SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2006

Length: 2580 nt

UniGene Fasta

>sp_v3.0_unigene2006
ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCTTCAACATTTAGTATAAGATGCTAAAAAATGTGAGGTGTCCGTGCTGGCTGACTTTTACCCCTTCTGAGACTGACTTAAACGACAATGTTGTGAATCGGAGTCAGGGTTTAACGAGAAGGGTTAACGACTGTATCCAGGTCTCTCTAGGGATTTTGAAACCACGTAGTGTGCGTGGTGGCCAAGCAAAGGTGTTTTCGAAATCTTTACATCAGATCCTTACGATTTCACGAAGGAAAGGAAATAAGTAGAAGCTCTGTGAAGTTGTTTCTTCCAGGGCCGGAAGATCCGACAAGTAGTGTTGTATTGAATAACAGGAGGTGGGTTGAAATTGGAATGGGTACGCAGGAGGAGTCGCTGGCCACTCAAATGGAGTGCATGGCTGTCGCGAGCGGGGAAGACACGTCGGGGGTTGAATGGGCGAAATACTCAAAGAGGGTTCTCATCAAAAATATTGTAGGGCGCCCTGATGGCGGCCACGGATTGGTTGGACAGAGGGTGGTTGTGGGAGGATGGGTCAAGACTGGTAGAGAGCAGGGCAAAAACTTTGTATTTCTGGAGGTCAATGATGGCTCTTGCCCAACAAATCTTCAGGTATTGGTGGACTGTTCAGTTGCTTCTGACATTCATCTCACAGCAACAGGGACGTGCATTATGGTAGAAGGGGAGCTCAAGCAACCACCTGAAGGGACAAAGCAAAAGGTTGAGTTAAAGGTTGAGAAGATTCTGGAAGTGGGGGCTGTTGAGCCTAAATATCCAATTGCAAAAGCAAAATTGTCTATGGAATATTTGAGGGGCTTTATGCACCTTCGACCTAGAACAAACACGATTTCTGCAGTTGCTCGAATTCGTAACGCCCTTGCATATGCGACACATACATTTTTTCAGAAACATGGGTTTAACTATATCCATACACCTATAATTACAACAAGTGATTGCGAGGGTGCTGGGGAGATGTTTCAAGTTACAACACTATTTAGTGAGGCAGATAGGTTAGAGCGTGAATTGAAGGAAAACCCCCCACCTTCTGAAGCTGATTTAGAAGCTACTAAGTTCCTTGTTAAAGAGAAAGGTGACAGGGTGTCAGATCTGAAGGCCAACCAAGCTGATAAATCAGAAATTGTTGCAGCAGTATCTGAGCTGCGAAAGTCTAAAGATCAGCTCTTAAAAATGGAAGAAAGGTCTAAATTGAAACCTGGCATTCCACAAAAAGATGGGAAGATTGATTTTTCCCAGGACTTCTTTACCCGCCAAGCATTCTTGACTGTCTCTGGTCAGCTCCAGGTTGAGACCTATGCATGTGCACTTAGTAGTGTATACACATTTGGTCCAACTTTCCGTGCTGAAAATTCTCATACATCGAGGCATCTTGCGGAGTTTTGGATGGTTGAGCCTGAAATTGCCTTTGCAGATTTACAGGATGACATGAATTGTGCAGAAGACTATGTGAAGTTCTTGTGTCAATGGTTGCTTGATAACTGCCTTGATGATATGGAATTCATGGCAAAGATGTTTGATAAGACTGCTATAGATCGACTTCGTTCTGTGGCGAATACCTCATTTGCACGTATTACGTACACAGAAGCAATTCAACTTCTAGAGAAGGTTACAGATAAGAAATTTGACAATGAGGTGGAGTGGGGCATTGATTTAGCATCGGAGCATGAGAGATATTTAACAGAGGAGATATTTAAAAAGCCAGTAATTGTGTACAACTATCCAAAAAACATCAAGGCATTTTACATGCGGGTCAATGATGATGGAAAGACTGTTGCTGCCATGGATGTACTTGTGCCTAAGGTTGGGGAATTGATTGGTGGGAGTCAAAGAGAGGAGCGATATGAAGTCATTGTAAATAGGATACAAGAGATGGGCTTGCCAAGAGAGCCTTATGATTGGTACTTGGATCTGCGTCGATATGGAACTGTAAAGCATGCTGGATTTGGCCTAGGGTTTGAACGTATGGTACTTTTTGCGACTGGTCTGGAAAATATAAGAGATGCCATCCCCTTCCCTAGATATCCAGGGAGAGCTGATCTGTGAACGTTACAAGTTCAATTGCATTTTTGTTTCAACTTACATAAGATTGACTGACCAAAGATAATTCTAAGGTTGAATAGGAAAAGCTATATTTATAAACTTGAAACTGCCAGTGAGCTAAGCAGTATCAGATTTGGGTTTATTCCATATTGTGATAGGGTAAATCTTATATATTTGTAATTCTAAATGTGTCATTCTTTAACATATTATTTAATTGTTTTTCTTATATGGTTGCAAGTAGACTGATGCTCTCTAGAGGAATTTCACGGAAAATTCTACTGCTTAGGGGAATTAGTAAATACTGTTCTGGATTCATTATTCAGTACAATAACTACTTGATTGTATGAGACGACCTTGACTCTTAAGTTGCTTCAGTGGAGCTTACCTGCAACGTGTTTGGTGTCTTTAATCAACTGTTCTAGTTGAATATGCTCATTCAGTATAGCATTATATTCATTCGCTTATGAAGCCTAAAACTAAATCTATGAACGTTCTTCTTTTT

Ace file of the UniGene sp_v3.0_unigene2006

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp\|Q9SW96.1\|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb\|AAD4	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Aspartyl-tRNA synthetase, putative	-	-	2.487e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Asparagine--tRNA ligase.	EC:6.1.1.22	-	2.415e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		2.415e-28	%

Source	Gene names
Sma3	31.t00024; At1g68420; At1g70980; At3g07420; At4g17300; At5g56680; B1039D07.28; B1045D11.6; CHLREDRAFT_117306; EMB2755; F15H11.17; F21O3.13; GSVIVT00004435001; GSVIVT00005547001; GSVIVT00008056001; GSVIVT00013655001; GSVIVT00014134001; GSVIVT00016614001; G

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	aspartate-tRNA ligase activity	GO:0004815	Molecular Function	-
Sma3	asparagine-tRNA ligase activity	GO:0004816	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	asparaginyl-tRNA aminoacylation	GO:0006421	Biological Process	-
Sma3	aspartyl-tRNA aminoacylation	GO:0006422	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	WHEP-TRS	IPR000738	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	IPR002312	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Asparaginyl-tRNA synthetase, class IIb	IPR004522	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56680.1	SYNC1, EMB2755, SYNC1 ARATH Class II aminoacyl-tRNA and biotin synthetases superfamily protein chr5:22936645-22938841 FORWARD LENGTH=572	69%
RefSeq	Arabidopsis thaliana	NP_200479.1	asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002330501.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX07

Fln msg:

Fln protein: MGTQEESLATQMECMAVASGEDTSGVEWAKYSKRVLIKNIVGRPDGGHGLVGQRVVVGGWVKTGREQGKNFVFLEVNDGSCPTNLQVLVDCSVASDIHLTATGTCIMVEGELKQPPEGTKQKVELKVEKILEVGAVEPKYPIAKAKLSMEYLRGFMHLRPRTNTISAVARIRNALAYATHTFFQKHGFNYIHTPIITTSDCEGAGEMFQVTTLFSEADRLERELKENPPPSEADLEATKFLVKEKGDRVSDLKANQADKSEIVAAVSELRKSKDQLLKMEERSKLKPGIPQKDGKIDFSQDFFTRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLQDDMNCAEDYVKFLCQWLLDNCLDDMEFMAKMFDKTAIDRLRSVANTSFARITYTEAIQLLEKVTDKKFDNEVEWGIDLASEHERYLTEEIFKKPVIVYNYPKNIKAFYMRVNDDGKTVAAMDVLVPKVGELIGGSQREERYEVIVNRIQEMGLPREPYDWYLDLRRYGTVKHAGFGLGFERMVLFATGLENIRDAIPFPRYPGRADL*

Protein Length: 570

Fln nts: ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCTTCAACATTTAGTATAAGATGCTAAAAAATGTGAGGTGTCCGTGCTGGCTGACTTTTACCCCTTCTGAGACTGACTTAAACGACAATGTTGTGAATCGGAGTCAGGGTTTAACGAGAAGGGTTAACGACTGTATCCAGGTCTCTCTAGGGATTTTGAAACCACGTAGTGTGCGTGGTGGCCAAGCAAAGGTGTTTTCGAAATCTTTACATCAGATCCTTACGATTTCACGAAGGAAAGGAAATAAGTAGAAGCTCTGTGAAGTTGTTTCTTCCAGGGCCGGAAGATCCGACAAGTAGTGTTGTATTGAATAACAGGAGGTGGGTTGAAATTGGA_-_ATGGGTACGCAGGAGGAGTCGCTGGCCACTCAAATGGAGTGCATGGCTGTCGCGAGCGGGGAAGACACGTCGGGGGTTGAATGGGCGAAATACTCAAAGAGGGTTCTCATCAAAAATATTGTAGGGCGCCCTGATGGCGGCCACGGATTGGTTGGACAGAGGGTGGTTGTGGGAGGATGGGTCAAGACTGGTAGAGAGCAGGGCAAAAACTTTGTATTTCTGGAGGTCAATGATGGCTCTTGCCCAACAAATCTTCAGGTATTGGTGGACTGTTCAGTTGCTTCTGACATTCATCTCACAGCAACAGGGACGTGCATTATGGTAGAAGGGGAGCTCAAGCAACCACCTGAAGGGACAAAGCAAAAGGTTGAGTTAAAGGTTGAGAAGATTCTGGAAGTGGGGGCTGTTGAGCCTAAATATCCAATTGCAAAAGCAAAATTGTCTATGGAATATTTGAGGGGCTTTATGCACCTTCGACCTAGAACAAACACGATTTCTGCAGTTGCTCGAATTCGTAACGCCCTTGCATATGCGACACATACATTTTTTCAGAAACATGGGTTTAACTATATCCATACACCTATAATTACAACAAGTGATTGCGAGGGTGCTGGGGAGATGTTTCAAGTTACAACACTATTTAGTGAGGCAGATAGGTTAGAGCGTGAATTGAAGGAAAACCCCCCACCTTCTGAAGCTGATTTAGAAGCTACTAAGTTCCTTGTTAAAGAGAAAGGTGACAGGGTGTCAGATCTGAAGGCCAACCAAGCTGATAAATCAGAAATTGTTGCAGCAGTATCTGAGCTGCGAAAGTCTAAAGATCAGCTCTTAAAAATGGAAGAAAGGTCTAAATTGAAACCTGGCATTCCACAAAAAGATGGGAAGATTGATTTTTCCCAGGACTTCTTTACCCGCCAAGCATTCTTGACTGTCTCTGGTCAGCTCCAGGTTGAGACCTATGCATGTGCACTTAGTAGTGTATACACATTTGGTCCAACTTTCCGTGCTGAAAATTCTCATACATCGAGGCATCTTGCGGAGTTTTGGATGGTTGAGCCTGAAATTGCCTTTGCAGATTTACAGGATGACATGAATTGTGCAGAAGACTATGTGAAGTTCTTGTGTCAATGGTTGCTTGATAACTGCCTTGATGATATGGAATTCATGGCAAAGATGTTTGATAAGACTGCTATAGATCGACTTCGTTCTGTGGCGAATACCTCATTTGCACGTATTACGTACACAGAAGCAATTCAACTTCTAGAGAAGGTTACAGATAAGAAATTTGACAATGAGGTGGAGTGGGGCATTGATTTAGCATCGGAGCATGAGAGATATTTAACAGAGGAGATATTTAAAAAGCCAGTAATTGTGTACAACTATCCAAAAAACATCAAGGCATTTTACATGCGGGTCAATGATGATGGAAAGACTGTTGCTGCCATGGATGTACTTGTGCCTAAGGTTGGGGAATTGATTGGTGGGAGTCAAAGAGAGGAGCGATATGAAGTCATTGTAAATAGGATACAAGAGATGGGCTTGCCAAGAGAGCCTTATGATTGGTACTTGGATCTGCGTCGATATGGAACTGTAAAGCATGCTGGATTTGGCCTAGGGTTTGAACGTATGGTACTTTTTGCGACTGGTCTGGAAAATATAAGAGATGCCATCCCCTTCCCTAGATATCCAGGGAGAGCTGATCTGTGA___ACGTTACAAGTTCAATTGCATTTTTGTTTCAACTTACATAAGATTGACTGACCAAAGATAATTCTAAGGTTGAATAGGAAAAGCTATATTTATAAACTTGAAACTGCCAGTGAGCTAAGCAGTATCAGATTTGGGTTTATTCCATATTGTGATAGGGTAAATCTTATATATTTGTAATTCTAAATGTGTCATTCTTTAACATATTATTTAATTGTTTTTCTTATATGGTTGCAAGTAGACTGATGCTCTCTAGAGGAATTTCACGGAAAATTCTACTGCTTAGGGGAATTAGTAAATACTGTTCTGGATTCATTATTCAGTACAATAACTACTTGATTGTATGAGACGACCTTGACTCTTAAGTTGCTTCAGTGGAGCTTACCTGCAACGTGTTTGGTGTCTTTAATCAACTGTTCTAGTTGAATATGCTCATTCAGTATAGCATTATATTCATTCGCTTATGAAGCCTAAAACTAAATCTATGAACGTTCTTCTTTTT

Fln Alignment:

Contig2006___GKIDFSQDFFTRQAFLTVSGQLQVETYACA-LSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLQDD-MNCAEDYVKFLCQWLLDNCLDDMEFMAKMFDKTAIDRLRSVANTSFARITYTEAIQLLEKVTDKKFDNEVEWGIDLASEHERYLTEEIFKKP----VIVYNYPKNIKAFY-MRVNDDGKTVAAMDVLVPKVGELIGGSQREERYEVIVNRIQEMGLPREPYDWYLDLRRYGTVKHAGFGLGFERMVLFATGLENIRDAIPFPRYPGR
A9NX07______________GSSVFKLDYKGQPACLAQSPQLHKQMAICADFGRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYFEVLDILDKLFITIFDGLNEHCKKELHAINQQYPFEPLKYLRKTL-----RLTFQEGVQML-----KEAGIEVDPLGDFNTETERKLGGLVREKYDTDFYILHRYPLAVRPFYTMPCIDDPLYSNSFDVFI-RGEEIISGAQRVHEPEFLTKRAKELGIDVNTISTYIDSFRWGAVPHGGLGVGLERVVMLFCALNNIRKTSLFPRDPQR

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
356		40	60		1.0
363	20		60		0.99255
539		58	41		1.0
747		57		42	1.0
1060		75		25	0.996473
1061	75			25	0.996473
1148		20		80	0.995493
1150	80			20	0.995493
1151	80			20	0.995493
1184	75		25		0.996473
1355	87		12		0.992554
1817		25		75	1.0
2029	90		10		0.90298
2242	17			82	1.0
2331		18	81		1.0
2343		16		83	0.999991
2400	37		62		1.0
2460	10		90		0.999898
2484	11		88		0.923564
2492	20			80	0.995493
2550	33			66	0.997452
2551	33		66		0.997452
2554	33		66		0.997452
2555	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain