SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2022

Length: 2499 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2022
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTCGAAATAGGGTGTCAGATGTATTTATTGGAGCCTTGTTTTGTATACTTGGGAGTTTCACAGCAAAAGCTGCGGCTACTCGCGTTAATGGGTTCTAGTTCTAGTTCAAACTTAAGAGTAATCGTTTTGAACATGTGAAAGGCTTTTTGGAACTTGATCTGATTTTATTACAATCTCTGAAATTTGGGTAGTTTTCAGAACGACGGGGAGGTCGGATTCGCAGAATTCTCATTGAACCAATGTAGAACGTAGTTGAATAGCCGATCCCAATTGCTGCCCAGGGTGTAGTAAGCAGAAGATAACCTACCATGTTACCGCAGAGGTTAAAGACCAGATCAGTGGCTGCCCAAAAGCTGTTTGCTCCTGTTGGGTTCCTGGTGATGGCTGCAACCTTGATTTATTTCTACTATCAATCGGAATTACACCTATTCTTGCCGGTAGATGAGAACCCAAATGGGTCCCAAAGAACTCTAGTGAAAAGGAGACCCCAAGCTAGAACAGACGGGTTGAGTGAAAAATTCAGTTTTGTTATTAAAGTTCTTGCTTATGATAGGCTAGAGTCTGTGTCCAGATGCCTAGAGTCACTGGCCAGGGCTGATTATGTCAAGGACAGAGTGAAACTTCATGTTTTTATTGATCATTTTCAAATTGAAGAACAGGGGAGTAGTGCTGGTACTGTAGATATTGACAGCAAGTTGAATAATGCCCACCAGATTTTAGAGTATGTTGATAAATTTGATTGGAAACACGGCGAAAAGGTAATCCATTATAGAACCCAAAATGCTGGGTTGCAGGCTCAGTGGCTGGAGGCTTGGTGGCCATCTTCAGAGGATGAGTTTGCCTTCATTGTAGAGGATGATATGGTGTTGTCTCCATTGTTTTACAGGTATTTGAGGGCTCTGATAGCAAATTATTATTATAATCCAGCGAATTCCAACCCTTCCATCTATGGGGTCTCTCTTCAGCGCCCGCGATTTGTTGGTGGTAAGCATGGGAACAATTTAAAGGTGGATAATGATACTCGGCTATTTTTATATCAGATGGTTGGCACTTGGGGCCAGCTTCTCTTCCCAAAGCCTTGGAAAGAGTTCCGCCTTTGGTATGATATGCATAAAAGCAAGGGGATTAAGCCCATTTTAGAAGGTATGATCACAACAGGTTGGTACAGGAGAAAGAGGGAGAAGATCTGGACACCTTGGTTCATTAAATTTATTCATGCACATGGCTACTACAATATCTACACTAACTTTTTGCTTGACAGGGCATTGAGCATCTCTTATAGAGATGCCGGTGTAAATTATGGAAAGAATATTGGGCCTGATTCTCATTTAATGAATTCAAGTGATATATTGGACTTTGACCTATGGGAGATGAAACCCTTGAAGCTTATGGACTGGTATGACTTCTGCTTTCAGAAAGTGCTTCCTTATAGATATGTAAAAAGGCTTGATCAACTAGAGCCAGTTCTATCATCGGTTCATAAGCAGAAAACAGTAGTTCTTGTCAATTTATTTGGAGTACCAGATGCAATTGTAAGAAACCTTTTGTGTCAGTTCCAAAAGCTAGGCATTCGAAGTTATATTCTTCTGGGAGGAAAATCAACTTTGCTAGATGACTTGTCTAGGAGGGGGCATGCAGTCATAGATGCAAATCAACTGATTGACGATATGGCTACAGTGGGTATAATGGATCATCGAGTGTCTAGAGCCAAGGAGATGAGGGAGGCTCTAGCTACTACATACATAATGAATAAGTCACTTCAGTTAGGATACAGCATCTGGCTAACAAGAGCAAATATATTTCCCATAGAAGACCTATTTTCTATATCAAGTGACATAAAAAATGATGTGCTAACTTTGGAGACAAAGCAACATCTGAGGACAGAGGTTTTGTACTTCAGGAGTTCAGTATCAACAATAAAGTTATGGAATAAAGTTTTTGCAGGATTGATGTCAAAAGCACAGTCTTCTGTTGTTGATGATCTTTCCAAAGTCGAGCATATTTTAGCTTTTCAACTAAGGTCATCCATTATAGGAGTCGGTTTCAAGATGAAGTCAATTGACGCAAGTATAATGATGCAAGTTGGAAGCAGTGCAATTAATCCTGGTAATGCAACATCTACCCAGCCAATAGTAAAGATTCTATTTTGGCCTTCAAATAAAGATGCCGATTATGTAAAGAAACATTTGAAGGACCGAAACTTGTGGATGGTGGATGATGAGCTTGCTTGCACGTCTATAGTTTGCCATCGGTTGTAAATCAAACTAAATTTTGGTTCAGAAACATAGTTGTTTAGACATAGCATTCATGAGAATGAACTGGATGATGTACATTTTGCTACAGCCATGCAAGTAAAGAAGCTGTTGTTTGATTGTACAGTCATAGTCCTGAATTTTGGCCGTTTCATTTCATATTAAATATGTGAAAGTTCAGTCACTTTTGTCTGGCAATATTCTTCTAAC

Ace file of the UniGene sp_v3.0_unigene2022 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	46%

Source	Gene names
Sma3	At5g12260; GSVIVT00022805001; MtrDRAFT_AC183502g15v2; OSJNBa0004B13.7; Os01g0283000; OsI_01427; OsJ_01332; P0581F09.17; PHYPADRAFT_2298; POPTRDRAFT_767882; POPTRDRAFT_847208; RCOM_0702360;

Source	GOs	Term	Type	e value	Identity
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	0.0	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12260.1	" BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes	46%
RefSeq	Arabidopsis thaliana	NP_196787.1	uncharacterized protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002314015.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: G7L963

Fln msg:

Fln protein: MLPQRLKTRSVAAQKLFAPVGFLVMAATLIYFYYQSELHLFLPVDENPNGSQRTLVKRRPQARTDGLSEKFSFVIKVLAYDRLESVSRCLESLARADYVKDRVKLHVFIDHFQIEEQGSSAGTVDIDSKLNNAHQILEYVDKFDWKHGEKVIHYRTQNAGLQAQWLEAWWPSSEDEFAFIVEDDMVLSPLFYRYLRALIANYYYNPANSNPSIYGVSLQRPRFVGGKHGNNLKVDNDTRLFLYQMVGTWGQLLFPKPWKEFRLWYDMHKSKGIKPILEGMITTGWYRRKREKIWTPWFIKFIHAHGYYNIYTNFLLDRALSISYRDAGVNYGKNIGPDSHLMNSSDILDFDLWEMKPLKLMDWYDFCFQKVLPYRYVKRLDQLEPVLSSVHKQKTVVLVNLFGVPDAIVRNLLCQFQKLGIRSYILLGGKSTLLDDLSRRGHAVIDANQLIDDMATVGIMDHRVSRAKEMREALATTYIMNKSLQLGYSIWLTRANIFPIEDLFSISSDIKNDVLTLETKQHLRTEVLYFRSSVSTIKLWNKVFAGLMSKAQSSVVDDLSKVEHILAFQLRSSIIGVGFKMKSIDASIMMQVGSSAINPGNATSTQPIVKILFWPSNKDADYVKKHLKDRNLWMVDDELACTSIVCHRL*

Protein Length: 651

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTCGAAATAGGGTGTCAGATGTATTTATTGGAGCCTTGTTTTGTATACTTGGGAGTTTCACAGCAAAAGCTGCGGCTACTCGCGTTAATGGGTTCTAGTTCTAGTTCAAACTTAAGAGTAATCGTTTTGAACATGTGAAAGGCTTTTTGGAACTTGATCTGATTTTATTACAATCTCTGAAATTTGGGTAGTTTTCAGAACGACGGGGAGGTCGGATTCGCAGAATTCTCATTGAACCAATGTAGAACGTAGTTGAATAGCCGATCCCAATTGCTGCCCAGGGTGTAGTAAGCAGAAGATAACCTACC_-_ATGTTACCGCAGAGGTTAAAGACCAGATCAGTGGCTGCCCAAAAGCTGTTTGCTCCTGTTGGGTTCCTGGTGATGGCTGCAACCTTGATTTATTTCTACTATCAATCGGAATTACACCTATTCTTGCCGGTAGATGAGAACCCAAATGGGTCCCAAAGAACTCTAGTGAAAAGGAGACCCCAAGCTAGAACAGACGGGTTGAGTGAAAAATTCAGTTTTGTTATTAAAGTTCTTGCTTATGATAGGCTAGAGTCTGTGTCCAGATGCCTAGAGTCACTGGCCAGGGCTGATTATGTCAAGGACAGAGTGAAACTTCATGTTTTTATTGATCATTTTCAAATTGAAGAACAGGGGAGTAGTGCTGGTACTGTAGATATTGACAGCAAGTTGAATAATGCCCACCAGATTTTAGAGTATGTTGATAAATTTGATTGGAAACACGGCGAAAAGGTAATCCATTATAGAACCCAAAATGCTGGGTTGCAGGCTCAGTGGCTGGAGGCTTGGTGGCCATCTTCAGAGGATGAGTTTGCCTTCATTGTAGAGGATGATATGGTGTTGTCTCCATTGTTTTACAGGTATTTGAGGGCTCTGATAGCAAATTATTATTATAATCCAGCGAATTCCAACCCTTCCATCTATGGGGTCTCTCTTCAGCGCCCGCGATTTGTTGGTGGTAAGCATGGGAACAATTTAAAGGTGGATAATGATACTCGGCTATTTTTATATCAGATGGTTGGCACTTGGGGCCAGCTTCTCTTCCCAAAGCCTTGGAAAGAGTTCCGCCTTTGGTATGATATGCATAAAAGCAAGGGGATTAAGCCCATTTTAGAAGGTATGATCACAACAGGTTGGTACAGGAGAAAGAGGGAGAAGATCTGGACACCTTGGTTCATTAAATTTATTCATGCACATGGCTACTACAATATCTACACTAACTTTTTGCTTGACAGGGCATTGAGCATCTCTTATAGAGATGCCGGTGTAAATTATGGAAAGAATATTGGGCCTGATTCTCATTTAATGAATTCAAGTGATATATTGGACTTTGACCTATGGGAGATGAAACCCTTGAAGCTTATGGACTGGTATGACTTCTGCTTTCAGAAAGTGCTTCCTTATAGATATGTAAAAAGGCTTGATCAACTAGAGCCAGTTCTATCATCGGTTCATAAGCAGAAAACAGTAGTTCTTGTCAATTTATTTGGAGTACCAGATGCAATTGTAAGAAACCTTTTGTGTCAGTTCCAAAAGCTAGGCATTCGAAGTTATATTCTTCTGGGAGGAAAATCAACTTTGCTAGATGACTTGTCTAGGAGGGGGCATGCAGTCATAGATGCAAATCAACTGATTGACGATATGGCTACAGTGGGTATAATGGATCATCGAGTGTCTAGAGCCAAGGAGATGAGGGAGGCTCTAGCTACTACATACATAATGAATAAGTCACTTCAGTTAGGATACAGCATCTGGCTAACAAGAGCAAATATATTTCCCATAGAAGACCTATTTTCTATATCAAGTGACATAAAAAATGATGTGCTAACTTTGGAGACAAAGCAACATCTGAGGACAGAGGTTTTGTACTTCAGGAGTTCAGTATCAACAATAAAGTTATGGAATAAAGTTTTTGCAGGATTGATGTCAAAAGCACAGTCTTCTGTTGTTGATGATCTTTCCAAAGTCGAGCATATTTTAGCTTTTCAACTAAGGTCATCCATTATAGGAGTCGGTTTCAAGATGAAGTCAATTGACGCAAGTATAATGATGCAAGTTGGAAGCAGTGCAATTAATCCTGGTAATGCAACATCTACCCAGCCAATAGTAAAGATTCTATTTTGGCCTTCAAATAAAGATGCCGATTATGTAAAGAAACATTTGAAGGACCGAAACTTGTGGATGGTGGATGATGAGCTTGCTTGCACGTCTATAGTTTGCCATCGGTTGTAA___ATCAAACTAAATTTTGGTTCAGAAACATAGTTGTTTAGACATAGCATTCATGAGAATGAACTGGATGATGTACATTTTGCTACAGCCATGCAAGTAAAGAAGCTGTTGTTTGATTGTACAGTCATAGTCCTGAATTTTGGCCGTTTCATTTCATATTAAATATGTGAAAGTTCAGTCACTTTTGTCTGGCAATATTCTTCTAAC

Fln Alignment:

Contig2022___VAAQKLFAPVGFLVMAATLIYFYYQSELHLFLPVDENPNGSQRTLVKRRPQARTDGLSEKFSFVIKVLAYDRLESVSRCLESLARADYVKDRVKLHVFIDHFQIEEQGSSAGTVDIDSKLNNAHQILEYVDKFDWKHGEKVIHYRTQNAGLQAQWLEAWWPSSEDEFAFIVEDDMVLSPLFYRYLRALXXXXXXXXXXXXXXXYGVSLQRPRFVGGKHGNNLKVDNDTRLFLYQMVGTWGQLLFPKPWKEFRLWYDMHKSKGIKPILEGMITTGWYRRKREKIWTPWFIKFIHAHGYYNIYTNFLLDRALSISYRDAGVNYGKNIGPDSHLMNSSDILDFDLWEMKPLKLMDWYDFCFQKVLPYRYVKRLDQLEPVLSSVHKQKTVVLVNLFGVPDAIVRNLLCQFQKLGIRSYILLGGKSTLLDDLSRRGHAVIDANQLIDDMATVGIMDHRVSRAKEMREALATTYIMNKSLQLGYSIWLTRANIFPIEDLFSISSDIKNDVLTLETKQHLRTEVLYFRSSVSTIKLWNKVF-------AGLMSKAQSSVVDDLSKVEHILAFQLRSSIIGVGFKMKSID-ASIMMQVGSSAINPGNATSTQPIVKILFWPSNKDADYVKKHLKDRNLWMVDDELACTSIVCHR
G7L963______________VGPKKHFLPIIFITLIAFIFYTFHNSSLPSSI-TESNPNFTVKSPIQINPNST---ISPNFTFLIKVLAFNRLDSVSRCLRSLAAADYLGDRVHLHVYIDHF------APLNNSDVDLKLIESHRILDFVDVFEWKYGEKVVHYRTGNVGLQAQWLEAWWPGSDDEFAFVVEDDLEVSSLYYEYVKALIVNFYYNGSNYSPSIFGATLQRARFVPGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDKNKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSHGYYNIYANFLHERALSVSHRDAGVNYGKTAGPDSQLLEERS-LDFNILEMQPLSSLKWFDFCFREVLPGRFVRNLEELGALLHSMQKQDSVFLVNLLGVSDAVARNLLCHFERLNIRNYILMAPPSDSLFDLARRGHPVINVDQFVSSIGT-NKLSSQGSSFETIKGIVAKAYVIKKCIENEYNTWVLDGSLLLTSDVLLESRNPNDDFCVAN-----KLELFYAKSSPSSEKIWTNGFVSKIVAMADSLGRKDSSNQGSLSFV-YIVTKLLEQN----GASIRRVDGTSFGLKIGSGGVSKSSLEDK----KLVYWSTEMELDSIQKRLEELNLWSIDNELSCTAVVCHK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
740	16		83		0.994512
841		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain