWVMNVIPIDGPDTLPLIFDRGLFGVYHDWCESFNTYPRTYDLLHADHLFGDLASRCNSVDTILEMDRILRPQGWVIVRDTAMIVKQLLPVMQSLHWRTNIKITQTEENLIVAQKGSWRPETKKVLA*

Protein Length: 365

Fln nts: ATTCAGCTTGCTCTTGAGCGGGGCATTCCAGCAATTTTAGGGGTTATTGGCACGCAAAGGCTTGTATTCCCAAGCAATGTATATGATGTGGTACATTGTGCAAGATGTAGGGTGCACTGGCATGGAGATGGTGGAAAACCTTTACTAGAGATCAACAGAATTCTTAGACCGGGAGGATATTTTATATGGTCTGCAACTCCAGTTTATCGGGATGACCAAGCACATCGTGATGTATGGACAGCTGTAATGGCGTTGACAGAGTCGATGTGCTGGAAACTAGTTCTGAAAACAATGGCCAAAACAGGGGTTGGAATTGCCATCTATCAGAAACCTACTTCAAGTTCGTGTTATATGCAGAGGAAACAACAAGATCCTCCTTTATGCCAGGAGGATGATAGATCCGATGCTGCCTGGTATACACCACTGCAAAGATGCATTCATCAGATACCTAGTGAAAGTTCTGTTCATGGTTCTATGTGGCCATCACATTGGTCATTACGACTTGAAGAGGAACCATTATGGCTGAAGTATAAACTAGGAAGCACAAATGGTTCAAGTAGAGGCTTCCACAAAGACACAGCGTACTGGAGGGATGTTGTACAAAATTTGTACTGGCATGATTTAAGTATTGATTGGTCAATCATCCGAAATGTGATGGATATGAGAGCAGGTTTTGGAGGGTTTGCCGCAGCTCTTATTGAGCAACCAGTTTGGGTAATGAATGTCATTCCAATTGATGGGCCAGACACACTACCCTTGATATTTGATAGAGGCCTGTTTGGGGTTTATCATGATTGGTGTGAATCGTTCAACACTTATCCGCGAACATACGATCTCCTCCATGCAGACCATCTCTTCGGTGATTTAGCATCAAGGTGTAATTCGGTTGATACCATTTTAGAAATGGATAGAATCTTGAGGCCACAAGGATGGGTTATAGTGCGTGATACTGCCATGATTGTCAAGCAGTTATTACCTGTCATGCAATCCTTACATTGGCGCACCAATATTAAAATCACGCAGACGGAAGAAAATCTTATTGTTGCCCAGAAGGGTAGTTGGCGTCCTGAGACAAAAAAAGTCCTCGCTTGA___TTGTGGTGGGATGGAATTAAGGATTTAGATTCGTTTTTCAACTAACATGGAATGACCATTATGCCTCCGACGCACATAAAGCCCTGCTCCAAGAATAGGGAAATCTAGAGGCTGATCATGTCTGATAAAAGAGGCATTCAACCCGTCACGATGTTTCAGTGATTTACTAATGATGCAGGTCGGCCAATTTTTGAAATTTATCAAAATACAATTAAGCTGTGCCTTTGCCTAAACTAAACATTTGTAACAATATTTTTCACAATTCTTAATATTGGAGCATTGATTATTCTTCAAGTTAGAAGATAGACAAAGTCGACCTTAAAATTGTCTAAAATTCTGTTCCTCATAAACAATGGGGTGGGAGAATTTGTTTCAGGATCAGATTTTGAGGTCATTTGTATCTCAACAATATGAGTAAATTATTTTCT

Fln Alignment:

Contig2116___IQLALERGIPAILGVIGTQRLVFPSNVYDVVHCARCRVHWHGDGGKPLLEINRILRPGGYFIWSATPVYRDDQAHRDVWTAVMALTESMCWKLVLKTMAKTGVGIAIYQKPTSSSCYMQRKQ-QDPPLCQEDDRSDAAWYTPLQRCIHQIPSESSVHGSMWP--SHWSLRLEEEPLWLKYKLGSTNGSSRGFHKDTAYWRDVVQNLYWHDLS--IDWSIIRNVMDMRAGFGGFAAALIEQPVWVMNVIPIDGPDTLPLIFDRGLFGVYHDWCESFNTYPRTYDLLHADHLFGDLASR-CNSVDTILEMDRILRPQGWVIVRDTAMIVKQLLPVMQSLHW
B8LKS3______________IQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQDEENLQIWNAMSDLVKRMCWKVASKRDQTV-----IWVKPLTNDCYLKRAPGTKPPLCNSEDDPDASWHVLMKACI--TPYSDKIHHAKGSGLAPWPKRLTAPPPRL-VELGI---SEEDFVKDTKAWRQRV-NSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSDIDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain