SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2097

Length: 1220 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2097

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease-like protein [Arabidopsis thaliana] gb\|AAM15292.1\| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] gb\|AAD21712.2\| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] gb\|AEC10194.1\| aspartyl p	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Aspartic proteinase nepenthesin-1, putative	-	-	3.105e-06	-

Source	Gene names
Sma3	ACRE36; At1g01300; At2g42980; At3g59080; At3g61820; F15G16.210; F17J16_130; F6F3.10; GSVIVT00008623001; GSVIVT00017643001; GSVIVT00018874001; OJ1115_D04.13; OSJNBa0022J22.7; Os01g0140100; Os01g0598600; Os02g0314600; Os05g0590000; OsI_00323; OsI_02707; OsI

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G42980.1	Eukaryotic aspartyl protease family protein chr2:17875005-17876588 REVERSE LENGTH=527	55%
RefSeq	Arabidopsis thaliana	NP_181826.1	aspartyl protease-like protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002307559.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSK7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 129 aas, putative chimeric sequence, your sequence is shorter than subject: 169 - 383

Fln protein: AAGDRCAGNGRNSSSPCRYFYWYGDRSNTTGDLSWETFSVNVTGRRGPLRVPRVIFGCGHANRGLFHGAAGLLGLGRGQLSFTSQLRELYGHKFSYCLVDRDSNASVSSTLVFGEDERLVAHRDLQYTALIQTATSVDTFYYVRIAAVTVGGERIDVPSGAFDITAEG*

Protein Length: 170

Fln nts: AGCAGCCGGTGACCGCTGTGCGGGCAACGGGCGAAACTCGTCGTCGCCTTGCCGATATTTTTACTGGTATGGTGACCGGTCCAACACCACTGGCGACCTGTCGTGGGAAACCTTTTCCGTCAACGTGACCGGCCGTCGTGGACCGCTGCGAGTACCGCGGGTCATCTTCGGCTGCGGGCATGCGAACCGGGGGCTCTTCCACGGCGCCGCCGGTCTCCTTGGTCTCGGCCGCGGGCAGCTGTCCTTCACCTCGCAGCTCCGGGAGCTTTACGGCCACAAGTTTTCCTACTGCCTCGTCGATCGTGACAGCAACGCGTCGGTCAGCAGCACCTTGGTCTTCGGTGAGGACGAGCGCCTGGTTGCCCACCGGGACCTCCAGTACACCGCCCTAATCCAGACCGCGACCTCGGTCGACACCTTCTATTACGTCCGCATCGCTGCTGTCACAGTTGGCGGCGAGCGCATCGACGTGCCATCGGGCGCCTTCGACATAACGGCGGAGGGGTAa___TAACGGCGGAGGGTTACGGCGGCACCATCGTCGATTCCGGAACCACGCTCACCTACCTCGTGCAGCCGGCTTACGAGAAGATCCGATCGGCGTTCGAAGCCAAGATCACCTACCCGCGCGTGGAATTCCCGCCACTCGGGCCCTGCTACAACGTTTCCGGCGTCGGTGACGTGAAGCTGCCAGAATTCAGCATTATCTTTACCGATGGGGCCGTGTGGCGGTTCCCGGCGGAGAATTATTTTATTCAGCTGGACCCGGAGGAGGCCGTGGTCTGCTTGGCCATCCTGGGGACTCCGCCGGGCTCTCTTTCAATAGTAGGGAACTACCAGCAGCAGAATTTCCACATTCTTTACGATGTTGATAATTCACGCCTCGGTTTCGCCCCCATGACGTGCGCTGCAATTTGATCCACAGAAGAAACCCCGTTGCCCGGGGTCGTCTAATCTACTTCTCCGTTGTTTTCGGTTGTCCGGAGAATTCGAACTCCGGACATGGCCGTTGCTTATCTAAATTCATTGATAGGATAGTTAATTTTTCCGGAGAAACCGTCTGAGGTTTTTCCGGGCATTTGTGATTAAGTTGGGTACACTAGTGAAATTGTGAAAATGTTTAGGGTTTTGTTTTTTTCTTGTAGAAATTTACAATATATTCTTTTGTTGTAGAAATTGGGGAATAAAGCCTGTTTATTTTTTTAAGACTACTCTGAAGTCTA

Fln Alignment:

Contig2097___NSSSPCRYFYWYGDRSNTTGDLSWETFSVNVTGRRGPLRVPRVIFGCGHANXXXXXXXXXXXXXXXXXXSFTSQLRELYGHKFSYCLVDRDSNASVSSTLVFGEDERLVAHRDLQYTALIQTATSVDTFYYVRIAAVTVGGERIDVPSGAFDITAEG
C0PSK7______________NNDGDCEYVYPYGDRSSTSGILSDETFSISSQS------LPNITFGCGHDN-QGFDKVGGLVGFGRGSLSLVSQLGPSMGNKFSYCLVSR-TDSSKTSPLFIGNTASLEA-TTVGSTPLVQSSST--NHYYLSLEGISVGGQSLAIPTGTFDIQSDG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1072	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain