SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2056

Length: 3082 nt

UniGene Fasta

>sp_v3.0_unigene2056
CATAGCTTTACTTCCCACGGTTCCATGGAAGGCAAAGAAAGCAGGTCCTCCGTTGCCATTGGCGATGGAGGAGGGGGCGTTTTGCTCACCAAACCAGCCCCCTCCCGCCCCTCATTAGCCCTCCCTCCACGCCCCGAGGGAGGTATAAGCATCACCAGCATAAGCCCCGGTCCCATGACTCTGGCATCTTCCTTCTTCTCCGACCACGACCCCGATTCCGAATCCAAGTCCTTCTCGCAGCTCCTGGCCGGCGCAATGGCCTCTCCACCCCCTCGCTAAGGATATTAAGCCCACTATCAACACTACCACGAGCTCCTCACAGGCCAACCCTCCTCATCCTCCCCCTCCCAAGGGGTCTTCCTGTAGCGCCAAGTTCAAGTGCATGCCTCCCTCCAGCATTCCAATTCCGCGCTCCCCTTTTCTGAGTTTGCCCCATGGCTTGAGCCCCAGCACGCTTCTGGATTCCCCTATGCTCTTAAACTCTCAGGTTGAGCCCTCACCAACAACGGGTAACTTCCCACTTGCTCCTATTAAAGAAGAGAGTTCAGATCAGGAAAGTGGATTAAATTATGTATTTAAACCATTTCCAAAGGGACCCTTTGAAATTTCTCACCAGCAAGTCCTTGCACAGATTCAGGCTCAAGCTGCTCAAGCTCATGCCCAGGCCCAGTCCCAGTCCCAGTCCCAGGCTCAAGCCAAGGTCCAACCCCAGGCTCAAGCCAAGGTCCAACCCCAGGCTCAATTGCAAGATCATCCTGCAGCAGGTCATGCCCCTGAATCATCCTTCACTTCATCATCATCACTTCAGCCAACATCGTCTTGTACGATGCCATCTACTGCTGGTGCTGGTGGTGCTAGTGCCAGTGCAATTCCACCTCCAAAGGACATAGATAGTCCATCAGAAGCAAAGCAAGCTATTGTGATATCAAGTAAGGAATCAAACAAAAGAGCTCCAGCTTCTGTTCCACCTGTTTCTGTTGTAGGGAAACCATCTGCTGATGGATATAATTGGCGCAAATATGGGCAGAAGCAGGTGAAGGGCAGTGAATATCCCCGTAGCTATTATAAATGCACCCATCCAAATTGTCCAGTCAAGAAGAAGGTTGAGCGCTCTCATGATGGACAAGTGACTGAAATTGTGTACAAAGGAGAGCACAATCATCCCAAACCTCACCCTACAAGGCGCATGTCTATTGTTTCTCATCAGTATCTCTCAGAGGGTGGACAAGAGGTACCAAATTCAGTGGGTGGAGATATGAATTCAAGAACTAATGGATCTAATTCAGGATTTCCAGGCGATCCAAATGTCAGAAATGGAAGGAATGTGGATGGTTCGGATCCTTCAACATCTATGAAGCTACATGACACTGGGAATAGGAGTCCTGGGCAATCATCTGGTTCAAGTGACGATCGACATGGGGCAGAAGAGGGATGTGATGATGACCCAGATTCCAAACGAAGTAAGAAGGACACAAAGTCAAAGGAAGTACTCGTAGTTGCACCTCTCAGGACTATTCGTGAACCCCGAGTGGTTGTCCAAACAAGAAGTGATGTGGACATTCTGGATGATGGTTATCGCTGGCGCAAATATGGACAAAAGGTTGTTAAGGGAAATCCTCACCCTCGGAGTTATTACAAGTGTACCAATCTTGGATGTCCTGTGCGTAAACATGTTGAAAGAGCATCAACTGATGCCAAAGCTGTTATTACGACCTACGAGGGAAAGCACAATCATGATGTGCCAGCTGCAAGACATAGCAGCCATGATGTAGCAGGAGCTGTTTCACAGGTTCAGACCGTAAATCATAGTGTTGCACCAAATGTATTGATGACCCAACAGATGGGGAACAAACAGTCTGCCTTCAGCAGGATTTCAGAGAGCACTCCTGAAGGGAAGAATGATGCCAATAAAGAAAGTGGAGAACCTGTGCTAGCCATTTGTGACAAGAGCCATAGTGAAAATATGAAGACTACTGCCCCTGTTTCAACAAGTGTTCCATTATTGACATACACAAATACAGGAGGGTCTTTTGGTGGTGGTGTTAATGTACCTCTTTCAGAAACAGTGCAAGTGTCAGGGACTATTAGACCAAAGGAAGAACAATAACCCTTTTTAAGAATTTGTGGGTTTGAGCCAAAGTATGGGCACAAATGATATGGTTCCAATGTGTATTTGGTGGTGTACTTGAAAGTTTCCACATGGAGTTAAATTGTATTACCATTACTTTGGGTTCACCAAATGATGTCCGTTTATGACTGCAGAGACTATAAACATGCTGCATGGCCCAGTTCTAGGATTTCCGCCAAGAATTCTACAGCCATGAAGTGCTCAGGCTTTAGCGTTCGGACAAATAAAGTCAATGCCATGTCGAAATGAAAGTGCTACTTTTGTTTTCTTTGTGGGGTTAGTAGTTGTATTATTGCTTCCTGGATCATATATCCTCTTGTTGGCAGAAGGCATTCAAGTTTCTAATGGCAGAAGGTGGAATTCTGTTTCTTATTTATTTATGGCTCTAGTGTGATCCCTTCTGTCCTGACAGCATATTACACTTTTCTGTAAATTCTTTTGTCTTCTTGTAGAGCTTTTTGAGGCTTCTTATTCATTTTGACAGCATCTTCAGCGATGTGCTATAGTTTTTATTCTGTGGTATTATTGCTGGGCATAGACTTCAGTATTAGGTATGTTTCGACACCCAAGGTTGGAGACACTCAAAATAGCATAGTCTCTGACGCTTCTTGTAAAATTCATGATAAGATTTGCCTCAATGATTTTAGTTCCATCTTCCTTGAAGTTATGTTGGTCTGAAAGATCAGACGTTTCTTGTATTCATGTCAACTGGGGTCAGAAATTTAAGGACATGTATTTATTTGAGACATCTTGATAATGTTTTTAACCAGGCACTTCTTTTGAAATTTTGAAACGTTCAAAATTTCACTTTTTACTGAAAAACTCATAAATGCAGGATCTTATCTTTGCAACATTAACTTGTTTGTTGTTTACAACAGCTTATAAGTCACAACTCTTCTTCTTGTGCTGATCTTTGCTTTGGCATTTGGAATGGAAATATATGGTCTCGAAATG

Ace file of the UniGene sp_v3.0_unigene2056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY transcription factor PmWRKY115 (Fragment) n=3 Tax=Pinus monticola RepID=E6Y3E7_PINMO	-	-	0.0	89%
FL-Next	sp=Probable WRKY transcription factor 33; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	WRKY transcription factor	-	-	6.17e-12	-

Source	Gene names
Sma3	At1g13960; At2g03340; At2g04880; At2g30250; At2g37260; At2g38470; At3g01080; At4g26440; At4g26640; At5g07100; DcLasD; F16A14.18; F1O13.1; F28I8.34; F7A19.5; GSVIVT00003337001; GSVIVT00004133001; GSVIVT00012503001; GSVIVT00021021001; GSVIVT00023080001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	regulation of defense response	GO:0031347	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38470.1	WRKY33, ATWRKY33 WRKY DNA-binding protein 33 chr2:16108476-16110539 FORWARD LENGTH=519	45%
RefSeq	Arabidopsis thaliana	NP_181381.2	putative WRKY transcription factor 33 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002298853.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8S8P5

Fln msg: your sequence is longer than subject: 575 - 519

Fln protein: MPPSSIPIPRSPFLSLPHGLSPSTLLDSPMLLNSQVEPSPTTGNFPLAPIKEESSDQESGLNYVFKPFPKGPFEISHQQVLAQIQAQAAQAHAQAQSQSQSQAQAKVQPQAQAKVQPQAQLQDHPAAGHAPESSFTSSSSLQPTSSCTMPSTAGAGGASASAIPPPKDIDSPSEAKQAIVISSKESNKRAPASVPPVSVVGKPSADGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHDGQVTEIVYKGEHNHPKPHPTRRMSIVSHQYLSEGGQEVPNSVGGDMNSRTNGSNSGFPGDPNVRNGRNVDGSDPSTSMKLHDTGNRSPGQSSGSSDDRHGAEEGCDDDPDSKRSKKDTKSKEVLVVAPLRTIREPRVVVQTRSDVDILDDGYRWRKYGQKVVKGNPHPRSYYKCTNLGCPVRKHVERASTDAKAVITTYEGKHNHDVPAARHSSHDVAGAVSQVQTVNHSVAPNVLMTQQMGNKQSAFSRISESTPEGKNDANKESGEPVLAICDKSHSENMKTTAPVSTSVPLLTYTNTGGSFGGGVNVPLSETVQVSGTIRPKEEQ*

Protein Length: 576

Fln nts: CATAGCTTTACTTCCCACGGTTCCATGGAAGGCAAAGAAAGCAGGTCCTCCGTTGCCATTGGCGATGGAGGAGGGGGCGTTTTGCTCACCAAACCAGCCCCCTCCCGCCCCTCATTAGCCCTCCCTCCACGCCCCGAGGGAGGTATAAGCATCACCAGCATAAGCCCCGGTCCCATGACTCTGGCATCTTCCTTCTTCTCCGACCACGACCCCGATTCCGAATCCAAGTCCTTCTCGCAGCTCCTGGCCGGCGCAATGGCCTCTCCACCCCCTCGCTAAGGATATTAAGCCCACTATCAACACTACCACGAGCTCCTCACAGGCCAACCCTCCTCATCCTCCCCCTCCCAAGGGGTCTTCCTGTAGCGCCAAGTTCAAGTGC_-_ATGCCTCCCTCCAGCATTCCAATTCCGCGCTCCCCTTTTCTGAGTTTGCCCCATGGCTTGAGCCCCAGCACGCTTCTGGATTCCCCTATGCTCTTAAACTCTCAGGTTGAGCCCTCACCAACAACGGGTAACTTCCCACTTGCTCCTATTAAAGAAGAGAGTTCAGATCAGGAAAGTGGATTAAATTATGTATTTAAACCATTTCCAAAGGGACCCTTTGAAATTTCTCACCAGCAAGTCCTTGCACAGATTCAGGCTCAAGCTGCTCAAGCTCATGCCCAGGCCCAGTCCCAGTCCCAGTCCCAGGCTCAAGCCAAGGTCCAACCCCAGGCTCAAGCCAAGGTCCAACCCCAGGCTCAATTGCAAGATCATCCTGCAGCAGGTCATGCCCCTGAATCATCCTTCACTTCATCATCATCACTTCAGCCAACATCGTCTTGTACGATGCCATCTACTGCTGGTGCTGGTGGTGCTAGTGCCAGTGCAATTCCACCTCCAAAGGACATAGATAGTCCATCAGAAGCAAAGCAAGCTATTGTGATATCAAGTAAGGAATCAAACAAAAGAGCTCCAGCTTCTGTTCCACCTGTTTCTGTTGTAGGGAAACCATCTGCTGATGGATATAATTGGCGCAAATATGGGCAGAAGCAGGTGAAGGGCAGTGAATATCCCCGTAGCTATTATAAATGCACCCATCCAAATTGTCCAGTCAAGAAGAAGGTTGAGCGCTCTCATGATGGACAAGTGACTGAAATTGTGTACAAAGGAGAGCACAATCATCCCAAACCTCACCCTACAAGGCGCATGTCTATTGTTTCTCATCAGTATCTCTCAGAGGGTGGACAAGAGGTACCAAATTCAGTGGGTGGAGATATGAATTCAAGAACTAATGGATCTAATTCAGGATTTCCAGGCGATCCAAATGTCAGAAATGGAAGGAATGTGGATGGTTCGGATCCTTCAACATCTATGAAGCTACATGACACTGGGAATAGGAGTCCTGGGCAATCATCTGGTTCAAGTGACGATCGACATGGGGCAGAAGAGGGATGTGATGATGACCCAGATTCCAAACGAAGTAAGAAGGACACAAAGTCAAAGGAAGTACTCGTAGTTGCACCTCTCAGGACTATTCGTGAACCCCGAGTGGTTGTCCAAACAAGAAGTGATGTGGACATTCTGGATGATGGTTATCGCTGGCGCAAATATGGACAAAAGGTTGTTAAGGGAAATCCTCACCCTCGGAGTTATTACAAGTGTACCAATCTTGGATGTCCTGTGCGTAAACATGTTGAAAGAGCATCAACTGATGCCAAAGCTGTTATTACGACCTACGAGGGAAAGCACAATCATGATGTGCCAGCTGCAAGACATAGCAGCCATGATGTAGCAGGAGCTGTTTCACAGGTTCAGACCGTAAATCATAGTGTTGCACCAAATGTATTGATGACCCAACAGATGGGGAACAAACAGTCTGCCTTCAGCAGGATTTCAGAGAGCACTCCTGAAGGGAAGAATGATGCCAATAAAGAAAGTGGAGAACCTGTGCTAGCCATTTGTGACAAGAGCCATAGTGAAAATATGAAGACTACTGCCCCTGTTTCAACAAGTGTTCCATTATTGACATACACAAATACAGGAGGGTCTTTTGGTGGTGGTGTTAATGTACCTCTTTCAGAAACAGTGCAAGTGTCAGGGACTATTAGACCAAAGGAAGAACAATAA___CCCTTTTTAAGAATTTGTGGGTTTGAGCCAAAGTATGGGCACAAATGATATGGTTCCAATGTGTATTTGGTGGTGTACTTGAAAGTTTCCACATGGAGTTAAATTGTATTACCATTACTTTGGGTTCACCAAATGATGTCCGTTTATGACTGCAGAGACTATAAACATGCTGCATGGCCCAGTTCTAGGATTTCCGCCAAGAATTCTACAGCCATGAAGTGCTCAGGCTTTAGCGTTCGGACAAATAAAGTCAATGCCATGTCGAAATGAAAGTGCTACTTTTGTTTTCTTTGTGGGGTTAGTAGTTGTATTATTGCTTCCTGGATCATATATCCTCTTGTTGGCAGAAGGCATTCAAGTTTCTAATGGCAGAAGGTGGAATTCTGTTTCTTATTTATTTATGGCTCTAGTGTGATCCCTTCTGTCCTGACAGCATATTACACTTTTCTGTAAATTCTTTTGTCTTCTTGTAGAGCTTTTTGAGGCTTCTTATTCATTTTGACAGCATCTTCAGCGATGTGCTATAGTTTTTATTCTGTGGTATTATTGCTGGGCATAGACTTCAGTATTAGGTATGTTTCGACACCCAAGGTTGGAGACACTCAAAATAGCATAGTCTCTGACGCTTCTTGTAAAATTCATGATAAGATTTGCCTCAATGATTTTAGTTCCATCTTCCTTGAAGTTATGTTGGTCTGAAAGATCAGACGTTTCTTGTATTCATGTCAACTGGGGTCAGAAATTTAAGGACATGTATTTATTTGAGACATCTTGATAATGTTTTTAACCAGGCACTTCTTTTGAAATTTTGAAACGTTCAAAATTTCACTTTTTACTGAAAAACTCATAAATGCAGGATCTTATCTTTGCAACATTAACTTGTTTGTTGTTTACAACAGCTTATAAGTCACAACTCTTCTTCTTGTGCTGATCTTTGCTTTGGCATTTGGAATGGAAATATATGGTCTCGAAATG

Fln Alignment:

Contig2056___DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHDGQVTEIVYKGEHNHPKPHPTRRMSIVSHQYLS-----------EGGQEVPNSVGGDMNSRTNG------SNSGFPGDPNVRNGRNVDGSDPSTSMKLHDTGNRSPGQSSGSSDDRHGAEEGCXXXXXXXXXXXXXXXXEVLVVAPLRTIREPRVVVQTRSDVDILDDGYRWRKYGQKVVKGNPHPRSYYKCTNLGCPVRKHVERASTDAKAVITTYEGKHNHDVPAARHSSHDVAGAVSQVQTVNHSVAPNVLMTQQMGNKQSAFSRISESTPEGKNDANKESGEPVLAICDKSHSENMKT
Q8S8P5______________DGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGDDEFEQGSSIVSRDEE------DCGSEPEAKRWKGDNETNGGNGGGS-----------------------KTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYATNRAPQDSSSV--PIRPAAI----AGHSNYTTSSQAPYTLQMLHNNNTNTGPFGYAMNNNNNNSNLQT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
2212		12		87	0.999964
2869	12			87	0.999964
2870			13	86	0.999973
2888	10		90		0.90298
2889		12		87	0.992554
2890	12			87	0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
666	688	CCCAGT CCCAGT CCCAGT CCCAG	23
791	802	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain