SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2089

Length: 1912 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2089

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana] gb\|AAC62893.1\| 3-methyl-2-oxobutanoate hydroxy-methyl-transferase [Arabidopsis thaliana] gb\|AAO44086.1\| At2g46110 [Arabidopsis thaliana] dbj\|BAE99826.1\| 3-methyl-2-oxobutanoate hydroxy-methyl-	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	GO:0003864	Molecular Function	0.0	-
Sma3	pantothenate biosynthetic process	GO:0015940	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ketopantoate hydroxymethyltransferase	IPR003700	-	0.0	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46110.1	PANB1, KPHMT1 ketopantoate hydroxymethyltransferase 1 chr2:18954807-18956411 REVERSE LENGTH=347	70%
RefSeq	Arabidopsis thaliana	NP_182135.1	ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002320828.1	ketopantoate hydroxymethyltransferase [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2B1

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 427 - 396

Fln protein: VVIDGRFRGWGEQLFLCDLLLISTTISSADPSTSCMAHICPSSFLLRHGFTNSWQPKGSWITMLKRVSHHFHNNDKFGPSPLPRLLDVHGMSNLPEKVVYGGPKSQSPWKRITLNHLATKYHKGEPITMVTAYDYPSAVHVDNAGIDICLVGDSVGMVVHGHDTTLPVTLDDMLLHCRAVSRGASRSLLVGDLPFGSYEESKEQAVASATRLLKEGGMDAIKLEGGTPSRVIAAKSIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNAASATKVLESALALQDAGCFAIVLECVPSPVAAAITSSLQIPTIGIGAGPNCSGQVLVYHDLLQMTQHPHHAQVTPKFCKAYGNIGIAINEALCKYREEVVSQKFPSAAHTPYRIDQSSVETFISELSKRGLGKAAEAAAAAAENDNKSGEPRISTLPD*

Protein Length: 428

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCCCCAAAGGGATGACCTAGAAAAGCCAATCCACATCAAAGAGCATTTCTGCCCCCTCGCCCCACAAGAGAACAAGCTCCCAAGGAGGCGTGGCGCTGTGCGTGGCTGCAGTGGTTGGAATTTGAGTGAAAGTCTTCAATGTCATGGCTTCCTCAACCAGTCAATGGAATTTCTCCACTTCGACTACGTGTTTAAGTTGTTATTGATGGGAGATTTAGGGGTTGGGGCGAGCAGCTTTTCCTTTGTGATTTACTTCTGATTTCTACGACGATCTCTAGCGCAGACCCGTCTACTAGTTGCATGGCTCATATATGTCCATCGTCATTTCTTCTTCGTCATGGTTTTACTAATTCTTGGCAACCAAAAGGATCATGGATAACGATGTTAAAGAGGGTTTCTCACCATTTTCACAACAATGACAAGTTTGGGCCTTCACCTTTGCCAAGGCTGTTGGATGTGCATGGAATGTCTAATCTTCCAGAAAAGGTTGTCTATGGAGGACCTAAGTCTCAATCTCCCTGGAAAAGGATCACTTTAAACCATCTTGCTACTAAATATCACAAAGGGGAGCCCATAACAATGGTGACTGCCTATGATTATCCATCGGCAGTTCATGTAGACAATGCTGGCATTGATATCTGCTTAGTAGGGGATTCAGTTGGAATGGTGGTGCATGGACATGACACAACCTTACCTGTCACCTTGGATGATATGCTGCTTCATTGTCGTGCTGTATCACGTGGAGCATCTAGATCTCTTCTTGTTGGTGATTTGCCTTTTGGAAGCTATGAAGAAAGCAAGGAGCAGGCAGTTGCAAGTGCAACTCGACTATTGAAGGAGGGGGGCATGGATGCAATAAAACTTGAAGGGGGTACACCATCTAGGGTCATAGCAGCAAAATCTATAGTTGAGGCAGGCATTGCAGTCATTGGACATGTTGGGTTGACTCCTCAGGCGATAAGTGTGCTAGGTGGCTTTAGGCCACAGGGTAGAAATGCTGCCAGTGCCACAAAGGTTCTGGAGAGTGCGTTGGCTTTACAGGATGCAGGTTGTTTTGCTATTGTACTAGAGTGTGTGCCTTCTCCAGTCGCAGCTGCTATTACATCTTCTCTTCAAATTCCTACCATCGGAATTGGAGCAGGGCCTAATTGTAGTGGCCAGGTCTTAGTTTATCATGACTTGCTGCAGATGACGCAACATCCACACCATGCCCAGGTTACACCCAAGTTCTGCAAGGCCTATGGGAACATAGGAATTGCTATCAATGAAGCATTGTGCAAGTACAGAGAAGAGGTGGTTTCCCAGAAGTTTCCATCTGCTGCGCATACTCCTTATCGAATTGACCAATCTAGTGTTGAAACTTTTATTTCTGAACTTAGTAAGAGAGGATTGGGGAAAGCAGCGGAGGCAGCTGCTGCAGCCGCTGAGAATGACAATAAATCTGGAGAACCAAGGATCAGTACACTTCCAGACTAG___ATTAGCATGAATGACCTTATTATTGTGTTTTGTTTGAAAAGAGAGGACTGGGCAAAATAACAGTGATAGCTGATGCAACTGCTTAGAATGATGATAAGGCCGTTCAGCCACTAACCGATATTCTTGAATCTTCTAAAACGAAATCGAAATCCCAGAGAATAAATTACATTTTCGCTGCCAATTTTGCACCTAAGTAGCAGTTTATTCTGCCCCTTTTCAAAATATCTAAATACATTATCAAGCTGCAATAGAGATTACATCCACTTGGAAAATTCCAGATTGAAGCAGCAAGGTTACTGCTTATGTAATAACATGAATTGTTCGGATTTTAACTAGTAATAGCTCCCCCTGAATATTTGCATGTAATTTAATTTGGCAAGTGCACACACCAACTAGCAC

Fln Alignment:

Contig2089___LISTTISSADPSTSCMAHICPSSFLLRHGFTNSWQPKGSWITMLKRVSHHF---HNNDKFGPSPLPRLLDVHGMSNLPEKVVYGGPKSQSPWKRITLNHLATKYHKGEPITMVTAYDYPSAVHVDNAGIDICLVGDSVGMVVHGHDTTLPVTLDDMLLHCRAVSRGASRSLLVGDLPFGSYEESKEQAVASATRLLKEGGMDAIKLEGGTPSRVIAAKSIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNAASATKVLESALALQDAGCFAIVLECVPSPVAAAITSSLQIPTIGIGAGPNCSGQVLVYHDLLQMTQHPHHAQVTPKFCKAYGNIGIAINEALCKYREEVVSQKFPSAAHTPYRIDQSSVETFISELSKRGLGKXXXXXXXXXXNDNKSGEPRISTLPD
A9P2B1______________MIPSTISSQGSSTSFMA---------RH----LWQSKGSWITMLRRGSHCFQIPYHNYKFELSSLPRMLDVRGMSNLPEKSVYGGPKSQSPWKRITLNHLAAKYDKGEPITMVTAYDYPSAVHVDNAGIDICLVGDSVGMVVHGHDTTLPVTMDDMLLHCRAVSRGASRSLLVGDLPFGSYEESKEQAVASATRLLKEGGMDAIKLEGGTPSRVIAARSIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNAASATKVLESALALQDAGCFAIVLECVPSPVAAAVTSSLQIPTIGIGAGPNCSGQVLVYHDLLQMTQHPHHAQVTPKFCKAYGNIGIAVNEALCKYREEVVSQKFPSAAYTPYRIDQSSVETFIAELSKRGLGKAAQAAAAAAENDKKSGEPRISTLPD

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
100	25	75			0.996473
189		75	25		0.996473
193	50		50		1.0
199		75		25	0.996473
221		75		25	0.996473
232	85		14		0.993533
243	85			14	0.993533
259			20	80	0.995493
278		66		33	0.997452
299		33		66	0.997452
311		33		66	0.997452
646	83		16		0.994512
664		14		85	0.993533
745		16		83	0.994512
775	66	33			1.0
883		50	50		1.0
899	50		50		1.0
1013		83	16		0.994512
1044			87	12	0.992554
1046		87	12		0.992554
1047	87			12	0.992554
1048		85		14	0.993533
1049	85		14		0.993533
1050	85	14			0.993533
1055		14		85	0.993533
1157		50		50	1.0
1158	25	75			0.996473
1159		75		25	0.996473
1274			90	10	0.90298
1315	20		80		0.999996
1316		90	10		0.90298
1318	75	8		16	0.99999
1320			18	81	0.999994
1321	81		18		0.999994
1398	14			85	0.993533
1412	75	25			1.0
1413	25	75			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain