SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2088

Length: 3264 nt

UniGene Fasta

>sp_v3.0_unigene2088
TGACACATTAGTTGTAAAAGCGGAAAAGTCGACCTCTGTATCTGCTTCTCCAATGAATCAGGATACAAATTTATCTGAATATGGAAAGAATGATCTAGCGGCAAAGCTAAAGGCAAAGATAGCTCAAAAGCAAACAGATAGCAAAGCAGATAAGAGAAGTGGAAGTCGTTTGTTTTCTGTGATGATGAATGTTGTTAAAGATGATGGAATTGGAATAGATGGGATTGGTTTTGAGGAAAAAGTGCCAGGCAGGGACATTTTTCCTGTGCAGGCTGTAGAAGTCAGCAGATTGATTAGTATGTTGAAGCCAGATAAATCAGAAGATATGATTGTATCAGCGTGCCAGAAGCTTATTGCGATATTTCAAGATTTCCCAGACCAAAAAATGCTATTTGTCAGCCAGCATGGGCTAGTGCCTTTGATGGAAATGCTCGAAGTAGCTAACAATCGTGTTATAGTTTCTGTGCTCCAGATTGTCAATCAGCTTATCAAAGACAATGCACCATTTCAGGAAAATCCTGACCATATCTTGGTCTTATTCCAGTTGTAATGAACTTTGCAGCATCTGACCACTCAAGAGAAATCCGTATGCAGGCTGCATATTTTGTGCAGCAATTGTGCCAGACAAGTTCGCTGACTTTACAGATGTTCATTGCATGCCGTGGGTTGCCCATATTGGTTGGTTTCCTGGAACCAGACTATGCAAAATACAGGGAAATGGTACATTTGGCAATTGATGGTATGTGGCAGGTCTTCAACCTGCGAAGTCCTACTCCCCGGAATGATTTCTGTCGAATATCTGCTAAGAATGGAATCCTGCTCAGGCTTGTTAACACTCTTCACAGTTTGAATGAAGCAACTCGACTTGCTTCAGCAGGTGGTGGAGGCGCACCTAATTCTGCAACTGATGGTGTTATGCAACAGGCACGGTCAGGTTCTCTTGAGCCATTTCGTCCTTTCTCTAGTCTCCGTGATACATCTCATCCACGCTCTGGTCAGCTTGATCCTACAAAGGTTAGATCTGGACTTGTTGATGCACACCGTTCATCAACAGGGGCTCCAGAATCTTCACAAACATTAACAGCACAATCACAAAGGCTGGATATAAGTCAATCTGATTCGAGATATAGTCCTGGGCAGTTTGAGAAATCATCCACAGCTACAGGAATTTCAGACCCATCAATGGTTAGTAATGCATCAGAGCTTACAGAAAACATTTTGTCCTCCACAGGACAAGAATCACTGTTGTTGCCATCTAAGGATCGTGAACAATTTGAGTTTGGACAGCTGGAGACTTCTCACCTGGAGGCAGACTATTTAAAACAACAACGAGGTGCTCCATCTACCCAAAGAGGTGTCACGGATCAGTCATGGAAACAAACAAATCCTCCCCGTGCTTCAAATGGACTTGTTGGCACTGCCCAGAGCTCATCTTCTCAACAAGAGACAGTGCAACCACTCTTAAGTCTACTGGAAAAAGAACCACCTTCTAGGCATACATCAGGCCAGCTTGAATATATTCGTCATCTTTCTTCTGGTCTAGAGAGACATGAAAGTATTCTGCCTCTCCTCCATCATTCATCGGTGGAAAGAAAGGCAAATGGCGAACTGGATATTCTGATGTCTGCATTTGCAGATATTTCAGATAATGGAGCTGTTGAATTAACTTCAAAGTTGTCACCAAAATCATATAAGAAGAATGGACCACTGGTGAGCGGAGGTGGGGCAACTGCTGGTGAGGGAGTTGCTTCCACATCTGGGTATGCTTCACAATCAGCATCTGGAGTGCTTTCTGGGTCTGGAGTTCTGAATGCAAGACCTGGAAGTGCAACATCATCAGGTTTACTATCACAGATGGTACCAACTCTAAATGCTGAAGTTGCAAGAGAGTACTTGGAGAAAGTTGCAGATCTACTACTTGAGTTTACTCGAGCAGACACAACAGTTAAGTCACACATGTGCAGCTTGAGCTTACTAATTCGCTTGTTCCAGATGCTTAACAAGCTTGAGTCACCTATTCTTCTAAAGATATTGAAATGCATCAATCAGCTTTCAACTGATCCAAATTGTTTAGAGTATCTACAGCGCGCAGATGCCATCAAGCATCTTATCCCTATCCTTGAGCGGCAGGATGGACCTCTTGTTTCTGAAATACATAATGAAGTGCTTAATGCATTATACAATCTTTGTAAAATAAACAAGAGAAGGCAGGAGCAAGCAGCAGAAAATGGCATAATTCCACATTTGATGCGTTTCATTATTACGGATTCTCCCTTGAAGCAGACTGCCTTGCCTTTGCTCTGTGATATGGCTCATGCTTCTCGATATACTAGGGAGCAACTAAGGGTGCACAATGGGCTGGATGTTTATTTGAGCTTACTGGATGATGTGGGCTGGTCAGTTACTGCTTTGGACTCTCTTGCAGTTTGCCTAGCACATGATAATGATCATCGAAAAGTTGAGCAGGCATTGCTTAAGAAGGAAGCTGTGCAGAAGTTGGTCACTTTCTTTCAGAGTTGCAGTGAACAATCTTTTGTCCATATATTGGAGCCATTCCTGAAGATAATCACAAAATCTGCTCGAATAAATACAACATTGGCTGTTAATGGACTAACACCATTACTCGTGGCACGACTCGATCATCAGGATGCCATTGCTCGCCTCAACTTACTTAAACTCATCAAGGCTGTGTATGAGCATCATCCTAGGCCAAAACAACTAATAGTTGAGAATGATTTGCCCCTCAAACTTCAAAGTCTTATCGAAGAACGAAGGGATGGTGAGCGCTCTGGAGGTCAAGTGCTTGTGAAACAAATGGCAACTGCCTTGCTAAAAGCTCTGCACATCAACACTGTTCTCTGAGGATATTATTTCTGCTGCTTATCTTATTTCTCAATTGGGAATAAGATGTAGTCTTGGCATATGTAAATTGTATGATTTCATGTGTTTTATGTTTGTGAAAATTTTTGTAGGTGAGAATTAAAAATGCGGCGCATCATTGCTTTTGTTGTTGATAGCCCCTGTAAAAAGAAACATCTTTTGTGAATATTTAGAAGGTGTTAATATTGTTTTTCCTTCTGCTCTTAATGTATCAACATTGCTGAATAATTCGACGATCAGGTTCCTATGTGATGTAATTTTTTCATGTAACATAGATGGTTTTCATGAGCATTTCATTCAAAGGAATTCCTTGTCAATTCAAGACATTGCTTTTGTTTGAGTGCTTAGTTAAAACTACGCACTGATAAAAATATGCAATCGTAG

Ace file of the UniGene sp_v3.0_unigene2088

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAP3K epsilon protein kinase [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Sma3	Putative MAP3K epsilon protein kinase	-	-	9.17e-09	-

Source	Gene names
Sma3	24K23.24; At3g07980; At3g13530; F17A17.32; GSVIVT00030218001; H0112G12.4; MAP3K epsilon; MAP3Ke1; OSJNBa0015K02.14; Os04g0660500; OsI_17770; OsJ_16493; PHYPADRAFT_127611; PHYPADRAFT_132892; PHYPADRAFT_85178; POPTRDRAFT_558707; POPTRDRAFT_650913; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	plasma membrane organization	GO:0007009	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13530.1	MAPKKK7, MAP3KE1 mitogen-activated protein kinase kinase kinase 7 chr3:4411934-4419320 REVERSE LENGTH=1368	64%
RefSeq	Arabidopsis thaliana	NP_187962.1	mitogen-activated protein kinase kinase kinase 7 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002306391.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HF39

Fln msg: Separated hits, possible frame ERROR between 517 and 529, your sequence is shorter than subject: 954 - 1405

Fln protein: DTLVVKAEKSTSVSASPMNQDTNLSEYGKNDLAAKLKAKIAQKQTDSKADKRSGSRLFSVMMNVVKDDGIGIDGIGFEEKVPGRDIFPVQAVEVSRLISMLKPDKSEDMIVSACQKLIAIFQDFPDQKMLFVSQHGLVPLMEMLEVANNRVIVSVLQIVNQLIKDNAPFQExxxxxLGLIPVVMNFAASDHSREIRMQAAYFVQQLCQTSSLTLQMFIACRGLPILVGFLEPDYAKYREMVHLAIDGMWQVFNLRSPTPRNDFCRISAKNGILLRLVNTLHSLNEATRLASAGGGGAPNSATDGVMQQARSGSLEPFRPFSSLRDTSHPRSGQLDPTKVRSGLVDAHRSSTGAPESSQTLTAQSQRLDISQSDSRYSPGQFEKSSTATGISDPSMVSNASELTENILSSTGQESLLLPSKDREQFEFGQLETSHLEADYLKQQRGAPSTQRGVTDQSWKQTNPPRASNGLVGTAQSSSSQQETVQPLLSLLEKEPPSRHTSGQLEYIRHLSSGLERHESILPLLHHSSVERKANGELDILMSAFADISDNGAVELTSKLSPKSYKKNGPLVSGGGATAGEGVASTSGYASQSASGVLSGSGVLNARPGSATSSGLLSQMVPTLNAEVAREYLEKVADLLLEFTRADTTVKSHMCSLSLLIRLFQMLNKLESPILLKILKCINQLSTDPNCLEYLQRADAIKHLIPILERQDGPLVSEIHNEVLNALYNLCKINKRRQEQAAENGIIPHLMRFIITDSPLKQTALPLLCDMAHASRYTREQLRVHNGLDVYLSLLDDVGWSVTALDSLAVCLAHDNDHRKVEQALLKKEAVQKLVTFFQSCSEQSFVHILEPFLKIITKSARINTTLAVNGLTPLLVARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPLKLQSLIEERRDGERSGGQVLVKQMATALLKALHINTVL*

Protein Length: 955

Fln nts: TGACACATTAGTTGTAAAAGCGGAAAAGTCGACCTCTGTATCTGCTTCTCCAATGAATCAGGATACAAATTTATCTGAATATGGAAAGAATGATCTAGCGGCAAAGCTAAAGGCAAAGATAGCTCAAAAGCAAACAGATAGCAAAGCAGATAAGAGAAGTGGAAGTCGTTTGTTTTCTGTGATGATGAATGTTGTTAAAGATGATGGAATTGGAATAGATGGGATTGGTTTTGAGGAAAAAGTGCCAGGCAGGGACATTTTTCCTGTGCAGGCTGTAGAAGTCAGCAGATTGATTAGTATGTTGAAGCCAGATAAATCAGAAGATATGATTGTATCAGCGTGCCAGAAGCTTATTGCGATATTTCAAGATTTCCCAGACCAAAAAATGCTATTTGTCAGCCAGCATGGGCTAGTGCCTTTGATGGAAATGCTCGAAGTAGCTAACAATCGTGTTATAGTTTCTGTGCTCCAGATTGTCAATCAGCTTATCAAAGACAATGCACCATTTCAGGAAAAxxxxxxxxxxxxTCTTGGTCTTATTCCAGTTGTAATGAACTTTGCAGCATCTGACCACTCAAGAGAAATCCGTATGCAGGCTGCATATTTTGTGCAGCAATTGTGCCAGACAAGTTCGCTGACTTTACAGATGTTCATTGCATGCCGTGGGTTGCCCATATTGGTTGGTTTCCTGGAACCAGACTATGCAAAATACAGGGAAATGGTACATTTGGCAATTGATGGTATGTGGCAGGTCTTCAACCTGCGAAGTCCTACTCCCCGGAATGATTTCTGTCGAATATCTGCTAAGAATGGAATCCTGCTCAGGCTTGTTAACACTCTTCACAGTTTGAATGAAGCAACTCGACTTGCTTCAGCAGGTGGTGGAGGCGCACCTAATTCTGCAACTGATGGTGTTATGCAACAGGCACGGTCAGGTTCTCTTGAGCCATTTCGTCCTTTCTCTAGTCTCCGTGATACATCTCATCCACGCTCTGGTCAGCTTGATCCTACAAAGGTTAGATCTGGACTTGTTGATGCACACCGTTCATCAACAGGGGCTCCAGAATCTTCACAAACATTAACAGCACAATCACAAAGGCTGGATATAAGTCAATCTGATTCGAGATATAGTCCTGGGCAGTTTGAGAAATCATCCACAGCTACAGGAATTTCAGACCCATCAATGGTTAGTAATGCATCAGAGCTTACAGAAAACATTTTGTCCTCCACAGGACAAGAATCACTGTTGTTGCCATCTAAGGATCGTGAACAATTTGAGTTTGGACAGCTGGAGACTTCTCACCTGGAGGCAGACTATTTAAAACAACAACGAGGTGCTCCATCTACCCAAAGAGGTGTCACGGATCAGTCATGGAAACAAACAAATCCTCCCCGTGCTTCAAATGGACTTGTTGGCACTGCCCAGAGCTCATCTTCTCAACAAGAGACAGTGCAACCACTCTTAAGTCTACTGGAAAAAGAACCACCTTCTAGGCATACATCAGGCCAGCTTGAATATATTCGTCATCTTTCTTCTGGTCTAGAGAGACATGAAAGTATTCTGCCTCTCCTCCATCATTCATCGGTGGAAAGAAAGGCAAATGGCGAACTGGATATTCTGATGTCTGCATTTGCAGATATTTCAGATAATGGAGCTGTTGAATTAACTTCAAAGTTGTCACCAAAATCATATAAGAAGAATGGACCACTGGTGAGCGGAGGTGGGGCAACTGCTGGTGAGGGAGTTGCTTCCACATCTGGGTATGCTTCACAATCAGCATCTGGAGTGCTTTCTGGGTCTGGAGTTCTGAATGCAAGACCTGGAAGTGCAACATCATCAGGTTTACTATCACAGATGGTACCAACTCTAAATGCTGAAGTTGCAAGAGAGTACTTGGAGAAAGTTGCAGATCTACTACTTGAGTTTACTCGAGCAGACACAACAGTTAAGTCACACATGTGCAGCTTGAGCTTACTAATTCGCTTGTTCCAGATGCTTAACAAGCTTGAGTCACCTATTCTTCTAAAGATATTGAAATGCATCAATCAGCTTTCAACTGATCCAAATTGTTTAGAGTATCTACAGCGCGCAGATGCCATCAAGCATCTTATCCCTATCCTTGAGCGGCAGGATGGACCTCTTGTTTCTGAAATACATAATGAAGTGCTTAATGCATTATACAATCTTTGTAAAATAAACAAGAGAAGGCAGGAGCAAGCAGCAGAAAATGGCATAATTCCACATTTGATGCGTTTCATTATTACGGATTCTCCCTTGAAGCAGACTGCCTTGCCTTTGCTCTGTGATATGGCTCATGCTTCTCGATATACTAGGGAGCAACTAAGGGTGCACAATGGGCTGGATGTTTATTTGAGCTTACTGGATGATGTGGGCTGGTCAGTTACTGCTTTGGACTCTCTTGCAGTTTGCCTAGCACATGATAATGATCATCGAAAAGTTGAGCAGGCATTGCTTAAGAAGGAAGCTGTGCAGAAGTTGGTCACTTTCTTTCAGAGTTGCAGTGAACAATCTTTTGTCCATATATTGGAGCCATTCCTGAAGATAATCACAAAATCTGCTCGAATAAATACAACATTGGCTGTTAATGGACTAACACCATTACTCGTGGCACGACTCGATCATCAGGATGCCATTGCTCGCCTCAACTTACTTAAACTCATCAAGGCTGTGTATGAGCATCATCCTAGGCCAAAACAACTAATAGTTGAGAATGATTTGCCCCTCAAACTTCAAAGTCTTATCGAAGAACGAAGGGATGGTGAGCGCTCTGGAGGTCAAGTGCTTGTGAAACAAATGGCAACTGCCTTGCTAAAAGCTCTGCACATCAACACTGTTCTCTGAGGATATTATTTCTGCTGCTTATCTTATTTCTCAATTGGGAATAAGATGTAGTCTTGGCATATGTAAATTGTATGATTTCATGTGTTTTATGTTTGTGAAAATTTTTGTAGGTGAGAATTAAAAATGCGGCGCATCATTGCTTTTGTTGTTGATAGCCCCTGTAAAAAGAAACATCTTTTGTGAATATTTAGAAGGTGTTAATATTGTTTTTCCTTCTGCTCTTAATGTATCAACATTGCTGAATAATTCGACGATCAGGTTCCTATGTGATGTAATTTTTTCATGTAACATAGATGGTTTTCATGAGCATTTCATTCAAAGGAATTCCTTGTCAATTCAAGACATTGCTTTTGTTTGAGTGCTTAGTTAAAACTACGCACTGATAAAAATATGCAATCGTAG

Fln Alignment:

Contig2088___AEKSTSVSASPMNQ-DTNLSEYGKNDXXXXXXXXXXXXXTDSKADKRSGSRLFSVMMNVVKXXXXXXXXXXFEEKVPGRDIFPVQAVEVSRLISMLKPDKSEDMIVSACQKLIAIFQDFPDQKMLFVSQHGLVPLMEMLEVANNRVIVSVLQIVNQLIKDNAPFQENxxxxLGLIPVVMNFAASDHSREIRMQAAYFVXXXXXXXXXXXXMFIACRGLPILVGFLEPDYAKYREMVHLAIDGMWQVFNLRSPTPRNDFCRISAKNGILLRLVNTLHSLNEATRLXXXXXXXXXXXXTDGVMQQARSGSLEPFRPFS-----SLRDTSHPRSGQLDPTKVRSGLVDAHRSSTGAPESSQTLTAQSQRLDISQSDSRYSPGQFEKSSTATGISDPSMVSNASELTENILSSTGQESLLLPSKDREQFEFGQLETSHLEADYLKQQRGAPSTQRGVTDQSWKQTNPPRASNGLVGTAQSSSSQQETVQXXXXXXXXXXXXRHTSGQLEYIRHLSSGLERHESILPLLHHSSVERKANGELDILMSAFADIS----DNGAVELTSKLSPKSYKKNGPLVSGGGATAGEGVASTSGYXXXXXXXXXXXXXXXNARPGSATSSGLLSQMVPTLNAEVAREYLEKVADLLLEFTRADTTVKSHMCSLSLLIRLFQMLNKLESPILLKILKCINQLSTDPNCLEYLQRADAIKHLIPILERQDGPLVSEIHNEVLNALYNLCKINKRRQEQAAENGIIPHLMRFIITDSPLKQTALPLLCDMAHASRYTREQLRVHNGLDVYLSLLDDVGWSVTALDSLAVCLAHDNDHRKVEQALLKKEAVQKLVTFFQSCSEQSFVHILEPFLKIITKSARINTTLAVNGLTPLLVARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPLKLQSLIEERRDGERSGGQVLVKQMATALLKALHINTVL
F6HF39______________AEASTSASSSHVVQGNAFINDAGKNDLATKLRATIAQKQMENEIGQTNGD-LFSLMLDVLKEDVMDIDGLVFDDKMPGENLFPLQAVEFSRLVGSLRPQEPEDVIVSACLKLISIFHQRPEQKGVFVTQHGLLPLMELLEVSRTRVICSVLQIVNQIIKDNTDFQENxxxxVGLIPVVMSFAVPDHPREVRMEAAYFSQQLCQSSSLTLQMFIACGGIPVLVGFLEADYVRYREMVHLAIDGMWQVFKLQRSTPRNDFCRIAAKNGILPRLINTLYSLNEAARLASIAGGSGFTI--EGLAPRPRSGSLDPSSPIFIQGEISLTGIDHP-----DLLKVRHGLID-HSLSTATQEPSRVSASHPQRSDANQPDSRYFSLDTDRPAMEASVASKLQDLAFSEKVANMQTKESSGTIL---KERENLDRWKIDP----------QRVPNSANRTSVDRPSKLVEG--VSNGFPSTI---GTQQEQVRPLLSLLDKEPPSRHFSGQLEYVRHLS-GLERHESILPLLHATN-EKKTNGELDFLMAEFAEVSGRGRENGNLDSAPRISNKTVNKKIPLASN------EGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNADVAKEYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRIEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGPLVFQIHYEVLYALFNLCKINKRRQEQAAENGIIPHLMHFIMSDSPLKQHALPLLCDMAHASRNSREQLRAHDGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAIQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLKLIKSVYEHHPRPKQLIVENDLPQKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1394	33	66			0.997452
1396	33	66			0.997452
1397		33	33	33	0.997753
2200	66			33	0.997452
3192	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain