SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2090

Length: 1521 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2090

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAL38373.1\| putative RING zinc finger protein [Arabidopsis thaliana] gb\|AAM10083.1\| putative RING zinc finger protein [Arabidopsis thaliana] gb\|AEC09635.1\| RING/U-box domain-containing protein	-	-	3.9937e-43	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNX6

Fln msg: your sequence is shorter than subject: 322 - 346

Fln protein: WMLYPSQPSSTSAQSESRSTHQSKRKFSDDDVNTESSSKPPKIPHNPISSCPICLGNDIHQTQLVALRLCMHQFCAKCIQRWSSLQRKCPLCKREFDGWFYDIQGPGSYREKRLLPLAEAPEPSVNGNGQREMDSQRSLQYARGRILDNQRRTRSLPRRRYGGHSRFVSAAEKRRLEEAGAAEKALTWRARIYRKGLRAIPPRLQNRTNMKQNITDELNERARIERRLEPWIRRELEAILGDQDLTVLVHLVLSLWFSSLRKQEGTRNLMPSSNEDDFMQQLEPFLSDKANAFWHELRCFAESPFTMSAYDSIVEYQRPLK*

Protein Length: 323

Fln nts: TGGATGCTCTATCCCTCACAACCTTCGTCGACCTCCGCGCAATCCGAATCTCGCTCAACGCACCAATCCAAGCGCAAATTCTCCGACGACGACGTCAATACAGAGTCCTCATCCAAACCTCCCAAAATACCCCACAACCCAATATCATCCTGCCCGATATGCCTGGGCAATGACATCCACCAAACCCAACTGGTCGCCCTGAGACTGTGTATGCATCAATTCTGTGCAAAATGTATTCAGAGATGGAGCTCATTGCAGCGCAAATGCCCGCTGTGCAAACGGGAATTTGACGGCTGGTTTTACGACATACAGGGACCCGGAAGTTACAGGGAAAAGCGTCTGTTGCCCTTGGCAGAGGCACCCGAGCCGTCTGTTAACGGAAATGGTCAGAGGGAAATGGATTCTCAGAGATCATTGCAGTATGCGAGAGGCCGGATTTTGGACAATCAGAGGCGCACGAGGTCACTGCCACGGCGACGTTATGGGGGGCATTCCAGATTTGTTTCGGCTGCAGAGAAACGCAGGCTTGAAGAAGCGGGTGCTGCCGAAAAGGCCCTGACATGGCGAGCCAGAATATACAGAAAGGGCCTAAGAGCTATTCCACCTCGTCTTCAAAATAGAACTAATATGAAGCAGAACATCACAGATGAATTGAATGAAAGGGCTAGAATAGAACGCCGATTGGAACCTTGGATTCGTCGGGAACTGGAGGCCATCCTTGGGGACCAAGATCTGACAGTCCTTGTTCACCTTGTGCTTTCTCTTTGGTTCTCCAGTCTCAGGAAACAAGAAGGGACGCGGAATTTGATGCCCTCAAGCAATGAAGATGACTTTATGCAACAGTTGGAGCCATTTTTAAGTGACAAGGCAAATGCTTTCTGGCATGAACTGAGGTGCTTTGCAGAATCTCCGTTCACAATGAGTGCATATGATTCTATAGTAGAATATCAAAGACCTCTTAAGTAA___AAGTGCAGATCGTAGATAGATTATGGCATTCAATGTGCACCTATCATGAGGAGCAAACTATCTGGTCACTTTGGTATGTGCATCTACTGAGAAGTCATGTACAAAAGAACAACCTGGCAAATATTTCTACGGGGATCTGTGGTTTGATCACTTGTTGAGAGTCAAGACAGCTCTTACGTGAACCAGTGCCAGTAATGGTGTTCTGGCATAGTCCCTGATTAGCATAAGCTCAATTCCATAGCTTTGTTGGCATGCTTGAATAATGGTTGTTTTTACTAGTTTGTGGTTATTATTTTTGGAGCCAATTTGGGGCCATCAGTGGAAGACAAATATCAAAGAAAGTTTCATGATTGTCGAGCTTCCATGGATATTATTTGATAAAATCACAGGCTTGTCTGTAATTGATGAATCGTCTGTCATGTATCTATCTAAGCTCTTTTGCTTAGGTCATTGATGAAGCTCTCTTTGTATTAACATGTTTGATGAAAATACACTATTCTGAAATGATTCAAATCCTCTTTACACTACGAATAAGTGCTTCTTCCTAACAACTCT

Fln Alignment:

Contig2090___HQSKRKFSDDDVNTESSSKPPKIPHNPISSCPICLGNDIHQTQLVALRLCMHQFCAKCIQRWSSLQRKCPLCKREFDGWFYDIQGPGSYREKRLLPLAEAPEPSVNGNGQREMDSQRSLQYARGRILDNQRRTRSLPRRRYGGHSRFVSAAEKRRLEEAGAAEKALTWRARIYRKGLRAIPPRLQNRTNMKQNITDELNERARIERRLEPWIRRELEAILGDQDLTVLVHLVLSLWFSSLRKQEGTRNLMPSSNEDDFMQQLEPFLSDKANAFWHELRCFAESPFTMSAYDSIVEYQRPL
B8LNX6______________HQSKRKFSSDDHNTDSPSKLPNIPQDPASSCPICLGNDIHQTQLVVLRLCMHQFCVKCIHTWSALQRKCPLCKREFDGWFYDIQGPGNYREKRLLPLAEAPEPSFNGNGQRETDTQRSLQYARGRILDNQRRTRPLPRRRFFAHSRFVPAAEKRRLEEAGAAEKALRWRASIYRKGLRAIPPRLQNRTNIKQNITGELNEKARIERRLEPWIRRELEAILGDQDPTVLVHLVFSLWLSRLRKQEGKQNLVPSSNEDEFMQQLEPFIGDKANAFWHELRCFAESPFTMSAYDSIAEYQRPL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1158	12		87		0.992554
1223	12			87	0.992554
1224		12	87		0.992554
1225	12	87			0.992554
1415		25		75	0.996473
1487		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain