SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2110

Length: 2243 nt

UniGene Fasta

>sp_v3.0_unigene2110
GTATCTGGTTATAAAGCGTTTTTGAACAGGATTTCCTGCATCTGATCTCATATGCTTTTCTATAATGGCAGGGCTGGGTAGCAGGATTGTCGGTGCAACAAAGTTGGGTACAATAGCCCCGTGGGTAGGCCTTGTAGCTGCTGTGTGTATACAGGTGTTGGCTGGAAATGCATACAACTTTCCTCTGTATTCGTCCAGGTTGAAGCAAACTCTTGGTTACAATCAGGTACAACTGAGCAACTTGGGAGTGGCTAATGATATCGGAGAGAACGTGGGCCTTCTTGCTGGCCTACTTTGCAATAAAATCCCACCTTGGGCTTTACTTTTGATCGGAGCTACTGCTAGTTTTGTTGGGTATGGCGTACTTTGGCTTGTTGTCAGCCAGACCATCAGTTCTTTGCCTTATTGGGTGGTGTGGTTTGCACTATGTGTTGGTACAAACAGTGCGACATGGTTCAATACTGCTGTTCTTGTCACAAACATGCGGAATTTCCCTCTCAGCAGGGGCACATTGGCAGGCATCCTCAAAGGTTATGTTGGAATCAGTGCTGCAGTATATACAGAAATCTACATTGGAATGCTTGACAAGAATTCAGTGAAGCTACTGTTTTTTCTGACTGTGGGACTTCCTGCTGTCTGTCTTCTTGTGATGTATTTTGTTAGGCCTTGCACACCATCTATGGGAGAAGATACAGGGGAGCATGGATACTTTATCTTTATCCAAGCTTCCAGCATTGTTTTGGCAATTTATCTTCTTGCAACTGCTATTATAGATGATATTTGTCTGTGGATGAAGGTCTTATATCCAAGATATTTGTAGGGTTGATGTTCCTCCTCCTTCTTGCACCAATTGGAATTCCCCTTAAACTGGCATTTCATGCAATCAAACATGATCATGGGGATGTTCAAAAATCTCAACCTGACAATGTTGAGGAGCCACTTCTAGCTACAGAAAATCCTTCTGGTCAAAATTCTCCATCCGATATGGAAGATAAGGATGGAACTCAACGTGAAGGCATAAACCTTTGTGTAGCACACCCATCTTTTGACTACGATAATGACTTGGACCTGGAGATTCTTTTAGCTGAAGGAGAGGGAGCTGTCAGGAAAAAGAGAAGACCAAGAAGAGGGGAAGACTTCAAACTCCCGCCAACAAGCTCTTGTGAAGGCCGACTTTTGGCTTCTCTTTATAGTCTACTTTTGTGGTGTAGGTTCTGGTGTTACGGTGCTGAATAATTTGGCACAAATTGGACTTGCTGAAGGTTTTAGTGATGTCACAATTTTGCTCTCATTGTTTAGTGTCTCCAACTTCATTGGGCGTATTGGGGGTGGTGCAGTATCAGAACACTTTGTCAGGTTGAAAGCAACACCTCGAACAGTTTGGATGACAGTTACCCAGACAATCATGATTGCAGTCCATCTTTTCTTTGCATCAGCTATTACAGGATCCCTCTATGTTGGTTGTGCTCTGTTGGGCATCTGTTATGGAGTTCAGTTCTCTGTTATGGTGCCCACCGCCTCTGAGCTCTTTGGGCTGAAGCATTTTGGAATGATTTATAATTTCCTGACCATAGGTAATCCCTTGGGGGCTTTCTTCTTTTCTGGACTCCTTGCGGCATATATCTATGATAAAGAAGCAGAAAAACAAAGTGGTGTGTTCCATCCGGAGTTTTTGACAAGCTCAGATGTTAATTGTGTGGGTGCCAGTTGCTTCAGGCTCACTTTTCTGATTATGGCAGGGGTGTGTGCTGTGGGTACTCTTTTGAGCATGATTCTTACATTCAGGATAAGGCCGGTATATGAAATGTTGTATGCAGGAGGTTCTTTTCGCATCCCTGGGACTGCAGGTTCAACACATCAGCAAAAGTAGGCTATAATAATTTCCAATATTAACATCTGTGGATGTTCTTTATGTTATGCTCATTAAGAGTTTGGTTACAAATTACCATACAATAAAACTCAAGGCAAATACTAGCTTTTATATTCTTGCCAGGTATTGATGGCTTTATATTCAAGGATCAAACTGTACACAGTTTTGGAAGGACCTTATTAGCTTGCAGCAACGAGGGTCAACGTGTAATTTGTAGTTCACAGTTTTTCTATTTCTTGATGTTTTTTCTTCTCACAAAATAAAAACAAAAGTTCAGCACTGAGCATTCAGTTCAGTAGCTCCCTCTTGTATTTATTAGAGAAATGAAAGAAAACAATAGAAGATATTGGAGTCTTATAAGCTACTCTCTACC

Ace file of the UniGene sp_v3.0_unigene2110

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin-like protein [Oryza sativa Japonica Group] dbj\|BAC98533.1\| nodulin-like protein [Oryza sativa Japonica Group]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Nodulin-like protein	-	-	2.787e-19	-

Source	Gene names
Sma3	AT4G34950; At1g80530; At3g01930; At5g14120; CTV.14; F1C9.29; F28J7.26; GSVIVT00005663001; GSVIVT00033229001; GSVIVT00036100001; GSVIVT00037868001; GSVIVT00037871001; M4E13.10; OJ1112_D12.6; OJ1575_B01.18; OSIGBa0096P03.3; OSIGBa0112M24.2; OSJNBa0014K14.3;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80530.1	Major facilitator superfamily protein chr1:30278224-30280247 REVERSE LENGTH=561	47%
RefSeq	Arabidopsis thaliana	NP_178168.1	nodulin family protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002331009.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 602 - 626

Fln protein: MAGLGSRIVGATKLGTIAPWVGLVAAVCIQVLAGNAYNFPLYSSRLKQTLGYNQVQLSNLGVANDIGENVGLLAGLLCNKIPPWALLLIGATASFVGYGVLWLVVSQTISSLPYWVVWFALCVGTNSATWFNTAVLVTNMRNFPLSRGTLAGILKGYVGISAAVYTEIYIGMLDKNSVKLLFFLTVGLPAVCLLVMYFVRPCTPSMGEDTGEHGYFIFIQASSIVLAIYLLATAIIDDICLWMKVLYPRYL*G*CSSSFLHQLEFPLNWHFMQSNMIMGMFKNLNLTMLRSHF*LQKILLVKILHPIWKIRMELNVKA*TFV*HTHLLTTIMTWTWRFF*LKERELSGKREDQEEGKTSNSRQQALVKADFWLLFIVYFCGVGSGVTVLNNLAQIGLAEGFSDVTILLSLFSVSNFIGRIGGGAVSEHFVRLKATPRTVWMTVTQTIMIAVHLFFASAITGSLYVGCALLGICYGVQFSVMVPTASELFGLKHFGMIYNFLTIGNPLGAFFFSGLLAAYIYDKEAEKQSGVFHPEFLTSSDVNCVGASCFRLTFLIMAGVCAVGTLLSMILTFRIRPVYEMLYAGGSFRIPGTAGSTHQQK*

Protein Length: 603

Fln nts: GTATCTGGTTATAAAGCGTTTTTGAACAGGATTTCCTGCATCTGATCTCATATGCTTTTCTATA_-_ATGGCAGGGCTGGGTAGCAGGATTGTCGGTGCAACAAAGTTGGGTACAATAGCCCCGTGGGTAGGCCTTGTAGCTGCTGTGTGTATACAGGTGTTGGCTGGAAATGCATACAACTTTCCTCTGTATTCGTCCAGGTTGAAGCAAACTCTTGGTTACAATCAGGTACAACTGAGCAACTTGGGAGTGGCTAATGATATCGGAGAGAACGTGGGCCTTCTTGCTGGCCTACTTTGCAATAAAATCCCACCTTGGGCTTTACTTTTGATCGGAGCTACTGCTAGTTTTGTTGGGTATGGCGTACTTTGGCTTGTTGTCAGCCAGACCATCAGTTCTTTGCCTTATTGGGTGGTGTGGTTTGCACTATGTGTTGGTACAAACAGTGCGACATGGTTCAATACTGCTGTTCTTGTCACAAACATGCGGAATTTCCCTCTCAGCAGGGGCACATTGGCAGGCATCCTCAAAGGTTATGTTGGAATCAGTGCTGCAGTATATACAGAAATCTACATTGGAATGCTTGACAAGAATTCAGTGAAGCTACTGTTTTTTCTGACTGTGGGACTTCCTGCTGTCTGTCTTCTTGTGATGTATTTTGTTAGGCCTTGCACACCATCTATGGGAGAAGATACAGGGGAGCATGGATACTTTATCTTTATCCAAGCTTCCAGCATTGTTTTGGCAATTTATCTTCTTGCAACTGCTATTATAGATGATATTTGTCTGTGGATGAAGGTCTTATATCCAAGATATTTGTAGGGTTGATGTTCCTCCTCCTTCTTGCACCAATTGGAATTCCCCTTAAACTGGCATTTCATGCAATCAAACATGATCATGGGGATGTTCAAAAATCTCAACCTGACAATGTTGAGGAGCCACTTCTAGCTACAGAAAATCCTTCTGGTCAAAATTCTCCATCCGATATGGAAGATAAGGATGGAACTCAACGTGAAGGCATAAACCTTTGTGTAGCACACCCATCTTTTGACTACGATAATGACTTGGACCTGGAGATTCTTTTAGCTGAAGGAGAGGGAGCTGTCAGGAAAAAGAGAAGACCAAGAAGAGGGGAAGACTTCAAACTCCCGCCAACAAGCTCTTGTGAAGGCCGACTTTTGGCTTCTCTTTATAGTCTACTTTTGTGGTGTAGGTTCTGGTGTTACGGTGCTGAATAATTTGGCACAAATTGGACTTGCTGAAGGTTTTAGTGATGTCACAATTTTGCTCTCATTGTTTAGTGTCTCCAACTTCATTGGGCGTATTGGGGGTGGTGCAGTATCAGAACACTTTGTCAGGTTGAAAGCAACACCTCGAACAGTTTGGATGACAGTTACCCAGACAATCATGATTGCAGTCCATCTTTTCTTTGCATCAGCTATTACAGGATCCCTCTATGTTGGTTGTGCTCTGTTGGGCATCTGTTATGGAGTTCAGTTCTCTGTTATGGTGCCCACCGCCTCTGAGCTCTTTGGGCTGAAGCATTTTGGAATGATTTATAATTTCCTGACCATAGGTAATCCCTTGGGGGCTTTCTTCTTTTCTGGACTCCTTGCGGCATATATCTATGATAAAGAAGCAGAAAAACAAAGTGGTGTGTTCCATCCGGAGTTTTTGACAAGCTCAGATGTTAATTGTGTGGGTGCCAGTTGCTTCAGGCTCACTTTTCTGATTATGGCAGGGGTGTGTGCTGTGGGTACTCTTTTGAGCATGATTCTTACATTCAGGATAAGGCCGGTATATGAAATGTTGTATGCAGGAGGTTCTTTTCGCATCCCTGGGACTGCAGGTTCAACACATCAGCAAAAGTAG___GCTATAATAATTTCCAATATTAACATCTGTGGATGTTCTTTATGTTATGCTCATTAAGAGTTTGGTTACAAATTACCATACAATAAAACTCAAGGCAAATACTAGCTTTTATATTCTTGCCAGGTATTGATGGCTTTATATTCAAGGATCAAACTGTACACAGTTTTGGAAGGACCTTATTAGCTTGCAGCAACGAGGGTCAACGTGTAATTTGTAGTTCACAGTTTTTCTATTTCTTGATGTTTTTTCTTCTCACAAAATAAAAACAAAAGTTCAGCACTGAGCATTCAGTTCAGTAGCTCCCTCTTGTATTTATTAGAGAAATGAAAGAAAACAATAGAAGATATTGGAGTCTTATAAGCTACTCTCTACC

Fln Alignment:

Contig2110___GTIAPWVGLVAAVCIQVLAGNAYNFPLYSSRLKQTLGYNQVQLSNLGVANDIGENVGLLAGLLCNKIPPWALLLIGATASFVGYGVLWLVVSQTISSLPYWVVWFALCVGTNSATWFNTAVLVTNMRNFPLSRGTLAGILKGYVGISAAVYTEIYIGMLDKNSVKLLFFLTVGLPAVCLLVMYFVR--PCTPSMGEDTGEHGYFIFIQASSIVLAIYLLA
B8LRH5______________GSVIKWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYLLA

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
791	25		75		0.996473
864	20	80			0.995493
865	20			80	0.995493
867	80		20		0.995493
868	80			20	0.995493
1002	16		83		0.994512
1003		16	83		0.994512
1005	83			16	0.994512
1006		83		16	0.994512
1405	88		11		0.923564
1463		10	90		0.90298
1466		10		90	0.90298
1469			90	10	0.90298
1471		10		90	0.90298
1472		90		10	0.90298
1475			10	90	0.90298
1476		10		90	0.90298
1477			90	10	0.90298
1479			90	10	0.90298
1481	80		20		0.999996
1504		20		80	0.999996
1509		10		90	0.90298
1816		8		91	0.999807
1822	90	9			0.999872
1890	75			25	1.0
1982		26		73	1.0
2067		66		33	1.0
2078	13		86		0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain