SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2096

Length: 2167 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2096
AATGTCACCGAGCCAGTTCCAGGTCTCATACAGGTGAGGGACTCTCACAGTATCTTGAAGCTCGGTAGCTTGAGGCAGCTCATGCCGTTGATTTGGAGAAGGAATCTGCTGCCAGCTTGGATCTTTGGGATAGAAGAATGCTGTTTGGAGTGTTATTTGTAACAGAGATTTATGGGTTAAAGTTGCATTATATGGGTGTTGGCCAAGTAAAACAATACATTGGCACTCATCAAGGGCTCTATGCCTGGCTGCTATCTTTATCTGACCAAAAGAGTGAGTTTTGATATTGTCACTCGGATCTTGAACCTGCTGAGTGTTTTAGTGATCCTGGCTGAAGACCCATTGATGCAACCAAGTGCAGGTTCTTTTACGGTGTTCAAACCCTAAGAGCTTCCTTTTTGCAAGTTTCTTCATTTTCAGATTCTGTATTTGATTGAGTGATCCTCTTTTGTGGATCAAACAATTTGGTTGGATGGAAAATAAGGTTAGAGATGGAACCATAGAAGATTCTTCATCCAGGCCATCTTCTTCCAATACTGAAATGGCAGCAGCAAGTTCAATATCACAATCAGGTGCACCTAAAGCACCACGGAGATTTGTTAGGCAACAGATACCGGACTCAATTTTGAATGATCCTGCACTTAAGGCTGCTATGGCAGTTTTGCCTCCCAACTATAATCTGGAAATACCGAAATGCATTTGGAGGATTAAGCAATCTGGAGCCAAGCATGTAGCACTGCAATTTCCAGAGGGCCTGCTTATGTACTCCCTCACAATTTGTGATATTTTAGAGGCATTTACTGATGTTGATGAATGCTTTGTACTTGGGGATGTTACGTATGGAGCATGCTGTGTTGATGATTACTCAGCTACAGCACTTGGGGCTGATTTTCTCATTCACTATGGTCATAGCTGTTTAGTCCCAATTGATTTTACAAGTATCCCATGCTTATATGTCTTTGTGGATATACAAATTGATGTGCAACATCTAGTTGAGACAATAAGGTATAACTTCAAACCAGAAGATAGACTTGCTTTAGCTGGGACTATCCAGTTTTCAACTGCCATCCATGCAGCCAAAGCTGCTCTGGCAGATCAGTATCCAAACATCAATGTTCCTCAAGTGAAACCACTATCGCCAGGAGAGGTTCTTGGGTGCACAGCGCCATCGCTGCCCCGTGGCACCCTTGATACTGCTGTTTTTGTGTCTGATGGCCGGTTTCATCTTGAAGCTTTTATGATAGCAAATCCTAAAGTTCAGGTTTTCCGGTATGACCCTTATTTGAAAGTCTTGGTTTTAGAAAAATATGATCACAAGGGTATGAAAGATACCCGAAAGAAATCCATCTTGCAGGCACAGAGAGGTAAACAGTGGGGCATAATTCTGGGAACTTTAGGGCGACAAGGAAATCCTAAAATACTGAATCACATTGAGCAACGTTTGGAAGAGAAGGGTATCTTCTTTACAGTTTTCCTCATGTCTGAAATCTCACCCTCTAAAATTTTACTTTTTGGGGATTCTGTTGATGTTTGGGTGCAGATTGCTTGTCCCCGTCTTTCAATTGATTGGGGTGAAGCCTTTACTAAGCCTTTGCTGACACCATTCGAGGCAGAAGTGGCACTTGGCTTTGTGCAGCCTTGGTGGAAGGGAGAAACTGAGCAGGAGGATGCTTGCAGACATATAGTGCAGGGTCAGGTTCAGTCATGTGGTTCTTGTGGAGAAACAAGGTCCAGTGTTGTAACTTGTAATAAGGATTCATGCTGTGCTGGCAGAGGTTCTGTAAATGGATCTGTAAATGTAATAGATATTTCCAGGACCAAAAGTGAGGAAAGTTGTCTGCCAGATGGGATATCAGACAATGCTGTATATCCTATGGATTACTATGCTCGAGATGGAGGATCCTGGAATTCTGCATATATTCAGAAGGGTCCTGCGCAAAGAAGATGCCAAACAGTGCAAGATAATGTGAAAGGTCATTAAATGTGCTGTCTTGATTCTCATATCAAATGTACCATGTAGTCTTATCTTTTGGTTGTGAATCCTTTTGTTCAATTGCTTGGGCTTCCTTGTACTACTTTCATTTTAAGAAAAAGGTTAATACGTGTCACACAATCTTAATATATCTTTCAATTTAATTGATTCTTATGTCTAACTACTTTGCAGGTA

Ace file of the UniGene sp_v3.0_unigene2096 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Diphthamide biosynthesis protein 1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT0_PHYPA	-	-	0.0	62%
FL-Next	sp=Diphthamide biosynthesis protein 1; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	62%

Source	Gene names
Sma3	At5g62030; CHLREDRAFT_119360; GSVIVT00023426001; MICPUCDRAFT_48766; MICPUN_89023; OJ1293_E04.32; OSTLU_43090; Os02g0815600; OsI_09426; OsJ_08861; Ot15g00760; P0643F09.5; PHATRDRAFT_20589; PHYPADRAFT_183520; POPTRDRAFT_242334; POPTRDRAFT_780335; RCOM_13748

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	Diphthamide synthesis, DPH1/DHP2	IPR002728	-	-
Sma3		IPR014809	-	-
Sma3	Diphthamide synthesis, DHP1	IPR016435	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62030.1	diphthamide synthesis DPH2 family protein chr5:24919046-24920407 FORWARD LENGTH=453	56%
RefSeq	Arabidopsis thaliana	NP_201009.1	diphthamide synthesis DPH2 family protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002325444.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SCT0

Fln msg: your sequence is longer than subject: 503 - 463

Fln protein: MENKVRDGTIEDSSSRPSSSNTEMAAASSISQSGAPKAPRRFVRQQIPDSILNDPALKAAMAVLPPNYNLEIPKCIWRIKQSGAKHVALQFPEGLLMYSLTICDILEAFTDVDECFVLGDVTYGACCVDDYSATALGADFLIHYGHSCLVPIDFTSIPCLYVFVDIQIDVQHLVETIRYNFKPEDRLALAGTIQFSTAIHAAKAALADQYPNINVPQVKPLSPGEVLGCTAPSLPRGTLDTAVFVSDGRFHLEAFMIANPKVQVFRYDPYLKVLVLEKYDHKGMKDTRKKSILQAQRGKQWGIILGTLGRQGNPKILNHIEQRLEEKGIFFTVFLMSEISPSKILLFGDSVDVWVQIACPRLSIDWGEAFTKPLLTPFEAEVALGFVQPWWKGETEQEDACRHIVQGQVQSCGSCGETRSSVVTCNKDSCCAGRGSVNGSVNVIDISRTKSEESCLPDGISDNAVYPMDYYARDGGSWNSAYIQKGPAQRRCQTVQDNVKGH*

Protein Length: 504

Fln nts: AATGTCACCGAGCCAGTTCCAGGTCTCATACAGGTGAGGGACTCTCACAGTATCTTGAAGCTCGGTAGCTTGAGGCAGCTCATGCCGTTGATTTGGAGAAGGAATCTGCTGCCAGCTTGGATCTTTGGGATAGAAGAATGCTGTTTGGAGTGTTATTTGTAACAGAGATTTATGGGTTAAAGTTGCATTATATGGGTGTTGGCCAAGTAAAACAATACATTGGCACTCATCAAGGGCTCTATGCCTGGCTGCTATCTTTATCTGACCAAAAGAGTGAGTTTTGATATTGTCACTCGGATCTTGAACCTGCTGAGTGTTTTAGTGATCCTGGCTGAAGACCCATTGATGCAACCAAGTGCAGGTTCTTTTACGGTGTTCAAACCCTAAGAGCTTCCTTTTTGCAAGTTTCTTCATTTTCAGATTCTGTATTTGATTGAGTGATCCTCTTTTGTGGATCAAACAATTTGGTTGG_-_ATGGAAAATAAGGTTAGAGATGGAACCATAGAAGATTCTTCATCCAGGCCATCTTCTTCCAATACTGAAATGGCAGCAGCAAGTTCAATATCACAATCAGGTGCACCTAAAGCACCACGGAGATTTGTTAGGCAACAGATACCGGACTCAATTTTGAATGATCCTGCACTTAAGGCTGCTATGGCAGTTTTGCCTCCCAACTATAATCTGGAAATACCGAAATGCATTTGGAGGATTAAGCAATCTGGAGCCAAGCATGTAGCACTGCAATTTCCAGAGGGCCTGCTTATGTACTCCCTCACAATTTGTGATATTTTAGAGGCATTTACTGATGTTGATGAATGCTTTGTACTTGGGGATGTTACGTATGGAGCATGCTGTGTTGATGATTACTCAGCTACAGCACTTGGGGCTGATTTTCTCATTCACTATGGTCATAGCTGTTTAGTCCCAATTGATTTTACAAGTATCCCATGCTTATATGTCTTTGTGGATATACAAATTGATGTGCAACATCTAGTTGAGACAATAAGGTATAACTTCAAACCAGAAGATAGACTTGCTTTAGCTGGGACTATCCAGTTTTCAACTGCCATCCATGCAGCCAAAGCTGCTCTGGCAGATCAGTATCCAAACATCAATGTTCCTCAAGTGAAACCACTATCGCCAGGAGAGGTTCTTGGGTGCACAGCGCCATCGCTGCCCCGTGGCACCCTTGATACTGCTGTTTTTGTGTCTGATGGCCGGTTTCATCTTGAAGCTTTTATGATAGCAAATCCTAAAGTTCAGGTTTTCCGGTATGACCCTTATTTGAAAGTCTTGGTTTTAGAAAAATATGATCACAAGGGTATGAAAGATACCCGAAAGAAATCCATCTTGCAGGCACAGAGAGGTAAACAGTGGGGCATAATTCTGGGAACTTTAGGGCGACAAGGAAATCCTAAAATACTGAATCACATTGAGCAACGTTTGGAAGAGAAGGGTATCTTCTTTACAGTTTTCCTCATGTCTGAAATCTCACCCTCTAAAATTTTACTTTTTGGGGATTCTGTTGATGTTTGGGTGCAGATTGCTTGTCCCCGTCTTTCAATTGATTGGGGTGAAGCCTTTACTAAGCCTTTGCTGACACCATTCGAGGCAGAAGTGGCACTTGGCTTTGTGCAGCCTTGGTGGAAGGGAGAAACTGAGCAGGAGGATGCTTGCAGACATATAGTGCAGGGTCAGGTTCAGTCATGTGGTTCTTGTGGAGAAACAAGGTCCAGTGTTGTAACTTGTAATAAGGATTCATGCTGTGCTGGCAGAGGTTCTGTAAATGGATCTGTAAATGTAATAGATATTTCCAGGACCAAAAGTGAGGAAAGTTGTCTGCCAGATGGGATATCAGACAATGCTGTATATCCTATGGATTACTATGCTCGAGATGGAGGATCCTGGAATTCTGCATATATTCAGAAGGGTCCTGCGCAAAGAAGATGCCAAACAGTGCAAGATAATGTGAAAGGTCATTAA___ATGTGCTGTCTTGATTCTCATATCAAATGTACCATGTAGTCTTATCTTTTGGTTGTGAATCCTTTTGTTCAATTGCTTGGGCTTCCTTGTACTACTTTCATTTTAAGAAAAAGGTTAATACGTGTCACACAATCTTAATATATCTTTCAATTTAATTGATTCTTATGTCTAACTACTTTGCAGGTA

Fln Alignment:

Contig2096___AASSISQSGAPKAPRRFVRQQIPDSILNDPALKAAMAVLPPNYNLEIPKCIWRIKQSGAKHVALQFPEGLLMYSLTICDILEAFTDVDECFVLGDVTYGACCVDDYSATALGADFLIHYGHSCLVPIDFTSIPCLYVFVDIQIDVQHLVETIRYNFKPEDRLALAGTIQFSTAIHAAKAALADQYPNINVPQVKPLSPGEVLGCTAPSLPRGTLDTAVFVSDGRFHLEAFMIANPKVQVFRYDPYLKVLVLEKYDHKGMKDTRKKSILQAQRGKQWGIILGTLGRQGNPKILNHIEQRLEEKGIFFTVFLMSEISPSKILLFGDSVDVWVQIACPRLSIDWGEAFTKPLLTPFEAEVALGFVQPWWKGETEQEDAC---RHIVQGQVQSCGSCGETRSSVVTCNKDSCCAGRGSVNGSVNVIDISRTKSEESCLPDGISDNAV--YPMDYYARDGGSWNSAYIQKGPAQRR
A9SCT0______________AAKAITKTSG--APRRYVRQQIPDSILNDPALKAAMAVLPANYNLEIPKTVWRVKQAGAKKVALQFPEGLLLYSLTICDILEEFAGVEDCFVLGDVTYGACCVDDYSAAALGAEFLVHYGHSCLVPVDVSQIPCLYVFVDIQIDVAHLVGAVKHNFEVGTKLALAGTIQFSTAIQVAKTQLVRYFPHILIPQSKPLSPGEVLGCTSPSLPEGTIDVVIFVADGRFHLEAFMIANPNVKAYRYDPYSRVLTHEKYDQKGMREARRKAIEAAQLSNRWGVVLGTLGRQGNPQILKHLEKRLEARGVQFVTLLVSELSPSKLALFNRSIDVWVQIACPRLSIDWGEAFPGPLLTPYEVEVALGYVKPWWVAEGWTEGSWPQNRHMASKQTESAGK-----------------------------VDVVATPSL-----DAANDLEVGPYPMDYYARDGGPWNSVY-QRGPISSR

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
1549	75		25		0.996473
1648	33		66		1.0
1654	88	11			0.923564
1660	88		11		0.923564
1661	88	11			0.923564
1662		11		88	0.923564
1663		88	11		0.923564
1664	11			88	0.923564
1666		88		11	0.923564
1667			11	88	0.923564
1671		11	88		0.923564
1672	11			88	0.923564
1673	11			88	0.923564
1745			87	12	0.992554
1746	87			12	0.992554
1752	57	42			1.0
1762	57		42		1.0
1773	66		33		1.0
1790		33		66	1.0
1791	33		66		1.0
1797		83		16	0.994512
1798	33		66		1.0
1800	66		33		1.0
1828		25	75		1.0
1831		25		75	1.0
1868	66		22	11	0.999999
1869			88	11	0.923564
1873		50		50	1.0
1902			80	20	0.995493
1929	80			20	0.995493
1952		20		80	0.995493
1972	83		16		0.994512
2016	83		16		0.994512
2039		25		75	0.996473
2040	25	75			0.996473
2041		50		50	1.0
2042		75		25	0.996473
2061		66		33	0.997452
2062	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain