SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2007

Length: 3104 nt

UniGene Fasta

>sp_v3.0_unigene2007
CAACGGTCATCTTGTCTGGCTTTTTCTACATCCAGCGCTGTCCACTCTAAATCTTTATACCAGATGCAAGATTTAGTACTGCTGGCTTCACTGGGTTCTTATTTAGCGAACGACACTAGATAAGGGTTCGGCTTGTGGTCAAAAAGAGCTCTAAGAACACTGGTGTTTAATGCACAGGCATTGATAGCATTGCAAGGTTGGGGGATCGAGTTTTGTTGAAAAGATAACAGAGATTTACAGATCGAAAATGAAGGCATTTGCAAAGCAACCCAAATCCCCTGCCAGTGGACATAAGAGTCCTTACAGTCATAAGGAAAATCAAGGGGAGGTGATTGCTAGTCCCTATGATAAGAAACAGAGGATCGGGCGTGATATATTTGGGACTAAGGTAATGGCTGCTTCCCCAAAGATAAGGGCTCGCCAAGCCTTCTCTGAAGTGATTGCCGGTCAAGAACTGTCGGATCTTGCTGACAGTGGGAACCCCAATGCGCAAACAGATGTTTCAGAAGTTTTTACTAAAGATGGTGTTGAAGCCCTGCTCAATATGAAGATTAAGGGAAAAACTAAATTTGATTACAAGGCCAAGAGTGAGCAAATGACAGAATATATCAAGAAACTCCGAGCCTGCATTCGCTGGCTTCGGGAACTAGAAGAATCCTGTAATCTAGAGAAGGAGCAATTACAAAATCAGATGTTGAGTCAAACCAATGAACACAAGCAGACAGAGGAAGCTTTCAAAATCCGGGAGCAAGAGTTACAGATGACTATTCTTGACCTCAAGAATGCATTATGTTCTGCACAAGACAGACTTTCGAAAGCCGAAGCTGAAAAAGAGGTTCTAATTGGATCTCAGCAAAAAGAGATAGAAGCACGGCAAGCAGCTGAAAAAATGAGTAGTCACCTGTCTGAAGAGCTTGATAAAGCCCGGAGGGAGGCGTCAAGTGCAAATGAACAGGTGGCATCTCTTCAGGATATCAATAAGCGATTGCAACAGTACAATGGCAGTTTACAGCAATACAATAGCAAGCTTCAAAGTGATGCTGCATCTAATGCAGAGACTATTTCTCGTATTCAGAAAGAAAAAACAACTATAATGGAAACTTTAAGTAGTTTGAGAGGTCATTCAGCAGCTATTCAGGAACAGCTGGTTAATGCTAGAGCCACCCAACAGGAAACTATAAAGCAAAAAAAAACACTTATGGAAGAGATTGACCGTCTTCGTGCTGATCTTCAACGAGCTACAGATGATAGAGATCAACAGGCTGCACAAGTGCAGAATTTGACATCCGAGGTTGCAAAATACAGGGAATGCACTGGCAAGTCCGCTGCAGAGCTTGAACAACTTGCTACCAAAACAACGGTTTTAGAGGAAAGTTTTTCCTCCCAGAATGAACATATAAGAAACTTATGCATAAAGCTGGAAATTGCAAATCAAAAGCTAGAGATAGCAGAATCCTCTGCCTTACAATACAAAGCCATAGATGGCGAACAAAAGCAAAAAATTGAAGATTTGCGAAAACGCCTTGAAGAAGCTGAACTTAAAAATTTTGAAGGAGAGCTTCTAAGAAGAAAGTTGCATAACACTATCTTGGAACTTAAAGGAAATATTAGGGTCTTTTGTAGAGTAAGACCAATATTGCCAGAAGATGATTGCACAAGTGTAGAGTCACCGATTCTGCAATATCCTACATCGACTGAGCTTGTTGGCCGTTGCATTGACCTAATACAGGGTCCAGGACAAAAACATTCATTTAGCTTTGATAAAGTATTTGGACCAGAAGCTGAACAGGAGGAGGTTCTTTGTAGAGATATCACAACTCGTTCAAAGTGCTTTAGATGGATACAAGGTGTGCATTTTTGCATATGGCCAAACTGGGTCAGGGAAAACTCATACAATGATCGGTGGCTTAGATGTGGCTAGTAAGAAAGGAATTATACCGAGATCTTTGGAGCAGATTTTCAAATCTAGCCAGACTCTTGCCTCACAAGGATGGACCTTTAAAATGCAGGCATCAATGTTGGAGATTTATAATGAAACTATTCGAGATCTTTTGGTGACCAATAAGGGCTATAATATGGATGGTACACGAGTTGAGAATGGTATTGCTGCTAAGCAATATACTATTAAGCATGACCAAAATGGAAATACTACTGTGTCAGACCTTACCTTGGTTGATGTTGCCAGTTGGAATGAGGTTTCTTCTCTATTGCATCGGGCATCTCAGAGCAGGTCAGTGGGAAGGACAGCAATGAATGAGCAATCGTCTCGAAGCCATTGTGTCTTCACGTTGCGCATCTCTGGAATAAATGAGAGCACAGAGCAACATGTCCACGGAGTTCTGAACCTTATCGACTTGGCAGGAAGTGAACGTCTTTCCCGTAGTGGCTCGACCGGAGAACGCCTTAAAGAAACTCAGGCTATCAATAAAAGTTTGGCTTGTTTGGGAGATGTGATTTTAGCTATTGCTAACAGAGAACAACATATTCCATTTAGAAACTCAAAGCTGACATATCTTCTTCAGACATGCCTTGGTGGGGATTCAAAAACACTTATGTTCGTCAATGTATCCCCTGATCCCAAGTCCCTGAATGAATCACTGTGTTCATTGCGATTTGCTGCAAAAGTGAATGCATGTGATATTGGAGTAGCAAGGCGTCAACCACCGACACGGGTTGCAGATTCGAGTTAAAGTTTAATATCTAACCGCAATGTAGTACCTCAAACCTTGGTGGAAGTTTCCTAACGACTCACCTTTCAACCTTTGTGATATGTTCTGTTATGACAGTGGAGGCTTCCACTGTCTATGACTCTGTATGTGTATAGAAGAAAACTTGTTGAATATCAAATTGTATAGTGGGGTTGGGTTCATTATTTACATGCAATTGTTAAATATTGTTACGAGTAGTCAGAGGAATTATTCATTCATATTCAACAAACGGTAAAGCTTTGGTGATCAATACAAGTTGAATATCTTGGTAGTCTGTGGTTGCCTTCTATGAGGGTACTTTAATGCAGCATAACATTAAATTTGCTTACAGAAGGAACCAGGCCCGTTTTCAATATGTGCAGTACTCGCTCTTTTAAGCTGCAATACATGATTGGC

Ace file of the UniGene sp_v3.0_unigene2007

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin 3 [Arabidopsis thaliana] sp\|P46875.1\|ATK3_ARATH RecName: Full=Kinesin-3; AltName: Full=Kinesin-like protein C dbj\|BAA04674.1\| heavy chain polypeptide of kinesin-like protein [Arabidopsis thaliana] gb\|AAO24588.1\| At5g54670 [Arabidopsis thaliana] db	-	-	0.0	68%
FL-Next	sp=Kinesin-3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Sma3	Kinesin heavy chain, putative	-	-	2.504e-15	-

Source	Gene names
Sma3	AT4g05190; ATK1; ATK2; ATK3; ATK4; At1g63640; At1g72250; At1g73860; At2g47500; At3g45850; At4g05190; At4g21270; At4g27180; At5g27000; At5g54670; At5g65930; B1317D11.110; B21F5.3; CHLREDRAFT_102475; CHLREDRAFT_105722; CHLREDRAFT_119255; CHLREDRAFT_120667;

Source	GOs	Term	Type	Identity
Sma3	nuclear chromosome, telomeric region	GO:0000784	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	minus-end kinesin complex	GO:0005872	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	spindle microtubule	GO:0005876	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	minus-end-directed microtubule motor activity	GO:0008569	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	telomere maintenance	GO:0000723	Biological Process	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	anastral spindle assembly involved in male meiosis	GO:0009971	Biological Process	-
Sma3	spindle assembly	GO:0051225	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Telomere end binding protein	IPR011564	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54670.1	ATK3, KATC kinesin 3 chr5:22209912-22213843 FORWARD LENGTH=754	68%
RefSeq	Arabidopsis thaliana	NP_568811.1	kinesin 3 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002319271.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P46875

Fln msg: Separated hits, possible frame ERROR between 1798 and 1800, your sequence is longer than subject: 815 - 754

Fln protein: MKAFAKQPKSPASGHKSPYSHKENQGEVIASPYDKKQRIGRDIFGTKVMAASPKIRARQAFSEVIAGQELSDLADSGNPNAQTDVSEVFTKDGVEALLNMKIKGKTKFDYKAKSEQMTEYIKKLRACIRWLRELEESCNLEKEQLQNQMLSQTNEHKQTEEAFKIREQELQMTILDLKNALCSAQDRLSKAEAEKEVLIGSQQKEIEARQAAEKMSSHLSEELDKARREASSANEQVASLQDINKRLQQYNGSLQQYNSKLQSDAASNAETISRIQKEKTTIMETLSSLRGHSAAIQEQLVNARATQQETIKQKKTLMEEIDRLRADLQRATDDRDQQAAQVQNLTSEVAKYRECTGKSAAELEQLATKTTVLEESFSSQNEHIRNLCIKLEIANQKLEIAESSALQYKAIDGEQKQKIEDLRKRLEEAELKNFEGELLRRKLHNTILELKGNIRVFCRVRPILPEDDCTSVESPILQYPTSTELVGRCIDLIQGPGQKHSFSFDKVFGPEAEQEExxFVEISQLVQSALDGYKVCIFAYGQTGSGKTHTMIGGLDVASKKGIIPRSLEQIFKSSQTLASQGWTFKMQASMLEIYNETIRDLLVTNKGYNMDGTRVENGIAAKQYTIKHDQNGNTTVSDLTLVDVASWNEVSSLLHRASQSRSVGRTAMNEQSSRSHCVFTLRISGINESTEQHVHGVLNLIDLAGSERLSRSGSTGERLKETQAINKSLACLGDVILAIANREQHIPFRNSKLTYLLQTCLGGDSKTLMFVNVSPDPKSLNESLCSLRFAAKVNACDIGVARRQPPTRVADSS*

Protein Length: 816

Fln nts: CAACGGTCATCTTGTCTGGCTTTTTCTACATCCAGCGCTGTCCACTCTAAATCTTTATACCAGATGCAAGATTTAGTACTGCTGGCTTCACTGGGTTCTTATTTAGCGAACGACACTAGATAAGGGTTCGGCTTGTGGTCAAAAAGAGCTCTAAGAACACTGGTGTTTAATGCACAGGCATTGATAGCATTGCAAGGTTGGGGGATCGAGTTTTGTTGAAAAGATAACAGAGATTTACAGATCGAAA_-_ATGAAGGCATTTGCAAAGCAACCCAAATCCCCTGCCAGTGGACATAAGAGTCCTTACAGTCATAAGGAAAATCAAGGGGAGGTGATTGCTAGTCCCTATGATAAGAAACAGAGGATCGGGCGTGATATATTTGGGACTAAGGTAATGGCTGCTTCCCCAAAGATAAGGGCTCGCCAAGCCTTCTCTGAAGTGATTGCCGGTCAAGAACTGTCGGATCTTGCTGACAGTGGGAACCCCAATGCGCAAACAGATGTTTCAGAAGTTTTTACTAAAGATGGTGTTGAAGCCCTGCTCAATATGAAGATTAAGGGAAAAACTAAATTTGATTACAAGGCCAAGAGTGAGCAAATGACAGAATATATCAAGAAACTCCGAGCCTGCATTCGCTGGCTTCGGGAACTAGAAGAATCCTGTAATCTAGAGAAGGAGCAATTACAAAATCAGATGTTGAGTCAAACCAATGAACACAAGCAGACAGAGGAAGCTTTCAAAATCCGGGAGCAAGAGTTACAGATGACTATTCTTGACCTCAAGAATGCATTATGTTCTGCACAAGACAGACTTTCGAAAGCCGAAGCTGAAAAAGAGGTTCTAATTGGATCTCAGCAAAAAGAGATAGAAGCACGGCAAGCAGCTGAAAAAATGAGTAGTCACCTGTCTGAAGAGCTTGATAAAGCCCGGAGGGAGGCGTCAAGTGCAAATGAACAGGTGGCATCTCTTCAGGATATCAATAAGCGATTGCAACAGTACAATGGCAGTTTACAGCAATACAATAGCAAGCTTCAAAGTGATGCTGCATCTAATGCAGAGACTATTTCTCGTATTCAGAAAGAAAAAACAACTATAATGGAAACTTTAAGTAGTTTGAGAGGTCATTCAGCAGCTATTCAGGAACAGCTGGTTAATGCTAGAGCCACCCAACAGGAAACTATAAAGCAAAAAAAAACACTTATGGAAGAGATTGACCGTCTTCGTGCTGATCTTCAACGAGCTACAGATGATAGAGATCAACAGGCTGCACAAGTGCAGAATTTGACATCCGAGGTTGCAAAATACAGGGAATGCACTGGCAAGTCCGCTGCAGAGCTTGAACAACTTGCTACCAAAACAACGGTTTTAGAGGAAAGTTTTTCCTCCCAGAATGAACATATAAGAAACTTATGCATAAAGCTGGAAATTGCAAATCAAAAGCTAGAGATAGCAGAATCCTCTGCCTTACAATACAAAGCCATAGATGGCGAACAAAAGCAAAAAATTGAAGATTTGCGAAAACGCCTTGAAGAAGCTGAACTTAAAAATTTTGAAGGAGAGCTTCTAAGAAGAAAGTTGCATAACACTATCTTGGAACTTAAAGGAAATATTAGGGTCTTTTGTAGAGTAAGACCAATATTGCCAGAAGATGATTGCACAAGTGTAGAGTCACCGATTCTGCAATATCCTACATCGACTGAGCTTGTTGGCCGTTGCATTGACCTAATACAGGGTCCAGGACAAAAACATTCATTTAGCTTTGATAAAGTATTTGGACCAGAAGCTGAACAGGAGGAGGTxxxCTTTGTAGAGATATCACAACTCGTTCAAAGTGCTTTAGATGGATACAAGGTGTGCATTTTTGCATATGGCCAAACTGGGTCAGGGAAAACTCATACAATGATCGGTGGCTTAGATGTGGCTAGTAAGAAAGGAATTATACCGAGATCTTTGGAGCAGATTTTCAAATCTAGCCAGACTCTTGCCTCACAAGGATGGACCTTTAAAATGCAGGCATCAATGTTGGAGATTTATAATGAAACTATTCGAGATCTTTTGGTGACCAATAAGGGCTATAATATGGATGGTACACGAGTTGAGAATGGTATTGCTGCTAAGCAATATACTATTAAGCATGACCAAAATGGAAATACTACTGTGTCAGACCTTACCTTGGTTGATGTTGCCAGTTGGAATGAGGTTTCTTCTCTATTGCATCGGGCATCTCAGAGCAGGTCAGTGGGAAGGACAGCAATGAATGAGCAATCGTCTCGAAGCCATTGTGTCTTCACGTTGCGCATCTCTGGAATAAATGAGAGCACAGAGCAACATGTCCACGGAGTTCTGAACCTTATCGACTTGGCAGGAAGTGAACGTCTTTCCCGTAGTGGCTCGACCGGAGAACGCCTTAAAGAAACTCAGGCTATCAATAAAAGTTTGGCTTGTTTGGGAGATGTGATTTTAGCTATTGCTAACAGAGAACAACATATTCCATTTAGAAACTCAAAGCTGACATATCTTCTTCAGACATGCCTTGGTGGGGATTCAAAAACACTTATGTTCGTCAATGTATCCCCTGATCCCAAGTCCCTGAATGAATCACTGTGTTCATTGCGATTTGCTGCAAAAGTGAATGCATGTGATATTGGAGTAGCAAGGCGTCAACCACCGACACGGGTTGCAGATTCGAGTTAA___AGTTTAATATCTAACCGCAATGTAGTACCTCAAACCTTGGTGGAAGTTTCCTAACGACTCACCTTTCAACCTTTGTGATATGTTCTGTTATGACAGTGGAGGCTTCCACTGTCTATGACTCTGTATGTGTATAGAAGAAAACTTGTTGAATATCAAATTGTATAGTGGGGTTGGGTTCATTATTTACATGCAATTGTTAAATATTGTTACGAGTAGTCAGAGGAATTATTCATTCATATTCAACAAACGGTAAAGCTTTGGTGATCAATACAAGTTGAATATCTTGGTAGTCTGTGGTTGCCTTCTATGAGGGTACTTTAATGCAGCATAACATTAAATTTGCTTACAGAAGGAACCAGGCCCGTTTTCAATATGTGCAGTACTCGCTCTTTTAAGCTGCAATACATGATTGGC

Fln Alignment:

Contig2007___RARQAFSEVIAGQELSDLADSGNPNAQTDVSEVFTKDGVEALLNMKIKGKTKFDYKAKSEQMTEYIKKLRACIRWLRELEESCNLEKEQLQNQMLSQTNEHKQTEEAFKIREQELQMTILDLKNALCSAQDRLSKAEAEKEVLIGSQQKEIEARQAAEKMSSHLSEELDKARREASSANEQVASLQDINKRLQQYNGSLQQYNSKLQSDAASNAETISRIQKEKTTIMETLSSLRGHSAAIQEQLVNARATQQETIKQKKTLMEEIDRLRADLQRATDDRDQQAAQVQNLTSEVAKYRECTGKSAAELEQLATKTTVLEESFSSQNEHIRNLCIKLEIANQKLEIAESSALQYKAIDGEQKQKIEDLRKRLEEAELKNFEGELLRRKLHNTILELKGNIRVFCRVRPILPEDDCTSVESPILQYPTSTELVGRCIDLIQGPGQKHSFSFDKVFGPEAEQEEVxFVEISQLVQSALDGYKVCIFAYGQTGSGKTHTMIGGLDVASKKGIIPRSLEQIFKSSQTLASQGWTFKMQASMLEIYNETIRDLLVTNKGYNMDGTRVENGIAAKQYTIKHDQNGNTTVSDLTLVDVASWNEVSSLLHRASQSRSVGRTAMNEQSSRSHCVFTLRISGINESTEQHVHGVLNLIDLAGSERLSRSGSTGERLKETQAINKSLACLGDVILAIANREQHIPFRNSKLTYLLQTCLGGDSKTLMFVNVSPDPKSLNESLCSLRFAAKVNACDIGVARRQPPTRVADSS*SL
P46875______________RIRSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKSKFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNKEEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKAQGDLQTANQRIQSVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHETIKRGEKERTAIIENIGNLKGQFSALQEQLAASKASQEDIMKQKGELVNEIASLKVELQQVKDDRDRHLVEVKTLQTEATKYND-----------FKDAITELETTCSSQSTQIRQLQDRLVNSERRLQVSDLSTFEKMNEYEDQKQSIIDLKSRVEEAELKLVEGEKLRKKLHNTILELKGNIRVFCRVRPLLPGEN-NGDEGKTISYPTSLEALGRGIDLMQN-AQKHAFTFDKVFAPTASQEDVxFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGNVEEKGLIPRCLEQIFETRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNK----EAVRTDSGVSPQKHAIKHDASGNTHVAELTILDVKSSREVSFLLDHAARNRSVGKTQMNEQSSRSHFVFTLRISGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPRRQTNIKPLENRLSL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1348	20			80	0.995493
1350		80		20	0.995493
1351		80	20		0.995493
1385	16	83			0.994512
1441	80		20		0.995493
1484	20		80		0.995493
1490	20	80			0.995493
1671		75		25	0.996473
2268	14		85		0.993533
2606	10			90	0.90298
2714	83	16			0.994512
2715	83			16	0.994512
2718		16		83	0.994512
2793	14		85		0.993533
2794		14	85		0.993533
2796			85	14	0.993533
2797			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain